Three Hfq‐dependent small RNAs regulate flagellar motility in the fire blight pathogen Erwinia amylovora

Summary Erwinia amylovora, the causative agent of fire blight disease of apple and pear trees, causes disease on flowers by invading natural openings at the base of the floral cup. To reach these openings, the bacteria use flagellar motility to swim from stigma tips to the hypanthium and through nectar. We have previously shown that the Hfq‐dependent sRNAs ArcZ, OmrAB and RmaA regulate swimming motility in E. amylovora. Here, we tested these three sRNAs to determine at what regulatory level they exert their effects and to what extent they can complement each other. We found that ArcZ and OmrAB repress the flagellar master regulator flhD post‐transcriptionally. We also found that ArcZ and RmaA positively regulate flhD at the transcriptional level. The role of ArcZ as an activator of flagellar motility appears to be unique to E. amylovora and may have recently evolved. Our results suggest that the Hfq‐dependent sRNAs ArcZ, OmrAB and RmaA play an integral role in regulation of flagellar motility by acting primarily on the master regulator, FlhD, but also through additional factors. Erwinia amylovora, relies on flagellar motility to swim through flower nectar to cause fire blight disease on apple and pear trees. Three Hfq‐dependent sRNAs known to regulate flagellar motility were studied to understand how this regulation occurs. We found that sRNA regulation of flagellar master regulator FlhD occurs at both the transcriptional and post‐transcriptional levels with complex relationships between sRNAs.