Nevskia lacus sp. nov., a gammaproteobacterium isolated from a eutrophic lake
A novel Gram-stain negative, rod-shaped and motile bacterial strain, designated strain Seoho-38 T , was isolated from a eutrophic lake in South Korea. Polyphasic taxonomic studies were performed to investigate the taxonomic position of the new isolate. The phylogenetic analysis based on the 16S rRNA...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2019-05, Vol.112 (5), p.723-729 |
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| creator | Cui, Yingshun Chun, Seong-Jun Cho, A-Ra Wong, Shu Kuan Lee, Hyung-Gwan Oh, Hee-Mock Ahn, Chi-Yong |
| description | A novel Gram-stain negative, rod-shaped and motile bacterial strain, designated strain Seoho-38
T
, was isolated from a eutrophic lake in South Korea. Polyphasic taxonomic studies were performed to investigate the taxonomic position of the new isolate. The phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain Seoho-38
T
formed a distinct cluster with
Nevskia ramosa
Soe1
T
,
Nevskia persephonica
G6M-30
T
,
Nevskia soli
GR15-1
T
,
Nevskia terrae
KIS13-15
T
and
Nevskia aquatilis
F2-63
T
with bootstrap resampling value of 100%. Of those
Nevskia
strains, the new isolate shows high sequence similarity with
N. ramosa
Soe1
T
(98.7%) and
N. persephonica
G6M-30
T
(97.2%), and values lower than 96.5% with the other type strains. The new isolate was observed to grow aerobically in 0–1.5% (w/v) NaCl (optimum 0%), at pH 7.0–9.0 (optimum pH 7.0) and temperature 15–36 °C (optimum 20–30 °C) on R2A medium. DNA–DNA relatedness values between strain Seoho-38
T
and the type strains of reference species in the genus
Nevskia
were |
| doi_str_mv | 10.1007/s10482-018-1206-6 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2149022170</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2139824583</sourcerecordid><originalsourceid>FETCH-LOGICAL-c372t-5b9f02072ef58f0d2afc22947141d09fdf38b98ce39dbe20ebcadf5cb261c1c33</originalsourceid><addsrcrecordid>eNp1kE1LAzEQhoMoWqs_wIssePHg1snsZ45S_AI_LnoO2eykrt1tarJb8N-b0qogeApDnnnm5WXshMOEAxSXnkNaYgy8jDlCHuc7bMSzAmORC7HLRgCQxDkUeMAOvX8Po8jLYp8dJJBBjgUfsccnWvl5o6JW6cFHfjmJFnY1uYhUNFNdp5bO9mQrpXtyzdBFjbet6qmOjLNdgGjonV2-NToI5nTE9oxqPR1v3zF7vbl-md7FD8-399Orh1gnBfZxVgkDGHKRyUoDNSqjEUVa8JTXIExtkrISpaZE1BUhUKVVbTJdYc4110kyZucbb4j3MZDvZdd4TW2rFmQHL5GnAhB5AQE9-4O-28EtQrpAJaLENCvXQr6htLPeOzJy6ZpOuU_JQa67lpuuZeharruWedg53ZqHqqP6Z-O73ADgBvDhazEj93v6f-sX0peI1g</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2139824583</pqid></control><display><type>article</type><title>Nevskia lacus sp. nov., a gammaproteobacterium isolated from a eutrophic lake</title><source>SpringerLink Journals - AutoHoldings</source><creator>Cui, Yingshun ; Chun, Seong-Jun ; Cho, A-Ra ; Wong, Shu Kuan ; Lee, Hyung-Gwan ; Oh, Hee-Mock ; Ahn, Chi-Yong</creator><creatorcontrib>Cui, Yingshun ; Chun, Seong-Jun ; Cho, A-Ra ; Wong, Shu Kuan ; Lee, Hyung-Gwan ; Oh, Hee-Mock ; Ahn, Chi-Yong</creatorcontrib><description>A novel Gram-stain negative, rod-shaped and motile bacterial strain, designated strain Seoho-38
T
, was isolated from a eutrophic lake in South Korea. Polyphasic taxonomic studies were performed to investigate the taxonomic position of the new isolate. The phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain Seoho-38
T
formed a distinct cluster with
Nevskia ramosa
Soe1
T
,
Nevskia persephonica
G6M-30
T
,
Nevskia soli
GR15-1
T
,
Nevskia terrae
KIS13-15
T
and
Nevskia aquatilis
F2-63
T
with bootstrap resampling value of 100%. Of those
Nevskia
strains, the new isolate shows high sequence similarity with
N. ramosa
Soe1
T
(98.7%) and
N. persephonica
G6M-30
T
