Moisture Is More Important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland
Moisture and temperature play important roles in the assembly and functioning of prokaryotic communities in soil. However, how moisture and temperature regulate the function of niche- versus neutral-based processes during the assembly of these communities has not been examined considering both the t...
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| Veröffentlicht in: | Microbial ecology 2019-02, Vol.77 (2), p.460-470 |
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| creator | Lupatini, Manoeli Suleiman, Afnan K. A. Jacques, Rodrigo J. S. Lemos, Leandro N. Pylro, Victor S. Van Veen, Johannes A. Kuramae, Eiko E. Roesch, Luiz F. W. |
| description | Moisture and temperature play important roles in the assembly and functioning of prokaryotic communities in soil. However, how moisture and temperature regulate the function of niche- versus neutral-based processes during the assembly of these communities has not been examined considering both the total microbial community and the sole active portion with potential for growth in native subtropical grassland. We set up a well-controlled microcosm-based experiment to investigate the individual and combined effects of moisture and temperature on soil prokaryotic communities by simulating subtropical seasons in grassland. The prokaryotic populations with potential for growth and the total prokaryotic community were assessed by 16S rRNA transcript and 16S rRNA gene analyses, respectively. Moisture was the major factor influencing community diversity and structure, with a considerable effect of this factor on the total community. The prokaryotic populations with potential for growth and the total communities were influenced by the same assembly rules, with the niche-based mechanism being more influential in communities under dry condition. Our results provide new information regarding moisture and temperature in microbial communities of soil and elucidate how coexisting prokaryotic populations, under different physiological statuses, are shaped in native subtropical grassland soil. |
| doi_str_mv | 10.1007/s00248-018-1310-1 |
| format | Article |
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A. ; Jacques, Rodrigo J. S. ; Lemos, Leandro N. ; Pylro, Victor S. ; Van Veen, Johannes A. ; Kuramae, Eiko E. ; Roesch, Luiz F. W.</creator><creatorcontrib>Lupatini, Manoeli ; Suleiman, Afnan K. A. ; Jacques, Rodrigo J. S. ; Lemos, Leandro N. ; Pylro, Victor S. ; Van Veen, Johannes A. ; Kuramae, Eiko E. ; Roesch, Luiz F. W.</creatorcontrib><description>Moisture and temperature play important roles in the assembly and functioning of prokaryotic communities in soil. However, how moisture and temperature regulate the function of niche- versus neutral-based processes during the assembly of these communities has not been examined considering both the total microbial community and the sole active portion with potential for growth in native subtropical grassland. We set up a well-controlled microcosm-based experiment to investigate the individual and combined effects of moisture and temperature on soil prokaryotic communities by simulating subtropical seasons in grassland. The prokaryotic populations with potential for growth and the total prokaryotic community were assessed by 16S rRNA transcript and 16S rRNA gene analyses, respectively. Moisture was the major factor influencing community diversity and structure, with a considerable effect of this factor on the total community. The prokaryotic populations with potential for growth and the total communities were influenced by the same assembly rules, with the niche-based mechanism being more influential in communities under dry condition. Our results provide new information regarding moisture and temperature in microbial communities of soil and elucidate how coexisting prokaryotic populations, under different physiological statuses, are shaped in native subtropical grassland soil.</description><identifier>ISSN: 0095-3628</identifier><identifier>EISSN: 1432-184X</identifier><identifier>DOI: 10.1007/s00248-018-1310-1</identifier><identifier>PMID: 30607437</identifier><language>eng</language><publisher>New York: Springer Science + Business Media</publisher><subject>Assembly ; Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; Biodiversity ; Biomedical and Life Sciences ; Communities ; Community composition ; DNA, Bacterial - genetics ; Ecology ; Geoecology/Natural Processes ; Grassland ; Grasslands ; Growth ; Life Sciences ; Microbial activity ; Microbial Ecology ; Microbiology ; Microorganisms ; Nature Conservation ; Niches ; Phylogeny ; Populations ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Soil ; Soil - chemistry ; SOIL MICROBIOLOGY ; Soil moisture ; Soil temperature ; Species diversity ; Temperature ; Temperature effects ; Transcription ; Water - analysis ; Water - metabolism ; Water Quality/Water Pollution</subject><ispartof>Microbial ecology, 2019-02, Vol.77 (2), p.460-470</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2019</rights><rights>Microbial Ecology is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c394t-ffccb28165fb77b9537bf00013bba80e36ff024bd97cc6cf688219c0270b18cf3</citedby><cites>FETCH-LOGICAL-c394t-ffccb28165fb77b9537bf00013bba80e36ff024bd97cc6cf688219c0270b18cf3</cites><orcidid>0000-0003-2154-9150</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/48701852$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/48701852$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27924,27925,41488,42557,51319,58017,58250</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30607437$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lupatini, Manoeli</creatorcontrib><creatorcontrib>Suleiman, Afnan K. A.</creatorcontrib><creatorcontrib>Jacques, Rodrigo J. S.</creatorcontrib><creatorcontrib>Lemos, Leandro N.</creatorcontrib><creatorcontrib>Pylro, Victor S.</creatorcontrib><creatorcontrib>Van Veen, Johannes A.</creatorcontrib><creatorcontrib>Kuramae, Eiko E.</creatorcontrib><creatorcontrib>Roesch, Luiz F. W.