On the application of balanced steady-state free precession to MR microscopy
Objective The applicability of the balanced steady-state free precession (bSSFP) sequence to the field of MR microscopy was investigated, since the potentially high SNR makes bSSFP attractive. However, particularly at ultra-high magnetic fields, a number of constraints emerge: the frequency sensitiv...
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Veröffentlicht in: | Magma (New York, N.Y.) N.Y.), 2019-08, Vol.32 (4), p.437-447 |
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creator | Bär, Sébastien Oerther, Thomas Weigel, Matthias Müller, Angelina Hucker, Patrick Korvink, Jan G. Ko, Cheng-Wen Wapler, Matthias C. Leupold, Jochen |
description | Objective
The applicability of the balanced steady-state free precession (bSSFP) sequence to the field of MR microscopy was investigated, since the potentially high SNR makes bSSFP attractive. However, particularly at ultra-high magnetic fields, a number of constraints emerge: the frequency sensitivity of the bSSFP signal, the duty cycle of the imaging gradients, and the intrinsic diffusion attenuation of the steady state due to the imaging gradients.
Materials and methods
Optimization of the bSSFP sequence was performed on three imaging systems (7 T and 9.4 T) suited for MR microscopy. Since biological samples are often imaged in the very proximity of materials from sample containers/holder or devices such as electrodes, several microscopy phantoms representing such circumstances were fabricated and examined with 3D bSSFP.
Results
Artifact-free microscopic bSSFP images could be obtained with voxel sizes down to 16 µm × 16 µm × 78 µm and with an SNR gain of 25% over standard gradient echo images.
Conclusion
With appropriate choice of phantom materials, optimization of the flip angle to the diffusion-attenuated steady state and protocols considering duty-cycle limitations, bSSFP can be a valuable tool in MR microscopy. |
doi_str_mv | 10.1007/s10334-019-00736-4 |
format | Article |
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The applicability of the balanced steady-state free precession (bSSFP) sequence to the field of MR microscopy was investigated, since the potentially high SNR makes bSSFP attractive. However, particularly at ultra-high magnetic fields, a number of constraints emerge: the frequency sensitivity of the bSSFP signal, the duty cycle of the imaging gradients, and the intrinsic diffusion attenuation of the steady state due to the imaging gradients.
Materials and methods
Optimization of the bSSFP sequence was performed on three imaging systems (7 T and 9.4 T) suited for MR microscopy. Since biological samples are often imaged in the very proximity of materials from sample containers/holder or devices such as electrodes, several microscopy phantoms representing such circumstances were fabricated and examined with 3D bSSFP.
Results
Artifact-free microscopic bSSFP images could be obtained with voxel sizes down to 16 µm × 16 µm × 78 µm and with an SNR gain of 25% over standard gradient echo images.
Conclusion
With appropriate choice of phantom materials, optimization of the flip angle to the diffusion-attenuated steady state and protocols considering duty-cycle limitations, bSSFP can be a valuable tool in MR microscopy.</description><identifier>ISSN: 0968-5243</identifier><identifier>EISSN: 1352-8661</identifier><identifier>DOI: 10.1007/s10334-019-00736-4</identifier><identifier>PMID: 30649708</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Algorithms ; Biomedical Engineering and Bioengineering ; Computer Appl. in Life Sciences ; Computer Simulation ; Health Informatics ; Image Enhancement ; Image Interpretation, Computer-Assisted - methods ; Image Processing, Computer-Assisted - methods ; Imaging ; Magnetic Fields ; Magnetic Resonance Imaging - methods ; Medicine ; Medicine & Public Health ; Microscopy - methods ; Phantoms, Imaging ; Radiology ; Reproducibility of Results ; Research Article ; Signal-To-Noise Ratio ; Solid State Physics ; Water</subject><ispartof>Magma (New York, N.Y.), 2019-08, Vol.32 (4), p.437-447</ispartof><rights>European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) 2019</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c335t-8b61b2d2d6b6d35ed0f9e97772d5bab408bb88d34cc7f690e66936a0dbac518c3</cites><orcidid>0000-0001-9453-8095</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10334-019-00736-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10334-019-00736-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30649708$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bär, Sébastien</creatorcontrib><creatorcontrib>Oerther, Thomas</creatorcontrib><creatorcontrib>Weigel, Matthias</creatorcontrib><creatorcontrib>Müller, Angelina</creatorcontrib><creatorcontrib>Hucker, Patrick</creatorcontrib><creatorcontrib>Korvink, Jan G.</creatorcontrib><creatorcontrib>Ko, Cheng-Wen</creatorcontrib><creatorcontrib>Wapler, Matthias C.</creatorcontrib><creatorcontrib>Leupold, Jochen</creatorcontrib><title>On the application of balanced steady-state free precession to MR microscopy</title><title>Magma (New York, N.Y.)</title><addtitle>Magn Reson Mater Phy</addtitle><addtitle>MAGMA</addtitle><description>Objective
The applicability of the balanced steady-state free precession (bSSFP) sequence to the field of MR microscopy was investigated, since the potentially high SNR makes bSSFP attractive. However, particularly at ultra-high magnetic fields, a number of constraints emerge: the frequency sensitivity of the bSSFP signal, the duty cycle of the imaging gradients, and the intrinsic diffusion attenuation of the steady state due to the imaging gradients.
