Phylogenomic analysis of the Brevibacillus brevis clade: a proposal for three new Brevibacillus species, Brevibacillus fortis sp. nov., Brevibacillus porteri sp. nov. and Brevibacillus schisleri sp. nov
During a screen for antifungal activity of Brevibacillus strains in the Northern Regional Research Laboratory collection we identified two strains with strong activity. Subsequent genomic sequencing and phylogenomic analysis revealed that these strains (NRRL NRS-1210 T and NRRL B-41110 T ) are likel...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2019-07, Vol.112 (7), p.991-999 |
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| description | During a screen for antifungal activity of
Brevibacillus
strains in the Northern Regional Research Laboratory collection we identified two strains with strong activity. Subsequent genomic sequencing and phylogenomic analysis revealed that these strains (NRRL NRS-1210
T
and NRRL B-41110
T
) are likely novel species. To confirm their taxonomic placement, we conducted a 16S rRNA phylogenetic analysis and subsequently sequenced the genomes of 10
Brevibacillus
type strains with a 16S homology > 97%. Phylogenomic analysis of these type strains and of representative
Brevibacillus
strains deposited in GenBank also identified several novel clades that should be recognised as novel species. For one of these novel clades, we were able to obtain a publicly available isolate (ATCC 35690
T
) that could serve as a type strain. The three new species were subjected to a polyphasic characterisation to confirm their taxonomic status. Cells of strains NRRL NRS-1210
T
, NRRL B-41110
T
and ATCC 35690
T
are Gram-staining positive, motile and form tan colonies. All three strains are obligate aerobic mesophiles with a broad pH range for growth. The two most prominent fatty acids of the three strains were identified as iso-C15:0 and anteiso-C15:0. The DNA G+C contents of strains NRRL NRS-1210
T
, NRRL B-41110
T
and ATCC 35690
T
are 47.2 mol%, 47.1 mol% and 47.3 mol%, respectively. Based on these characteristics, three novel species are proposed:
Brevibacillus fortis
sp. nov. (NRRL NRS-1210
T
= DSM 9886
T
= ATCC 51666
T
),
Brevibacillus porteri
sp. nov. (NRRL B-41110
T
= KACC 19693
T
) and
Brevibacillus schisleri
sp. nov. (ATCC 35690
T
= LMG 17055
T
). |
| doi_str_mv | 10.1007/s10482-019-01232-4 |
| format | Article |
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Brevibacillus
strains in the Northern Regional Research Laboratory collection we identified two strains with strong activity. Subsequent genomic sequencing and phylogenomic analysis revealed that these strains (NRRL NRS-1210
T
and NRRL B-41110
T
) are likely novel species. To confirm their taxonomic placement, we conducted a 16S rRNA phylogenetic analysis and subsequently sequenced the genomes of 10
Brevibacillus
type strains with a 16S homology > 97%. Phylogenomic analysis of these type strains and of representative
Brevibacillus
strains deposited in GenBank also identified several novel clades that should be recognised as novel species. For one of these novel clades, we were able to obtain a publicly available isolate (ATCC 35690
T
) that could serve as a type strain. The three new species were subjected to a polyphasic characterisation to confirm their taxonomic status. Cells of strains NRRL NRS-1210
T
, NRRL B-41110
T
and ATCC 35690
T
are Gram-staining positive, motile and form tan colonies. All three strains are obligate aerobic mesophiles with a broad pH range for growth. The two most prominent fatty acids of the three strains were identified as iso-C15:0 and anteiso-C15:0. The DNA G+C contents of strains NRRL NRS-1210
T
, NRRL B-41110
T
and ATCC 35690
T
are 47.2 mol%, 47.1 mol% and 47.3 mol%, respectively. Based on these characteristics, three novel species are proposed:
Brevibacillus fortis
sp. nov. (NRRL NRS-1210
T
= DSM 9886
T
= ATCC 51666
T
),
Brevibacillus porteri
sp. nov. (NRRL B-41110
T
= KACC 19693
T
) and
Brevibacillus schisleri
sp. nov. (ATCC 35690
T
= LMG 17055
T
).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-019-01232-4</identifier><identifier>PMID: 30693434</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Antifungal activity ; Base Composition ; Biomedical and Life Sciences ; Brevibacillus - classification ; Brevibacillus - genetics ; Brevibacillus - isolation & purification ; Brevibacillus - metabolism ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Fatty acids ; Fatty Acids - chemistry ; Fatty Acids - metabolism ; Fungicides ; Genome, Bacterial ; Genomes ; Homology ; Life Sciences ; Medical Microbiology ; Mesophiles ; Microbiology ; New species ; Original Paper ; Phylogeny ; Plant Sciences ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Soil Science & Conservation ; Taxonomy</subject><ispartof>Antonie van Leeuwenhoek, 2019-07, Vol.112 (7), p.991-999</ispartof><rights>Springer Nature Switzerland AG 2019</rights><rights>Antonie van Leeuwenhoek is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-72e8a85f0dccfc7284023c9007a9593f402addc4e5d43eac9d652ded0866bb153</citedby><cites>FETCH-LOGICAL-c375t-72e8a85f0dccfc7284023c9007a9593f402addc4e5d43eac9d652ded0866bb153</cites><orcidid>0000-0002-1100-0204</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-019-01232-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-019-01232-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30693434$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Johnson, Eric T.