Development and validation of a gene expression test to identify hard‐to‐heal chronic venous leg ulcers

Background Chronic venous leg ulcers pose a significant burden to healthcare systems, and predicting wound healing is challenging. The aim of this study was to develop a genetic test to evaluate the propensity of a chronic ulcer to heal. Methods Sequential refinement and testing of a gene expression...

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Veröffentlicht in:British journal of surgery 2019-07, Vol.106 (8), p.1035-1042
Hauptverfasser: Bosanquet, D. C., Sanders, A. J., Ruge, F., Lane, J., Morris, C. A., Jiang, W. G., Harding, K. G.
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container_end_page 1042
container_issue 8
container_start_page 1035
container_title British journal of surgery
container_volume 106
creator Bosanquet, D. C.
Sanders, A. J.
Ruge, F.
Lane, J.
Morris, C. A.
Jiang, W. G.
Harding, K. G.
description Background Chronic venous leg ulcers pose a significant burden to healthcare systems, and predicting wound healing is challenging. The aim of this study was to develop a genetic test to evaluate the propensity of a chronic ulcer to heal. Methods Sequential refinement and testing of a gene expression signature was conducted using three distinct cohorts of human wound tissue. The expression of candidate genes was screened using a cohort of acute and chronic wound tissue and normal skin with quantitative transcript analysis. Genes showing significant expression differences were combined and examined, using receiver operating characteristic (ROC) curve analysis, in a controlled prospective study of patients with venous leg ulcers. A refined gene signature was evaluated using a prospective, blinded study of consecutive patients with venous ulcers. Results The initial gene signature, comprising 25 genes, could identify the outcome (healing versus non‐healing) of chronic venous leg ulcers (area under the curve (AUC) 0·84, 95 per cent c.i. 0·73 to 0·94). Subsequent refinement resulted in a final 14‐gene signature (WD14), which performed equally well (AUC 0·88, 0·80 to 0·97). When examined in a prospective blinded study, the WD14 signature could also identify wounds likely to demonstrate signs of healing (AUC 0·73, 0·62 to 0·84). Conclusion A gene signature can identify people with chronic venous leg ulcers that are unlikely to heal. Genetic interrogation of wound‐edge biopsies of chronic venous leg ulcers can be used to provide prognostic information on wound healing. Sequential refinement and validation, using three distinct patient cohorts, resulted in a 14‐gene signature that was able to predict healing propensity for chronic venous leg ulcers. Identifies poor healers
doi_str_mv 10.1002/bjs.11161
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C. ; Sanders, A. J. ; Ruge, F. ; Lane, J. ; Morris, C. A. ; Jiang, W. G. ; Harding, K. G.</creator><creatorcontrib>Bosanquet, D. C. ; Sanders, A. J. ; Ruge, F. ; Lane, J. ; Morris, C. A. ; Jiang, W. G. ; Harding, K. G.</creatorcontrib><description>Background Chronic venous leg ulcers pose a significant burden to healthcare systems, and predicting wound healing is challenging. The aim of this study was to develop a genetic test to evaluate the propensity of a chronic ulcer to heal. Methods Sequential refinement and testing of a gene expression signature was conducted using three distinct cohorts of human wound tissue. The expression of candidate genes was screened using a cohort of acute and chronic wound tissue and normal skin with quantitative transcript analysis. Genes showing significant expression differences were combined and examined, using receiver operating characteristic (ROC) curve analysis, in a controlled prospective study of patients with venous leg ulcers. A refined gene signature was evaluated using a prospective, blinded study of consecutive patients with venous ulcers. Results The initial gene signature, comprising 25 genes, could identify the outcome (healing versus non‐healing) of chronic venous leg ulcers (area under the curve (AUC) 0·84, 95 per cent c.i. 0·73 to 0·94). Subsequent refinement resulted in a final 14‐gene signature (WD14), which performed equally well (AUC 0·88, 0·80 to 0·97). When examined in a prospective blinded study, the WD14 signature could also identify wounds likely to demonstrate signs of healing (AUC 0·73, 0·62 to 0·84). Conclusion A gene signature can identify people with chronic venous leg ulcers that are unlikely to heal. Genetic interrogation of wound‐edge biopsies of chronic venous leg ulcers can be used to provide prognostic information on wound healing. Sequential refinement and validation, using three distinct patient cohorts, resulted in a 14‐gene signature that was able to predict healing propensity for chronic venous leg ulcers. 