(97.2%), and values lower than 96.5% with the other type strains. The new isolate was observed to grow aerobically in 0–1.5% (w/v) NaCl (optimum 0%), at pH 7.0–9.0 (optimum pH 7.0) and temperature 15–36 °C (optimum 20–30 °C) on R2A medium. DNA–DNA relatedness values between strain Seoho-38
T
and the type strains of reference species in the genus
Nevskia
were < 24%. The genomic DNA G + C content was determined to be 67.4 mol%. Ubiquinone-8 (Q-8) (95%) and ubiquinone-7 (Q-7) (5%) were identified as the respiratory quinones. The cellular polar lipids were identified as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, a phosphoaminolipid, two glycolipids, an aminolipid and four unidentified lipids. The major fatty acid components were found to include summed feature 3 (C
16:1
ω
7
c
and/or C
16:1
ω
6
c
), summed feature 8 (C
18:0
ω
7
c
and/or C
18:0
ω
6
c
), C
16:0
and C
14:0
. Based on the above polyphasic evidence, strain Seoho-38
T
(= KCTC 52221
T
= JCM 31888
T
) represents a new species of the genus
Nevskia
, for which the name
Nevskia lacus
sp. nov. is proposed.</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-018-1206-6</identifier><identifier>PMID: 30506271</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Biomedical and Life Sciences ; Cardiolipin ; Coenzyme Q8 ; Deoxyribonucleic acid ; DNA ; Eutrophic lakes ; Eutrophication ; Gene sequencing ; Glycolipids ; Life Sciences ; Lipids ; Medical Microbiology ; Microbiology ; New species ; Original Paper ; pH effects ; Phosphatidylethanolamine ; Phosphatidylglycerol ; Phylogeny ; Plant Sciences ; Quinones ; Resampling ; rRNA 16S ; Sodium chloride ; Soil Science & Conservation ; Strains (organisms) ; Taxonomy ; Ubiquinone</subject><ispartof>Antonie van Leeuwenhoek, 2019-05, Vol.112 (5), p.723-729</ispartof><rights>Springer Nature Switzerland AG 2018</rights><rights>Antonie van Leeuwenhoek is a copyright of Springer, (2018). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c372t-5b9f02072ef58f0d2afc22947141d09fdf38b98ce39dbe20ebcadf5cb261c1c33</citedby><cites>FETCH-LOGICAL-c372t-5b9f02072ef58f0d2afc22947141d09fdf38b98ce39dbe20ebcadf5cb261c1c33</cites><orcidid>0000-0002-9626-2755</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-018-1206-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-018-1206-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30506271$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cui, Yingshun</creatorcontrib><creatorcontrib>Chun, Seong-Jun</creatorcontrib><creatorcontrib>Cho, A-Ra</creatorcontrib><creatorcontrib>Wong, Shu Kuan</creatorcontrib><creatorcontrib>Lee, Hyung-Gwan</creatorcontrib><creatorcontrib>Oh, Hee-Mock</creatorcontrib><creatorcontrib>Ahn, Chi-Yong</creatorcontrib><title>Nevskia lacus sp. nov., a gammaproteobacterium isolated from a eutrophic lake</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>A novel Gram-stain negative, rod-shaped and motile bacterial strain, designated strain Seoho-38
T
, was isolated from a eutrophic lake in South Korea. Polyphasic taxonomic studies were performed to investigate the taxonomic position of the new isolate. The phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain Seoho-38
T
formed a distinct cluster with
Nevskia ramosa
Soe1
T
,
Nevskia persephonica
G6M-30
T
,
Nevskia soli
GR15-1
T
,
Nevskia terrae
KIS13-15
T
and
Nevskia aquatilis
F2-63
T
with bootstrap resampling value of 100%. Of those
Nevskia
strains, the new isolate shows high sequence similarity with
N. ramosa
Soe1
T
(98.7%) and
N. persephonica
G6M-30
T
(97.2%), and values lower than 96.5% with the other type strains. The new isolate was observed to grow aerobically in 0–1.5% (w/v) NaCl (optimum 0%), at pH 7.0–9.0 (optimum pH 7.0) and temperature 15–36 °C (optimum 20–30 °C) on R2A medium. DNA–DNA relatedness values between strain Seoho-38