</creatorcontrib><title>Moisture Is More Important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland</title><title>Microbial ecology</title><addtitle>Microb Ecol</addtitle><addtitle>Microb Ecol</addtitle><description>Moisture and temperature play important roles in the assembly and functioning of prokaryotic communities in soil. However, how moisture and temperature regulate the function of niche- versus neutral-based processes during the assembly of these communities has not been examined considering both the total microbial community and the sole active portion with potential for growth in native subtropical grassland. We set up a well-controlled microcosm-based experiment to investigate the individual and combined effects of moisture and temperature on soil prokaryotic communities by simulating subtropical seasons in grassland. The prokaryotic populations with potential for growth and the total prokaryotic community were assessed by 16S rRNA transcript and 16S rRNA gene analyses, respectively. Moisture was the major factor influencing community diversity and structure, with a considerable effect of this factor on the total community. The prokaryotic populations with potential for growth and the total communities were influenced by the same assembly rules, with the niche-based mechanism being more influential in communities under dry condition. Our results provide new information regarding moisture and temperature in microbial communities of soil and elucidate how coexisting prokaryotic populations, under different physiological statuses, are shaped in native subtropical grassland soil.</description><subject>Assembly</subject><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation & purification</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Communities</subject><subject>Community composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Ecology</subject><subject>Geoecology/Natural Processes</subject><subject>Grassland</subject><subject>Grasslands</subject><subject>Growth</subject><subject>Life Sciences</subject><subject>Microbial activity</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Nature Conservation</subject><subject>Niches</subject><subject>Phylogeny</subject><subject>Populations</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Soil</subject><subject>Soil - chemistry</subject><subject>SOIL MICROBIOLOGY</subject><subject>Soil moisture</subject><subject>Soil temperature</subject><subject>Species diversity</subject><subject>Temperature</subject><subject>Temperature effects</subject><subject>Transcription</subject><subject>Water - analysis</subject><subject>Water - metabolism</subject><subject>Water Quality/Water Pollution</subject><issn>0095-3628</issn><issn>1432-184X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kcFu1DAQhi0EotuFB-AAssSll8DYzsbOcVlBqdSKShTBzbK9NusliYPtIPUleGYcUorEgdNI4-__PTM_Qs8IvCIA_HUCoLWogIiKMAIVeYBWpGa0IqL-8hCtANpNxRoqTtBpSkcAwhvKHqMTBg3wmvEV-nkVfMpTtPgi4asw134MMash43xQA76x_Wij-o24EPE2Jdvr7hYHh9-EfMDXIdshe9WV3tZk_8NiNezx50PoLL6O4ZuKtyF7g3eh76fBZ28T9gP-OOkcw-iN6vB5VCl1RfYEPXKqS_bpXV2jT-_e3uzeV5cfzi9228vKsLbOlXPGaCpIs3Gac91uGNcOyn5MayXAssa5chq9b7kxjXGNEJS0BigHTYRxbI3OFt8xhu-TTVn2PhnblRlsmJKkpKkJENqQgr78Bz2GKQ5lupmiLRV1OeoakYUyMaQUrZNj9H1ZXRKQc1hyCUuWsOQclpydX9w5T7q3-3vFn3QKQBcglafhq41_v_6f6_NFdEw5xHvTWvACbSj7BZx3qqU</recordid><startdate>20190201</startdate><enddate>20190201</enddate><creator>Lupatini, Manoeli</creator><creator>Suleiman, Afnan K. 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A.</au><au>Jacques, Rodrigo J. S.</au><au>Lemos, Leandro N.</au><au>Pylro, Victor S.</au><au>Van Veen, Johannes A.</au><au>Kuramae, Eiko E.</au><au>Roesch, Luiz F. W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Moisture Is More Important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland</atitle><jtitle>Microbial ecology</jtitle><stitle>Microb Ecol</stitle><addtitle>Microb Ecol</addtitle><date>2019-02-01</date><risdate>2019</risdate><volume>77</volume><issue>2</issue><spage>460</spage><epage>470</epage><pages>460-470</pages><issn>0095-3628</issn><eissn>1432-184X</eissn><abstract>Moisture and temperature play important roles in the assembly and functioning of prokaryotic communities in soil. However, how moisture and temperature regulate the function of niche- versus neutral-based processes during the assembly of these communities has not been examined considering both the total microbial community and the sole active portion with potential for growth in native subtropical grassland. We set up a well-controlled microcosm-based experiment to investigate the individual and combined effects of moisture and temperature on soil prokaryotic communities by simulating subtropical seasons in grassland. The prokaryotic populations with potential for growth and the total prokaryotic community were assessed by 16S rRNA transcript and 16S rRNA gene analyses, respectively. Moisture was the major factor influencing community diversity and structure, with a considerable effect of this factor on the total community. The prokaryotic populations with potential for growth and the total communities were influenced by the same assembly rules, with the niche-based mechanism being more influential in communities under dry condition. Our results provide new information regarding moisture and temperature in microbial communities of soil and elucidate how coexisting prokaryotic populations, under different physiological statuses, are shaped in native subtropical grassland soil.</abstract><cop>New York</cop><pub>Springer Science + Business Media</pub><pmid>30607437</pmid><doi>10.1007/s00248-018-1310-1</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0003-2154-9150</orcidid></addata></record> |
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| subjects | Assembly Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Biodiversity Biomedical and Life Sciences Communities Community composition DNA, Bacterial - genetics Ecology Geoecology/Natural Processes Grassland Grasslands Growth Life Sciences Microbial activity Microbial Ecology Microbiology Microorganisms Nature Conservation Niches Phylogeny Populations RNA, Ribosomal, 16S - genetics rRNA 16S Soil Soil - chemistry SOIL MICROBIOLOGY Soil moisture Soil temperature Species diversity Temperature Temperature effects Transcription Water - analysis Water - metabolism Water Quality/Water Pollution |
| title | Moisture Is More Important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland |
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