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Genes showing significant expression differences were combined and examined, using receiver operating characteristic (ROC) curve analysis, in a controlled prospective study of patients with venous leg ulcers. A refined gene signature was evaluated using a prospective, blinded study of consecutive patients with venous ulcers. Results The initial gene signature, comprising 25 genes, could identify the outcome (healing versus non‐healing) of chronic venous leg ulcers (area under the curve (AUC) 0·84, 95 per cent c.i. 0·73 to 0·94). Subsequent refinement resulted in a final 14‐gene signature (WD14), which performed equally well (AUC 0·88, 0·80 to 0·97). When examined in a prospective blinded study, the WD14 signature could also identify wounds likely to demonstrate signs of healing (AUC 0·73, 0·62 to 0·84). Conclusion A gene signature can identify people with chronic venous leg ulcers that are unlikely to heal. Genetic interrogation of wound‐edge biopsies of chronic venous leg ulcers can be used to provide prognostic information on wound healing. Sequential refinement and validation, using three distinct patient cohorts, resulted in a 14‐gene signature that was able to predict healing propensity for chronic venous leg ulcers. 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J.</creatorcontrib><creatorcontrib>Ruge, F.</creatorcontrib><creatorcontrib>Lane, J.</creatorcontrib><creatorcontrib>Morris, C. A.</creatorcontrib><creatorcontrib>Jiang, W. G.</creatorcontrib><creatorcontrib>Harding, K. G.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><jtitle>British journal of surgery</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bosanquet, D. C.</au><au>Sanders, A. J.</au><au>Ruge, F.</au><au>Lane, J.</au><au>Morris, C. A.</au><au>Jiang, W. G.</au><au>Harding, K. G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Development and validation of a gene expression test to identify hard‐to‐heal chronic venous leg ulcers</atitle><jtitle>British journal of surgery</jtitle><addtitle>Br J Surg</addtitle><date>2019-07</date><risdate>2019</risdate><volume>106</volume><issue>8</issue><spage>1035</spage><epage>1042</epage><pages>1035-1042</pages><issn>0007-1323</issn><eissn>1365-2168</eissn><abstract>Background Chronic venous leg ulcers pose a significant burden to healthcare systems, and predicting wound healing is challenging. The aim of this study was to develop a genetic test to evaluate the propensity of a chronic ulcer to heal. Methods Sequential refinement and testing of a gene expression signature was conducted using three distinct cohorts of human wound tissue. The expression of candidate genes was screened using a cohort of acute and chronic wound tissue and normal skin with quantitative transcript analysis. Genes showing significant expression differences were combined and examined, using receiver operating characteristic (ROC) curve analysis, in a controlled prospective study of patients with venous leg ulcers. A refined gene signature was evaluated using a prospective, blinded study of consecutive patients with venous ulcers. Results The initial gene signature, comprising 25 genes, could identify the outcome (healing versus non‐healing) of chronic venous leg ulcers (area under the curve (AUC) 0·84, 95 per cent c.i. 0·73 to 0·94). Subsequent refinement resulted in a final 14‐gene signature (WD14), which performed equally well (AUC 0·88, 0·80 to 0·97). When examined in a prospective blinded study, the WD14 signature could also identify wounds likely to demonstrate signs of healing (AUC 0·73, 0·62 to 0·84). Conclusion A gene signature can identify people with chronic venous leg ulcers that are unlikely to heal. 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source MEDLINE; Wiley Online Library Journals Frontfile Complete; Oxford University Press Journals All Titles (1996-Current)
subjects Adult
Biopsy
Gene expression
Genetic testing
Genetic Testing - methods
Humans
Leg Ulcer - genetics
Leg Ulcer - pathology
Leg Ulcer - physiopathology
Leg ulcers
Reproducibility of Results
ROC Curve
Sensitivity and Specificity
Transcriptome
Wound healing
Wound Healing - genetics
title Development and validation of a gene expression test to identify hard‐to‐heal chronic venous leg ulcers
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