Materials and methods
Optimization of the bSSFP sequence was performed on three imaging systems (7 T and 9.4 T) suited for MR microscopy. Since biological samples are often imaged in the very proximity of materials from sample containers/holder or devices such as electrodes, several microscopy phantoms representing such circumstances were fabricated and examined with 3D bSSFP.
Results
Artifact-free microscopic bSSFP images could be obtained with voxel sizes down to 16 µm × 16 µm × 78 µm and with an SNR gain of 25% over standard gradient echo images.
Conclusion
With appropriate choice of phantom materials, optimization of the flip angle to the diffusion-attenuated steady state and protocols considering duty-cycle limitations, bSSFP can be a valuable tool in MR microscopy.</description><subject>Algorithms</subject><subject>Biomedical Engineering and Bioengineering</subject><subject>Computer Appl. in Life Sciences</subject><subject>Computer Simulation</subject><subject>Health Informatics</subject><subject>Image Enhancement</subject><subject>Image Interpretation, Computer-Assisted - methods</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>Imaging</subject><subject>Magnetic Fields</subject><subject>Magnetic Resonance Imaging - methods</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Microscopy - methods</subject><subject>Phantoms, Imaging</subject><subject>Radiology</subject><subject>Reproducibility of Results</subject><subject>Research Article</subject><subject>Signal-To-Noise Ratio</subject><subject>Solid State Physics</subject><subject>Water</subject><issn>0968-5243</issn><issn>1352-8661</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kE1PwzAMhiMEYmPwBzigHLkEnKRNmyOa-JKGJiE4R_lwodPWlqQ97N_TscGRk2X58Sv7IeSSww0HKG4TBykzBlyzsZWKZUdkymUuWKkUPyZT0KpkucjkhJyltAIQPAd5SiYSVKYLKKdksWxo_4nUdt269rav24a2FXV2bRuPgaYebdiy1NseaRURaRfRY0o7sG_pyyvd1D62ybfd9pycVHad8OJQZ-T94f5t_sQWy8fn-d2CeSnznpVOcSeCCMqpIHMMUGnURVGIkDvrMiidK8sgM--LSmlApbRUFoKzPuellzNyvc_tYvs1YOrNpk4e1-PN2A7JCF7oDAC0GFGxR3c3poiV6WK9sXFrOJidRbO3aEaL5seiycalq0P-4DYY_lZ-tY2A3ANpHDUfGM2qHWIz_vxf7Dfe831U</recordid><startdate>20190801</startdate><enddate>20190801</enddate><creator>Bär, Sébastien</creator><creator>Oerther, Thomas</creator><creator>Weigel, Matthias</creator><creator>Müller, Angelina</creator><creator>Hucker, Patrick</creator><creator>Korvink, Jan G.</creator><creator>Ko, Cheng-Wen</creator><creator>Wapler, Matthias C.</creator><creator>Leupold, Jochen</creator><general>Springer International Publishing</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9453-8095</orcidid></search><sort><creationdate>20190801</creationdate><title>On the application of balanced steady-state free precession to MR microscopy</title><author>Bär, Sébastien ; Oerther, Thomas ; Weigel, Matthias ; Müller, Angelina ; Hucker, Patrick ; Korvink, Jan G. ; Ko, Cheng-Wen ; Wapler, Matthias C. ; Leupold, Jochen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-8b61b2d2d6b6d35ed0f9e97772d5bab408bb88d34cc7f690e66936a0dbac518c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Algorithms</topic><topic>Biomedical Engineering and Bioengineering</topic><topic>Computer Appl. in Life Sciences</topic><topic>Computer Simulation</topic><topic>Health Informatics</topic><topic>Image Enhancement</topic><topic>Image Interpretation, Computer-Assisted - methods</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>Imaging</topic><topic>Magnetic Fields</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Microscopy - methods</topic><topic>Phantoms, Imaging</topic><topic>Radiology</topic><topic>Reproducibility of Results</topic><topic>Research Article</topic><topic>Signal-To-Noise Ratio</topic><topic>Solid State Physics</topic><topic>Water</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bär, Sébastien</creatorcontrib><creatorcontrib>Oerther, Thomas</creatorcontrib><creatorcontrib>Weigel, Matthias</creatorcontrib><creatorcontrib>Müller, Angelina</creatorcontrib><creatorcontrib>Hucker, Patrick</creatorcontrib><creatorcontrib>Korvink, Jan G.