</creatorcontrib><creatorcontrib>Dunlap, Christopher A.</creatorcontrib><title>Phylogenomic analysis of the Brevibacillus brevis clade: a proposal for three new Brevibacillus species, Brevibacillus fortis sp. nov., Brevibacillus porteri sp. nov. and Brevibacillus schisleri sp. nov</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>During a screen for antifungal activity of
Brevibacillus
strains in the Northern Regional Research Laboratory collection we identified two strains with strong activity. Subsequent genomic sequencing and phylogenomic analysis revealed that these strains (NRRL NRS-1210
T
and NRRL B-41110
T
) are likely novel species. To confirm their taxonomic placement, we conducted a 16S rRNA phylogenetic analysis and subsequently sequenced the genomes of 10
Brevibacillus
type strains with a 16S homology > 97%. Phylogenomic analysis of these type strains and of representative
Brevibacillus
strains deposited in GenBank also identified several novel clades that should be recognised as novel species. For one of these novel clades, we were able to obtain a publicly available isolate (ATCC 35690
T
) that could serve as a type strain. The three new species were subjected to a polyphasic characterisation to confirm their taxonomic status. Cells of strains NRRL NRS-1210
T
, NRRL B-41110
T
and ATCC 35690
T
are Gram-staining positive, motile and form tan colonies. All three strains are obligate aerobic mesophiles with a broad pH range for growth. The two most prominent fatty acids of the three strains were identified as iso-C15:0 and anteiso-C15:0. The DNA G+C contents of strains NRRL NRS-1210
T
, NRRL B-41110
T
and ATCC 35690
T
are 47.2 mol%, 47.1 mol% and 47.3 mol%, respectively. Based on these characteristics, three novel species are proposed:
Brevibacillus fortis
sp. nov. (NRRL NRS-1210
T
= DSM 9886
T
= ATCC 51666
T
),
Brevibacillus porteri
sp. nov. (NRRL B-41110
T
= KACC 19693
T
) and
Brevibacillus schisleri
sp. nov. (ATCC 35690
T
= LMG 17055
T
).</description><subject>Antifungal activity</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Brevibacillus - classification</subject><subject>Brevibacillus - genetics</subject><subject>Brevibacillus - isolation & purification</subject><subject>Brevibacillus - metabolism</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty acids</subject><subject>Fatty Acids - chemistry</subject><subject>Fatty Acids - metabolism</subject><subject>Fungicides</subject><subject>Genome, Bacterial</subject><subject>Genomes</subject><subject>Homology</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Mesophiles</subject><subject>Microbiology</subject><subject>New species</subject><subject>Original Paper</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Soil Science & Conservation</subject><subject>Taxonomy</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kc1u1DAUhS0EokPhBVggS2xYkMF_iW12pSo_UiVYwNpy7JuOK08c7EnRvCJPVU-nFJQFC8u6Pt89tu9B6CUla0qIfFcoEYo1hOq6GGeNeIRWtJWs0Z3Wj9GKEMKbjkh2gp6Vcl1L3Sn5FJ1w0mkuuFih3982-5iuYEzb4LAdbdyXUHAa8G4D-EOGm9BbF2KcC-4PVcEuWg_vscVTTlMqNuIh5YpnADzCr0VTmcAFKG8Xx7VlFw7qGo_pZr2UpypDDg96fZlfGrtNKPEf6Dl6MthY4MX9fop-fLz4fv65ufz66cv52WXjuGx3jWSgrGoH4p0bnGRKEMadrgO1utV8qKX13gloveBgnfZdyzx4orqu72nLT9Gbo2_9_88Zys5sQ3EQox0hzcUwKrXgnVSqoq8X6HWacx3yHUWVplocDNmRcjmVkmEwUw5bm_eGEnNI2hyTNjVpc5e0EbXp1b313G_BP7T8ibYC_AiUKo1XkP_e_R_bW9SUt7M</recordid><startdate>20190701</startdate><enddate>20190701</enddate><creator>Johnson, Eric T.</creator><creator>Dunlap, Christopher A.