T
and the type strains of reference species in the genus
Nevskia
were < 24%. The genomic DNA G + C content was determined to be 67.4 mol%. Ubiquinone-8 (Q-8) (95%) and ubiquinone-7 (Q-7) (5%) were identified as the respiratory quinones. The cellular polar lipids were identified as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, a phosphoaminolipid, two glycolipids, an aminolipid and four unidentified lipids. The major fatty acid components were found to include summed feature 3 (C
16:1
ω
7
c
and/or C
16:1
ω
6
c
), summed feature 8 (C
18:0
ω
7
c
and/or C
18:0
ω
6
c
), C
16:0
and C
14:0
. Based on the above polyphasic evidence, strain Seoho-38
T
(= KCTC 52221
T
= JCM 31888
T
) represents a new species of the genus
Nevskia
, for which the name
Nevskia lacus
sp. nov. is proposed.</description><subject>Biomedical and Life Sciences</subject><subject>Cardiolipin</subject><subject>Coenzyme Q8</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Eutrophic lakes</subject><subject>Eutrophication</subject><subject>Gene sequencing</subject><subject>Glycolipids</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>New species</subject><subject>Original Paper</subject><subject>pH effects</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylglycerol</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>Quinones</subject><subject>Resampling</subject><subject>rRNA 16S</subject><subject>Sodium chloride</subject><subject>Soil Science & Conservation</subject><subject>Strains (organisms)</subject><subject>Taxonomy</subject><subject>Ubiquinone</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kE1LAzEQhoMoWqs_wIssePHg1snsZ45S_AI_LnoO2eykrt1tarJb8N-b0qogeApDnnnm5WXshMOEAxSXnkNaYgy8jDlCHuc7bMSzAmORC7HLRgCQxDkUeMAOvX8Po8jLYp8dJJBBjgUfsccnWvl5o6JW6cFHfjmJFnY1uYhUNFNdp5bO9mQrpXtyzdBFjbet6qmOjLNdgGjonV2-NToI5nTE9oxqPR1v3zF7vbl-md7FD8-399Orh1gnBfZxVgkDGHKRyUoDNSqjEUVa8JTXIExtkrISpaZE1BUhUKVVbTJdYc4110kyZucbb4j3MZDvZdd4TW2rFmQHL5GnAhB5AQE9-4O-28EtQrpAJaLENCvXQr6htLPeOzJy6ZpOuU_JQa67lpuuZeharruWedg53ZqHqqP6Z-O73ADgBvDhazEj93v6f-sX0peI1g</recordid><startdate>20190501</startdate><enddate>20190501</enddate><creator>Cui, Yingshun</creator><creator>Chun, Seong-Jun</creator><creator>Cho, A-Ra</creator><creator>Wong, Shu Kuan</creator><creator>Lee, Hyung-Gwan</creator><creator>Oh, Hee-Mock</creator><creator>Ahn, Chi-Yong</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-9626-2755</orcidid></search><sort><creationdate>20190501</creationdate><title>Nevskia lacus sp. nov., a gammaproteobacterium isolated from a eutrophic lake</title><author>Cui, Yingshun ; Chun, Seong-Jun ; Cho, A-Ra ; Wong, Shu Kuan ; Lee, Hyung-Gwan ; Oh, Hee-Mock ; Ahn, Chi-Yong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c372t-5b9f02072ef58f0d2afc22947141d09fdf38b98ce39dbe20ebcadf5cb261c1c33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Biomedical and Life Sciences</topic><topic>Cardiolipin</topic><topic>Coenzyme Q8</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Eutrophic lakes</topic><topic>Eutrophication</topic><topic>Gene sequencing</topic><topic>Glycolipids</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>New species</topic><topic>Original Paper</topic><topic>pH effects</topic><topic>Phosphatidylethanolamine</topic><topic>Phosphatidylglycerol</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>Quinones</topic><topic>Resampling</topic><topic>rRNA 16S</topic><topic>Sodium chloride</topic><topic>Soil Science & Conservation</topic><topic>Strains (organisms)</topic><topic>Taxonomy</topic><topic>Ubiquinone</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cui, Yingshun</creatorcontrib><creatorcontrib>Chun, Seong-Jun</creatorcontrib><creatorcontrib>Cho, A-Ra</creatorcontrib><creatorcontrib>Wong, Shu