The maximum entropy production requirement for proton transfers enhances catalytic efficiency for β-lactamases

Movement of charges during enzyme catalytic cycle may be due to conformational changes, or to fast electron or proton transfer, or to both events. In each case, entropy production can be calculated using Terrel L. Hill's method, if relevant microscopic rate constants are known. When ranked by t...

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Veröffentlicht in:Biophysical chemistry 2019-01, Vol.244, p.11-21
Hauptverfasser: Juretić, Davor, Bonačić Lošić, Željana, Kuić, Domagoj, Simunić, Juraj, Dobovišek, Andrej
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container_end_page 21
container_issue
container_start_page 11
container_title Biophysical chemistry
container_volume 244
creator Juretić, Davor
Bonačić Lošić, Željana
Kuić, Domagoj
Simunić, Juraj
Dobovišek, Andrej
description Movement of charges during enzyme catalytic cycle may be due to conformational changes, or to fast electron or proton transfer, or to both events. In each case, entropy production can be calculated using Terrel L. Hill's method, if relevant microscopic rate constants are known. When ranked by their evolutionary distance from putative common ancestor, three β-lactamases considered in this study show correspondingly increased catalytic constant, catalytic efficiency, and overall entropy production. The acylation and deacylation steps with concomitant proton shuttles are the most important contributors to overall entropy production. The maximal entropy production requirement for the ES↔EP or EP↔E + P step leads to optimal rate constants, performance parameters, and entropy production values, which are close to those extracted from experiments and also rank in accordance with evolutionary distances. Concurrent maximization of entropy productions for both proton transfer steps revealed that evolvability potential of different β-lactamases is similarly high. These results may have implications in particular for latent potential of β-lactamases to evolve further and in general for selection of optimized enzymes through natural or directed evolution. [Display omitted] •Catalytic efficiency and entropy production increases for more evolved lactamases.•Proton transfer steps contribute most to overall entropy production.•Maximal entropy production requirement can augment performance parameters.•Natural upper limits are similar for dissipation-driven efficiency of β-lactamases.
doi_str_mv 10.1016/j.bpc.2018.10.004
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These results may have implications in particular for latent potential of β-lactamases to evolve further and in general for selection of optimized enzymes through natural or directed evolution. 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These results may have implications in particular for latent potential of β-lactamases to evolve further and in general for selection of optimized enzymes through natural or directed evolution. 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subjects beta-Lactamases - genetics
Catalysis
Catalytic efficiency
Directed Molecular Evolution
Entropy
Entropy production
Enzyme evolution
Evolution, Molecular
Kinetics
Optimal rate constants
Proton transfer steps
Protons
β-lactamases
title The maximum entropy production requirement for proton transfers enhances catalytic efficiency for β-lactamases
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