Two-photon Bessel beam tomography for fast volume imaging

Light microscopy on dynamic samples, for example neural activity in the brain, often requires imaging volumes that extend over several 100 µm in axial direction at a rate of at least several tens of Hertz. Here, we develop a tomography approach for scanning fluorescence microscopy which allows recor...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Optics express 2019-04, Vol.27 (9), p.12147-12162
Hauptverfasser: Valle, Andres Flores, Seelig, Johannes D
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 12162
container_issue 9
container_start_page 12147
container_title Optics express
container_volume 27
creator Valle, Andres Flores
Seelig, Johannes D
description Light microscopy on dynamic samples, for example neural activity in the brain, often requires imaging volumes that extend over several 100 µm in axial direction at a rate of at least several tens of Hertz. Here, we develop a tomography approach for scanning fluorescence microscopy which allows recording a volume image in a single frame scan. Volumes are imaged by simultaneously recording four independent projections at different angles using temporally multiplexed, tilted Bessel beams. From the resulting projections, three-dimensional images are reconstructed using inverse Radon transforms combined with convolutional neural networks (U-net).
doi_str_mv 10.1364/OE.27.012147
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2229228845</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2229228845</sourcerecordid><originalsourceid>FETCH-LOGICAL-c329t-9b35dfc818b882dcebae23a33d4cd204e9303a515735047ff5ecd7260ecc08403</originalsourceid><addsrcrecordid>eNpNkDtPwzAYRS0EoqWwMaOMDCT4WdsjVOUhVepSZstxPrdFSR3sBNR_T1ALYrp3OLq6OghdE1wQNuX3y3lBZYEJJVyeoDHBmuccK3n6r4_QRUrvGA-IludoxAgWVAo9Rnr1FfJ2E7qwyx4hJaizEmyTdaEJ62jbzT7zIWbepi77DHXfQLZt7Hq7W1-iM2_rBFfHnKC3p_lq9pIvls-vs4dF7hjVXa5LJirvFFGlUrRyUFqgzDJWcVdRzEEzzKwgQjKBufRegKsknWJwDiuO2QTdHnbbGD56SJ1ptslBXdsdhD4ZSqmmVCkuBvTugLoYUorgTRuHt3FvCDY_ssxybqg0B1kDfnNc7ssGqj_41w77BqaaY4Y</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2229228845</pqid></control><display><type>article</type><title>Two-photon Bessel beam tomography for fast volume imaging</title><source>DOAJ Directory of Open Access Journals</source><source>EZB-FREE-00999 freely available EZB journals</source><source>Alma/SFX Local Collection</source><creator>Valle, Andres Flores ; Seelig, Johannes D</creator><creatorcontrib>Valle, Andres Flores ; Seelig, Johannes D</creatorcontrib><description>Light microscopy on dynamic samples, for example neural activity in the brain, often requires imaging volumes that extend over several 100 µm in axial direction at a rate of at least several tens of Hertz. Here, we develop a tomography approach for scanning fluorescence microscopy which allows recording a volume image in a single frame scan. Volumes are imaged by simultaneously recording four independent projections at different angles using temporally multiplexed, tilted Bessel beams. From the resulting projections, three-dimensional images are reconstructed using inverse Radon transforms combined with convolutional neural networks (U-net).</description><identifier>ISSN: 1094-4087</identifier><identifier>EISSN: 1094-4087</identifier><identifier>DOI: 10.1364/OE.27.012147</identifier><identifier>PMID: 31052759</identifier><language>eng</language><publisher>United States</publisher><ispartof>Optics express, 2019-04, Vol.27 (9), p.12147-12162</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c329t-9b35dfc818b882dcebae23a33d4cd204e9303a515735047ff5ecd7260ecc08403</citedby><cites>FETCH-LOGICAL-c329t-9b35dfc818b882dcebae23a33d4cd204e9303a515735047ff5ecd7260ecc08403</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,861,27905,27906</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31052759$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Valle, Andres Flores</creatorcontrib><creatorcontrib>Seelig, Johannes D</creatorcontrib><title>Two-photon Bessel beam tomography for fast volume