Kuan</creatorcontrib><creatorcontrib>Lee, Hyung-Gwan</creatorcontrib><creatorcontrib>Oh, Hee-Mock</creatorcontrib><creatorcontrib>Ahn, Chi-Yong</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts 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Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cui, Yingshun</au><au>Chun, Seong-Jun</au><au>Cho, A-Ra</au><au>Wong, Shu Kuan</au><au>Lee, Hyung-Gwan</au><au>Oh, Hee-Mock</au><au>Ahn, Chi-Yong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Nevskia lacus sp. nov., a gammaproteobacterium isolated from a eutrophic lake</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2019-05-01</date><risdate>2019</risdate><volume>112</volume><issue>5</issue><spage>723</spage><epage>729</epage><pages>723-729</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>A novel Gram-stain negative, rod-shaped and motile bacterial strain, designated strain Seoho-38
T
, was isolated from a eutrophic lake in South Korea. Polyphasic taxonomic studies were performed to investigate the taxonomic position of the new isolate. The phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain Seoho-38
T
formed a distinct cluster with
Nevskia ramosa
Soe1
T
,
Nevskia persephonica
G6M-30
T
,
Nevskia soli
GR15-1
T
,
Nevskia terrae
KIS13-15
T
and
Nevskia aquatilis
F2-63
T
with bootstrap resampling value of 100%. Of those
Nevskia
strains, the new isolate shows high sequence similarity with
N. ramosa
Soe1
T
(98.7%) and
N. persephonica
G6M-30
T
(97.2%), and values lower than 96.5% with the other type strains. The new isolate was observed to grow aerobically in 0–1.5% (w/v) NaCl (optimum 0%), at pH 7.0–9.0 (optimum pH 7.0) and temperature 15–36 °C (optimum 20–30 °C) on R2A medium. DNA–DNA relatedness values between strain Seoho-38
T
and the type strains of reference species in the genus
Nevskia
were < 24%. The genomic DNA G + C content was determined to be 67.4 mol%. Ubiquinone-8 (Q-8) (95%) and ubiquinone-7 (Q-7) (5%) were identified as the respiratory quinones. The cellular polar lipids were identified as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, a phosphoaminolipid, two glycolipids, an aminolipid and four unidentified lipids. The major fatty acid components were found to include summed feature 3 (C
16:1
ω
7
c
and/or C
16:1
ω
6
c
), summed feature 8 (C
18:0
ω
7
c
and/or C
18:0
ω
6
c
), C
16:0
and C
14:0
. Based on the above polyphasic evidence, strain Seoho-38
T
(= KCTC 52221
T
= JCM 31888
T
) represents a new species of the genus
Nevskia
, for which the name
Nevskia lacus
sp. nov. is proposed.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>30506271</pmid><doi>10.1007/s10482-018-1206-6</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-9626-2755</orcidid></addata></record> |
| fulltext | fulltext |
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| ispartof | Antonie van Leeuwenhoek, 2019-05, Vol.112 (5), p.723-729 |
| issn | 0003-6072 1572-9699 |
| language | eng |
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| source | SpringerLink Journals - AutoHoldings |
| subjects | Biomedical and Life Sciences Cardiolipin Coenzyme Q8 Deoxyribonucleic acid DNA Eutrophic lakes Eutrophication Gene sequencing Glycolipids Life Sciences Lipids Medical Microbiology Microbiology New species Original Paper pH effects Phosphatidylethanolamine Phosphatidylglycerol Phylogeny Plant Sciences Quinones Resampling rRNA 16S Sodium chloride Soil Science & Conservation Strains (organisms) Taxonomy Ubiquinone |
| title | Nevskia lacus sp. nov., a gammaproteobacterium isolated from a eutrophic lake |
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