Dyella tabacisoli sp. nov., a bacterium isolated from an arable soil sample of Nicotiana tabacum L
A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, designated strain L4-6 , was isolated from an arable soil sample of tobacco in Huize, south-western China and subjected to polyphasic taxonomic characterization. The cells showed oxidase-positive and catalase-positive reactions. Gr...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2019-11, Vol.69 (11), p.3338-3343 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Li, Qing-Qing Chen, Xing Zhou, Xing-Kui Dong, Li-Min Xiao, Min Fang, Bao-Zhu Li, Wen-Jun Duan, Yan-Qing |
| description | A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, designated strain L4-6
, was isolated from an arable soil sample of tobacco in Huize, south-western China and subjected to polyphasic taxonomic characterization. The cells showed oxidase-positive and catalase-positive reactions. Growth occurred at 20-35 °C, at pH 5.0-8.0 and with 0-2 % (w/v) NaCl, optimally at 30 °C, pH 6.0-7.0 and 0-1 % (w/v) NaCl. The major respiratory lipoquinone was ubiquinone-8. The predominant cellular fatty acids (>10.0 %) were identified as summed feature 9 (iso-C
ω9
or C
10-methyl), iso-C
and iso-C
. The polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unidentified phospholipids, two unidentified aminophospholipids and five unidentified aminolipids. The genomic DNA G+C content was 60.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain L4-6
should be affiliated to the genus
and formed a clade with the most closely related organism
JS12-10
. 16S rRNA gene sequences similarity analysis showed that strain L4-6
was mostly closely related to
JS12-10
(98.73 %) and
DHOB07
(98.02 %). DNA-DNA hybridization data indicated that strain L4-6
represented a novel genomic species belonging to the genus
. The polyphasic taxonomic characteristics indicated that the strain L4-6
represents a novel species of the genus
, for which the name
sp. nov. (type strain L4-6
=CGMCC 1.16273
=KCTC 62035
) is proposed. |
| doi_str_mv | 10.1099/ijsem.0.003138 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2139582565</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2139582565</sourcerecordid><originalsourceid>FETCH-LOGICAL-c335t-91e89a00974603dbc922c5a60e0795ba15703469e31f226f6cda8ae12141a5ef3</originalsourceid><addsrcrecordid>eNo9UMtOwzAQtBCIlsKVI_KRAwlrO3biIypPqYILnKON40iukjrECVL_HpeWnna0OzPaGUKuGaQMtL5362C7FFIAwURxQuYsUyqRILLTI-ZqRi5CWAPEBcA5mQnICs1FPifV49a2LdIRKzQu-NbR0Kd043_SO4o0Lkc7uKmjuxuOtqbN4DuKG4oDVq2lwbuWBuz6iH1D353xo8PNwTEKV5fkrME22KvDXJCv56fP5Wuy-nh5Wz6sEiOEHBPNbKERQOfxSVFXRnNuJCqwkGtZIZN5TKW0FazhXDXK1FigZZxlDKVtxILc7n37wX9PNoxl54LZpdtYP4WSM6FlwaWSkZruqWbwIQy2KfvBdThsSwblrtfyr9cSyn2vUXBz8J6qztZH-n-R4hfMH3M7</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2139582565</pqid></control><display><type>article</type><title>Dyella tabacisoli sp. nov., a bacterium isolated from an arable soil sample of Nicotiana tabacum L</title><source>MEDLINE</source><source>Microbiology Society</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Li, Qing-Qing ; Chen, Xing ; Zhou, Xing-Kui ; Dong, Li-Min ; Xiao, Min ; Fang, Bao-Zhu ; Li, Wen-Jun ; Duan, Yan-Qing</creator><creatorcontrib>Li, Qing-Qing ; Chen, Xing ; Zhou, Xing-Kui ; Dong, Li-Min ; Xiao, Min ; Fang, Bao-Zhu ; Li, Wen-Jun ; Duan, Yan-Qing</creatorcontrib><description>A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, designated strain L4-6
, was isolated from an arable soil sample of tobacco in Huize, south-western China and subjected to polyphasic taxonomic characterization. The cells showed oxidase-positive and catalase-positive reactions. Growth occurred at 20-35 °C, at pH 5.0-8.0 and with 0-2 % (w/v) NaCl, optimally at 30 °C, pH 6.0-7.0 and 0-1 % (w/v) NaCl. The major respiratory lipoquinone was ubiquinone-8. The predominant cellular fatty acids (>10.0 %) were identified as summed feature 9 (iso-C
ω9
or C
10-methyl), iso-C
and iso-C
. The polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unidentified phospholipids, two unidentified aminophospholipids and five unidentified aminolipids. The genomic DNA G+C content was 60.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain L4-6
