Estimation of the POD Function and the LOD of a Binary Microbiological Measurement Method from an Interlaboratory Experiment
We deal with interlaboratory experiments (collaborative studies) in which participating laboratories, selected randomly from a population of laboratories, use samples from one and the same material or matrix. They perform binary microbiological measurements for which the measurement results are eith...
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creator | Jarvis, Basil Wilrich, Cordula Wilrich, Peter-Theodor |
description | We deal with interlaboratory experiments (collaborative studies) in which
participating laboratories, selected randomly from a population of laboratories, use samples from one and the same material or matrix. They perform binary microbiological measurements for which the measurement results are either "0" (target microorganisms not detected) or "1" (target microorganisms detected). The performance of such a measurement method is described by its probability of detection (POD) function, i.e., the POD as a function of the contamination of the sample (CFU per gram or CFU per milliliter), or by the level of detection (LOD
), i.e., the contamination level of the sample that is detected (measurement result "1") with a specified probability
.
We derive an approximate statistical analysis that is simple enough to be implemented in a spreadsheet application.
Under the assumption of a Poisson distribution of the number of CFU in the samples, we estimate the mean POD function of the laboratories and the SD of the laboratory effect based on a complementary log-log model, a special case of the Generalized Linear Model in the special situation in which the contamination level is known by means other than the POD. The estimates are obtained by maximization of the Laplace approximation of the likelihood function. By simulation, a bias correction factor for the estimate of the SD is obtained. With the estimated POD function, LODs can be estimated. The model can also be used to evaluate the relative LOD of an alternative method with repect to a reference method.
The EXCEL program PODLOD-interlab_ver1.xls for this method of statistical analysis can be downloaded from http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich.
A simple approximate statistical method for the estimation of the POD and LOD is derived. The method also allows the estimation of the RLOD of an alternative method with respect to reference method. The method is implemented in an EXCEL program that can be downloaded from http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich. |
doi_str_mv | 10.5740/jaoacint.18-0412 |
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participating laboratories, selected randomly from a population of laboratories, use samples from one and the same material or matrix. They perform binary microbiological measurements for which the measurement results are either "0" (target microorganisms not detected) or "1" (target microorganisms detected). The performance of such a measurement method is described by its probability of detection (POD) function, i.e., the POD as a function of the contamination of the sample (CFU per gram or CFU per milliliter), or by the level of detection (LOD
), i.e., the contamination level of the sample that is detected (measurement result "1") with a specified probability
.
We derive an approximate statistical analysis that is simple enough to be implemented in a spreadsheet application.
Under the assumption of a Poisson distribution of the number of CFU in the samples, we estimate the mean POD function of the laboratories and the SD of the laboratory effect based on a complementary log-log model, a special case of the Generalized Linear Model in the special situation in which the contamination level is known by means other than the POD. The estimates are obtained by maximization of the Laplace approximation of the likelihood function. By simulation, a bias correction factor for the estimate of the SD is obtained. With the estimated POD function, LODs can be estimated. The model can also be used to evaluate the relative LOD of an alternative method with repect to a reference method.
The EXCEL program PODLOD-interlab_ver1.xls for this method of statistical analysis can be downloaded from <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich">http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich</ext-link>.
A simple approximate statistical method for the estimation of the POD and LOD is derived. The method also allows the estimation of the RLOD of an alternative method with respect to reference method. The method is implemented in an EXCEL program that can be downloaded from <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="url" xlink:href="http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich">http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich</ext-link>.</description><identifier>ISSN: 1060-3271</identifier><identifier>EISSN: 1944-7922</identifier><identifier>DOI: 10.5740/jaoacint.18-0412</identifier><identifier>PMID: 31113528</identifier><language>eng</language><publisher>England: AOAC International</publisher><subject>Likelihood Functions ; Limit of Detection ; Microbiological Techniques - statistics & numerical data ; Microbiology ; Microorganisms ; Poisson Distribution ; Spreadsheet software</subject><ispartof>Journal of AOAC International, 2019-09, Vol.102 (5), p.1617-1623</ispartof><rights>COPYRIGHT 2019 AOAC International</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2952-1a2da02094ef02d39576acaa8a476dee33c18f812a8620dfd6892bf8f9d34ece3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31113528$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jarvis, Basil</creatorcontrib><creatorcontrib>Wilrich, Cordula</creatorcontrib><creatorcontrib>Wilrich, Peter-Theodor</creatorcontrib><title>Estimation of the POD Function and the LOD of a Binary Microbiological Measurement Method from an Interlaboratory Experiment</title><title>Journal of AOAC International</title><addtitle>J AOAC Int</addtitle><description>We deal with interlaboratory experiments (collaborative studies) in which
participating laboratories, selected randomly from a population of laboratories, use samples from one and the same material or matrix. They perform binary microbiological measurements for which the measurement results are either "0" (target microorganisms not detected) or "1" (target microorganisms detected). The performance of such a measurement method is described by its probability of detection (POD) function, i.e., the POD as a function of the contamination of the sample (CFU per gram or CFU per milliliter), or by the level of detection (LOD
), i.e., the contamination level of the sample that is detected (measurement result "1") with a specified probability
.
We derive an approximate statistical analysis that is simple enough to be implemented in a spreadsheet application.
Under the assumption of a Poisson distribution of the number of CFU in the samples, we estimate the mean POD function of the laboratories and the SD of the laboratory effect based on a complementary log-log model, a special case of the Generalized Linear Model in the special situation in which the contamination level is known by means other than the POD. The estimates are obtained by maximization of the Laplace approximation of the likelihood function. By simulation, a bias correction factor for the estimate of the SD is obtained. With the estimated POD function, LODs can be estimated. The model can also be used to evaluate the relative LOD of an alternative method with repect to a reference method.