</creatorcontrib><creatorcontrib>Ko, Cheng-Wen</creatorcontrib><creatorcontrib>Wapler, Matthias C.</creatorcontrib><creatorcontrib>Leupold, Jochen</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Magma (New York, N.Y.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bär, Sébastien</au><au>Oerther, Thomas</au><au>Weigel, Matthias</au><au>Müller, Angelina</au><au>Hucker, Patrick</au><au>Korvink, Jan G.</au><au>Ko, Cheng-Wen</au><au>Wapler, Matthias C.</au><au>Leupold, Jochen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>On the application of balanced steady-state free precession to MR microscopy</atitle><jtitle>Magma (New York, N.Y.)</jtitle><stitle>Magn Reson Mater Phy</stitle><addtitle>MAGMA</addtitle><date>2019-08-01</date><risdate>2019</risdate><volume>32</volume><issue>4</issue><spage>437</spage><epage>447</epage><pages>437-447</pages><issn>0968-5243</issn><eissn>1352-8661</eissn><abstract>Objective
The applicability of the balanced steady-state free precession (bSSFP) sequence to the field of MR microscopy was investigated, since the potentially high SNR makes bSSFP attractive. However, particularly at ultra-high magnetic fields, a number of constraints emerge: the frequency sensitivity of the bSSFP signal, the duty cycle of the imaging gradients, and the intrinsic diffusion attenuation of the steady state due to the imaging gradients.
Materials and methods
Optimization of the bSSFP sequence was performed on three imaging systems (7 T and 9.4 T) suited for MR microscopy. Since biological samples are often imaged in the very proximity of materials from sample containers/holder or devices such as electrodes, several microscopy phantoms representing such circumstances were fabricated and examined with 3D bSSFP.
Results
Artifact-free microscopic bSSFP images could be obtained with voxel sizes down to 16 µm × 16 µm × 78 µm and with an SNR gain of 25% over standard gradient echo images.
Conclusion
With appropriate choice of phantom materials, optimization of the flip angle to the diffusion-attenuated steady state and protocols considering duty-cycle limitations, bSSFP can be a valuable tool in MR microscopy.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>30649708</pmid><doi>10.1007/s10334-019-00736-4</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0001-9453-8095</orcidid></addata></record> |
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subjects | Algorithms Biomedical Engineering and Bioengineering Computer Appl. in Life Sciences Computer Simulation Health Informatics Image Enhancement Image Interpretation, Computer-Assisted - methods Image Processing, Computer-Assisted - methods Imaging Magnetic Fields Magnetic Resonance Imaging - methods Medicine Medicine & Public Health Microscopy - methods Phantoms, Imaging Radiology Reproducibility of Results Research Article Signal-To-Noise Ratio Solid State Physics Water |
title | On the application of balanced steady-state free precession to MR microscopy |
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