should be affiliated to the genus
and formed a clade with the most closely related organism
JS12-10
. 16S rRNA gene sequences similarity analysis showed that strain L4-6
was mostly closely related to
JS12-10
(98.73 %) and
DHOB07
(98.02 %). DNA-DNA hybridization data indicated that strain L4-6
represented a novel genomic species belonging to the genus
. The polyphasic taxonomic characteristics indicated that the strain L4-6
represents a novel species of the genus
, for which the name
sp. nov. (type strain L4-6
=CGMCC 1.16273
=KCTC 62035
) is proposed.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.003138</identifier><identifier>PMID: 30489237</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; China ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Nicotiana - microbiology ; Nucleic Acid Hybridization ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Ubiquinone - chemistry ; Xanthomonadaceae - classification ; Xanthomonadaceae - isolation & purification</subject><ispartof>International journal of systematic and evolutionary microbiology, 2019-11, Vol.69 (11), p.3338-3343</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-91e89a00974603dbc922c5a60e0795ba15703469e31f226f6cda8ae12141a5ef3</citedby><cites>FETCH-LOGICAL-c335t-91e89a00974603dbc922c5a60e0795ba15703469e31f226f6cda8ae12141a5ef3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,3733,27905,27906</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30489237$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Qing-Qing</creatorcontrib><creatorcontrib>Chen, Xing</creatorcontrib><creatorcontrib>Zhou, Xing-Kui</creatorcontrib><creatorcontrib>Dong, Li-Min</creatorcontrib><creatorcontrib>Xiao, Min</creatorcontrib><creatorcontrib>Fang, Bao-Zhu</creatorcontrib><creatorcontrib>Li, Wen-Jun</creatorcontrib><creatorcontrib>Duan, Yan-Qing</creatorcontrib><title>Dyella tabacisoli sp. nov., a bacterium isolated from an arable soil sample of Nicotiana tabacum L</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, designated strain L4-6
, was isolated from an arable soil sample of tobacco in Huize, south-western China and subjected to polyphasic taxonomic characterization. The cells showed oxidase-positive and catalase-positive reactions. Growth occurred at 20-35 °C, at pH 5.0-8.0 and with 0-2 % (w/v) NaCl, optimally at 30 °C, pH 6.0-7.0 and 0-1 % (w/v) NaCl. The major respiratory lipoquinone was ubiquinone-8. The predominant cellular fatty acids (>10.0 %) were identified as summed feature 9 (iso-C
ω9
or C
10-methyl), iso-C
and iso-C
. The polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unidentified phospholipids, two unidentified aminophospholipids and five unidentified aminolipids. The genomic DNA G+C content was 60.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain L4-6
should be affiliated to the genus
and formed a clade with the most closely related organism
JS12-10
. 16S rRNA gene sequences similarity analysis showed that strain L4-6
was mostly closely related to
JS12-10
(98.73 %) and
DHOB07
(98.02 %). DNA-DNA hybridization data indicated that strain L4-6
represented a novel genomic species belonging to the genus
. The polyphasic taxonomic characteristics indicated that the strain L4-6
represents a novel species of the genus
, for which the name
sp. nov. (type strain L4-6
=CGMCC 1.16273
=KCTC 62035
) is proposed.</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>China</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Nicotiana - microbiology</subject><subject>Nucleic Acid Hybridization</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Ubiquinone - chemistry</subject><subject>Xanthomonadaceae - classification</subject><subject>Xanthomonadaceae - isolation & purification</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9UMtOwzAQtBCIlsKVI_KRAwlrO3biIypPqYILnKON40iukjrECVL_HpeWnna0OzPaGUKuGaQMtL5362C7FFIAwURxQuYsUyqRILLTI-ZqRi5CWAPEBcA5mQnICs1FPifV49a2LdIRKzQu-NbR0Kd043_SO4o0Lkc7uKmjuxuOtqbN4DuKG4oDVq2lwbuWBuz6iH1D353xo8PNwTEKV5fkrME22KvDXJCv56fP5Wuy-nh5Wz6sEiOEHBPNbKERQOfxSVFXRnNuJCqwkGtZIZN5TKW0FazhXDXK1FigZZxlDKVtxILc7n37wX9PNoxl54LZpdtYP4WSM6FlwaWSkZruqWbwIQy2KfvBdThsSwblrtfyr9cSyn2vUXBz8J6qztZH-n-R4hfMH3M7</recordid><startdate>20191101</startdate><enddate>20191101</enddate><creator>Li, Qing-Qing</creator><creator>Chen, Xing</creator><creator>Zhou, Xing-Kui</creator><creator>Dong, Li-Min</creator><creator>Xiao, Min</creator><creator>Fang, Bao-Zhu</creator><creator>Li, Wen-Jun</creator><creator>Duan, Yan-Qing</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20191101</creationdate><title>Dyella tabacisoli sp. nov., a bacterium isolated from an arable soil sample of Nicotiana tabacum L</title><author>Li, Qing-Qing ; Chen, Xing ; Zhou, Xing-Kui ; Dong, Li-Min ; Xiao, Min ; Fang, Bao-Zhu ; Li, Wen-Jun ; Duan, Yan-Qing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-91e89a00974603dbc922c5a60e0795ba15703469e31f226f6cda8ae12141a5ef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>China</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Nicotiana - microbiology</topic><topic>Nucleic Acid Hybridization</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Ubiquinone - chemistry</topic><topic>Xanthomonadaceae - classification</topic><topic>Xanthomonadaceae - isolation & purification</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Qing-Qing</creatorcontrib><creatorcontrib>Chen, Xing</creatorcontrib><creatorcontrib>Zhou, Xing-Kui</creatorcontrib><creatorcontrib>Dong, Li-Min</creatorcontrib><creatorcontrib>Xiao, Min</creatorcontrib><creatorcontrib>Fang, Bao-Zhu</creatorcontrib><creatorcontrib>Li, Wen-Jun</creatorcontrib><creatorcontrib>Duan, Yan-Qing</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Qing-Qing</au><au>Chen, Xing</au><au>Zhou, Xing-Kui</au><au>Dong, Li-Min</au><au>Xiao, Min</au><au>Fang, Bao-Zhu</au><au>Li, Wen-Jun</au><au>Duan, Yan-Qing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Dyella tabacisoli sp. nov., a bacterium isolated from an arable soil sample of Nicotiana tabacum L</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2019-11-01</date><risdate>2019</risdate><volume>69</volume><issue>11</issue><spage>3338</spage><epage>3343</epage><pages>3338-3343</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, designated strain L4-6
, was isolated from an arable soil sample of tobacco in Huize, south-western China and subjected to polyphasic taxonomic characterization. The cells showed oxidase-positive and catalase-positive reactions. Growth occurred at 20-35 °C, at pH 5.0-8.0 and with 0-2 % (w/v) NaCl, optimally at 30 °C, pH 6.0-7.0 and 0-1 % (w/v) NaCl. The major respiratory lipoquinone was ubiquinone-8. The predominant cellular fatty acids (>10.0 %) were identified as summed feature 9 (iso-C
ω9
or C
10-methyl), iso-C
and iso-C
. The polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unidentified phospholipids, two unidentified aminophospholipids and five unidentified aminolipids. The genomic DNA G+C content was 60.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain L4-6
should be affiliated to the genus
and formed a clade with the most closely related organism
JS12-10
. 16S rRNA gene sequences similarity analysis showed that strain L4-6
was mostly closely related to
JS12-10
(98.73 %) and
DHOB07
(98.02 %). DNA-DNA hybridization data indicated that strain L4-6
represented a novel genomic species belonging to the genus
. The polyphasic taxonomic characteristics indicated that the strain L4-6
represents a novel species of the genus
, for which the name
sp. nov. (type strain L4-6
=CGMCC 1.16273
=KCTC 62035
) is proposed.</abstract><cop>England</cop><pmid>30489237</pmid><doi>10.1099/ijsem.0.003138</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| language | eng |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition China DNA, Bacterial - genetics Fatty Acids - chemistry Nicotiana - microbiology Nucleic Acid Hybridization Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Ubiquinone - chemistry Xanthomonadaceae - classification Xanthomonadaceae - isolation & purification |
| title | Dyella tabacisoli sp. nov., a bacterium isolated from an arable soil sample of Nicotiana tabacum L |
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