The EXCEL program PODLOD-interlab_ver1.xls for this method of statistical analysis can be downloaded from <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich">http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich</ext-link>.
A simple approximate statistical method for the estimation of the POD and LOD is derived. The method also allows the estimation of the RLOD of an alternative method with respect to reference method. The method is implemented in an EXCEL program that can be downloaded from <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="url" xlink:href="http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich">http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich</ext-link>.</description><subject>Likelihood Functions</subject><subject>Limit of Detection</subject><subject>Microbiological Techniques - statistics & numerical data</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Poisson Distribution</subject><subject>Spreadsheet software</subject><issn>1060-3271</issn><issn>1944-7922</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kc1v3CAQxVHVqPm891T52Iu3fNnGxzTdNJE2Sg7tGc3CkBDZsAUstVL_-LLZpCdGb94PmHmEfGR01Q2SfnmGCMaHsmKqpZLxd-SEjVK2w8j5-1rTnraCD-yYnOb8TKulp_wDORaMMdFxdUL-rnPxMxQfQxNdU56webj_1lwvwbxoEOyLuKli7UPz1QdIf5o7b1Lc-jjFR29gau4Q8pJwxlBqXZ6ibVyKc-Wb21AwTbCNCUqs6Pr3DpPfO8_JkYMp48XreUZ-Xq9_XN20m_vvt1eXm9bwseMtA26BcjpKdJRbMXZDDwZAgRx6iyiEYcopxkH1nFpnezXyrVNutEKiQXFGPh_u3aX4a8Fc9OyzwWmCgHHJmnPBqZKik9W6OlgfYULtg4sl1bcMWJy9iQGdr_plT5ng3SCGCtADUPeRc0Knd3W4uiLNqN6HpN9C0kzpfUgV-fT6nWU7o_0PvKUi_gHEgo_4</recordid><startdate>20190901</startdate><enddate>20190901</enddate><creator>Jarvis, Basil</creator><creator>Wilrich, Cordula</creator><creator>Wilrich, Peter-Theodor</creator><general>AOAC International</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20190901</creationdate><title>Estimation of the POD Function and the LOD of a Binary Microbiological Measurement Method from an Interlaboratory Experiment</title><author>Jarvis, Basil ; Wilrich, Cordula ; Wilrich, Peter-Theodor</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2952-1a2da02094ef02d39576acaa8a476dee33c18f812a8620dfd6892bf8f9d34ece3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Likelihood Functions</topic><topic>Limit of Detection</topic><topic>Microbiological Techniques - statistics & numerical data</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Poisson Distribution</topic><topic>Spreadsheet software</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jarvis, Basil</creatorcontrib><creatorcontrib>Wilrich, Cordula</creatorcontrib><creatorcontrib>Wilrich, Peter-Theodor</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of AOAC International</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jarvis, Basil</au><au>Wilrich, Cordula</au><au>Wilrich, Peter-Theodor</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Estimation of the POD Function and the LOD of a Binary Microbiological Measurement Method from an Interlaboratory Experiment</atitle><jtitle>Journal of AOAC International</jtitle><addtitle>J AOAC Int</addtitle><date>2019-09-01</date><risdate>2019</risdate><volume>102</volume><issue>5</issue><spage>1617</spage><epage>1623</epage><pages>1617-1623</pages><issn>1060-3271</issn><eissn>1944-7922</eissn><abstract>We deal with interlaboratory experiments (collaborative studies) in which
participating laboratories, selected randomly from a population of laboratories, use samples from one and the same material or matrix. They perform binary microbiological measurements for which the measurement results are either "0" (target microorganisms not detected) or "1" (target microorganisms detected). The performance of such a measurement method is described by its probability of detection (POD) function, i.e., the POD as a function of the contamination of the sample (CFU per gram or CFU per milliliter), or by the level of detection (LOD
), i.e., the contamination level of the sample that is detected (measurement result "1") with a specified probability
.
We derive an approximate statistical analysis that is simple enough to be implemented in a spreadsheet application.
Under the assumption of a Poisson distribution of the number of CFU in the samples, we estimate the mean POD function of the laboratories and the SD of the laboratory effect based on a complementary log-log model, a special case of the Generalized Linear Model in the special situation in which the contamination level is known by means other than the POD. The estimates are obtained by maximization of the Laplace approximation of the likelihood function. By simulation, a bias correction factor for the estimate of the SD is obtained. With the estimated POD function, LODs can be estimated. The model can also be used to evaluate the relative LOD of an alternative method with repect to a reference method.
The EXCEL program PODLOD-interlab_ver1.xls for this method of statistical analysis can be downloaded from <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich">http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich</ext-link>.
A simple approximate statistical method for the estimation of the POD and LOD is derived. The method also allows the estimation of the RLOD of an alternative method with respect to reference method. The method is implemented in an EXCEL program that can be downloaded from <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="url" xlink:href="http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich">http://www.wiwiss.fu-berlin.de/fachbereich/vwl/iso/ehemalige/wilrich</ext-link>.</abstract><cop>England</cop><pub>AOAC International</pub><pmid>31113528</pmid><doi>10.5740/jaoacint.18-0412</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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source | Oxford University Press Journals All Titles (1996-Current); MEDLINE |
subjects | Likelihood Functions Limit of Detection Microbiological Techniques - statistics & numerical data Microbiology Microorganisms Poisson Distribution Spreadsheet software |
title | Estimation of the POD Function and the LOD of a Binary Microbiological Measurement Method from an Interlaboratory Experiment |
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