imaging</title><title>Optics express</title><addtitle>Opt Express</addtitle><description>Light microscopy on dynamic samples, for example neural activity in the brain, often requires imaging volumes that extend over several 100 µm in axial direction at a rate of at least several tens of Hertz. Here, we develop a tomography approach for scanning fluorescence microscopy which allows recording a volume image in a single frame scan. Volumes are imaged by simultaneously recording four independent projections at different angles using temporally multiplexed, tilted Bessel beams. From the resulting projections, three-dimensional images are reconstructed using inverse Radon transforms combined with convolutional neural networks (U-net).</description><issn>1094-4087</issn><issn>1094-4087</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><recordid>eNpNkDtPwzAYRS0EoqWwMaOMDCT4WdsjVOUhVepSZstxPrdFSR3sBNR_T1ALYrp3OLq6OghdE1wQNuX3y3lBZYEJJVyeoDHBmuccK3n6r4_QRUrvGA-IludoxAgWVAo9Rnr1FfJ2E7qwyx4hJaizEmyTdaEJ62jbzT7zIWbepi77DHXfQLZt7Hq7W1-iM2_rBFfHnKC3p_lq9pIvls-vs4dF7hjVXa5LJirvFFGlUrRyUFqgzDJWcVdRzEEzzKwgQjKBufRegKsknWJwDiuO2QTdHnbbGD56SJ1ptslBXdsdhD4ZSqmmVCkuBvTugLoYUorgTRuHt3FvCDY_ssxybqg0B1kDfnNc7ssGqj_41w77BqaaY4Y</recordid><startdate>20190429</startdate><enddate>20190429</enddate><creator>Valle, Andres Flores</creator><creator>Seelig, Johannes D</creator><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20190429</creationdate><title>Two-photon Bessel beam tomography for fast volume imaging</title><author>Valle, Andres Flores ; Seelig, Johannes D</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c329t-9b35dfc818b882dcebae23a33d4cd204e9303a515735047ff5ecd7260ecc08403</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Valle, Andres Flores</creatorcontrib><creatorcontrib>Seelig, Johannes D</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Optics express</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Valle, Andres Flores</au><au>Seelig, Johannes D</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Two-photon Bessel beam tomography for fast volume imaging</atitle><jtitle>Optics express</jtitle><addtitle>Opt Express</addtitle><date>2019-04-29</date><risdate>2019</risdate><volume>27</volume><issue>9</issue><spage>12147</spage><epage>12162</epage><pages>12147-12162</pages><issn>1094-4087</issn><eissn>1094-4087</eissn><abstract>Light microscopy on dynamic samples, for example neural activity in the brain, often requires imaging volumes that extend over several 100 µm in axial direction at a rate of at least several tens of Hertz. Here, we develop a tomography approach for scanning fluorescence microscopy which allows recording a volume image in a single frame scan. Volumes are imaged by simultaneously recording four independent projections at different angles using temporally multiplexed, tilted Bessel beams. From the resulting projections, three-dimensional images are reconstructed using inverse Radon transforms combined with convolutional neural networks (U-net).</abstract><cop>United States</cop><pmid>31052759</pmid><doi>10.1364/OE.27.012147</doi><tpages>16</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1094-4087
ispartof Optics express, 2019-04, Vol.27 (9), p.12147-12162
issn 1094-4087
1094-4087
language eng
recordid cdi_proquest_miscellaneous_2229228845
source DOAJ Directory of Open Access Journals; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection
title Two-photon Bessel beam tomography for fast volume imaging
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-19T16%3A15%3A08IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Two-photon%20Bessel%20beam%20tomography%20for%20fast%20volume%20imaging&rft.jtitle=Optics%20express&rft.au=Valle,%20Andres%20Flores&rft.date=2019-04-29&rft.volume=27&rft.issue=9&rft.spage=12147&rft.epage=12162&rft.pages=12147-12162&rft.issn=1094-4087&rft.eissn=1094-4087&rft_id=info:doi/10.1364/OE.27.012147&rft_dat=%3Cproquest_cross%3E2229228845%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2229228845&rft_id=info:pmid/31052759&rfr_iscdi=true