</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PJZUB</scope><scope>PKEHL</scope><scope>PPXIY</scope><scope>PQEST</scope><scope>PQGLB</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-1100-0204</orcidid></search><sort><creationdate>20190701</creationdate><title>Phylogenomic analysis of the Brevibacillus brevis clade: a proposal for three new Brevibacillus species, Brevibacillus fortis sp. nov., Brevibacillus porteri sp. nov. and Brevibacillus schisleri sp. nov</title><author>Johnson, Eric T. ; Dunlap, Christopher A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-72e8a85f0dccfc7284023c9007a9593f402addc4e5d43eac9d652ded0866bb153</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Antifungal activity</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Brevibacillus - classification</topic><topic>Brevibacillus - genetics</topic><topic>Brevibacillus - isolation & purification</topic><topic>Brevibacillus - metabolism</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty acids</topic><topic>Fatty Acids - chemistry</topic><topic>Fatty Acids - metabolism</topic><topic>Fungicides</topic><topic>Genome, Bacterial</topic><topic>Genomes</topic><topic>Homology</topic><topic>Life Sciences</topic><topic>Medical Microbiology</topic><topic>Mesophiles</topic><topic>Microbiology</topic><topic>New species</topic><topic>Original Paper</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Soil Science & Conservation</topic><topic>Taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Johnson, Eric T.</creatorcontrib><creatorcontrib>Dunlap, Christopher A.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>Proquest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest Central (New)</collection><collection>ProQuest One Academic (New)</collection><collection>ProQuest Health & Medical Research Collection</collection><collection>ProQuest One Academic Middle East (New)</collection><collection>ProQuest One Health & Nursing</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Applied & Life Sciences</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Johnson, Eric T.</au><au>Dunlap, Christopher A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenomic analysis of the Brevibacillus brevis clade: a proposal for three new Brevibacillus species, Brevibacillus fortis sp. nov., Brevibacillus porteri sp. nov. and Brevibacillus schisleri sp. nov</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2019-07-01</date><risdate>2019</risdate><volume>112</volume><issue>7</issue><spage>991</spage><epage>999</epage><pages>991-999</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>During a screen for antifungal activity of
Brevibacillus
strains in the Northern Regional Research Laboratory collection we identified two strains with strong activity. Subsequent genomic sequencing and phylogenomic analysis revealed that these strains (NRRL NRS-1210
T
and NRRL B-41110
T
) are likely novel species. To confirm their taxonomic placement, we conducted a 16S rRNA phylogenetic analysis and subsequently sequenced the genomes of 10
Brevibacillus
type strains with a 16S homology > 97%. Phylogenomic analysis of these type strains and of representative
Brevibacillus
strains deposited in GenBank also identified several novel clades that should be recognised as novel species. For one of these novel clades, we were able to obtain a publicly available isolate (ATCC 35690
T
) that could serve as a type strain. The three new species were subjected to a polyphasic characterisation to confirm their taxonomic status. Cells of strains NRRL NRS-1210
T
, NRRL B-41110
T
and ATCC 35690
T
are Gram-staining positive, motile and form tan colonies. All three strains are obligate aerobic mesophiles with a broad pH range for growth. The two most prominent fatty acids of the three strains were identified as iso-C15:0 and anteiso-C15:0. The DNA G+C contents of strains NRRL NRS-1210
T
, NRRL B-41110
T
and ATCC 35690
T
are 47.2 mol%, 47.1 mol% and 47.3 mol%, respectively. Based on these characteristics, three novel species are proposed:
Brevibacillus fortis
sp. nov. (NRRL NRS-1210
T
= DSM 9886
T
= ATCC 51666
T
),
Brevibacillus porteri
sp. nov. (NRRL B-41110
T
= KACC 19693
T
) and
Brevibacillus schisleri
sp. nov. (ATCC 35690
T
= LMG 17055
T
).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>30693434</pmid><doi>10.1007/s10482-019-01232-4</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-1100-0204</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0003-6072 |
| ispartof | Antonie van Leeuwenhoek, 2019-07, Vol.112 (7), p.991-999 |
| issn | 0003-6072 1572-9699 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2179436788 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Antifungal activity Base Composition Biomedical and Life Sciences Brevibacillus - classification Brevibacillus - genetics Brevibacillus - isolation & purification Brevibacillus - metabolism Deoxyribonucleic acid DNA DNA, Bacterial - genetics DNA, Ribosomal - genetics Fatty acids Fatty Acids - chemistry Fatty Acids - metabolism Fungicides Genome, Bacterial Genomes Homology Life Sciences Medical Microbiology Mesophiles Microbiology New species Original Paper Phylogeny Plant Sciences RNA, Ribosomal, 16S - genetics rRNA 16S Soil Science & Conservation Taxonomy |
| title | Phylogenomic analysis of the Brevibacillus brevis clade: a proposal for three new Brevibacillus species, Brevibacillus fortis sp. nov., Brevibacillus porteri sp. nov. and Brevibacillus schisleri sp. nov |
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