De novo gene mutations in normal human memory B cells
In the past years, the genomes of thousands of tumors have been elucidated. To date however, our knowledge on somatic gene alterations in normal cells is very limited. In this study, we demonstrate that tetanus-specific human memory B lymphocytes carry a substantial number of somatic mutations in th...
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creator | Slot, L. M. Wormhoudt, T. A. M. Kwakkenbos, M. J. Wagner, K. Ballering, A. Jongejan, A. van Kampen, A. C. M. Guikema, J. E. J. Bende, R. J. van Noesel, C. J. M. |
description | In the past years, the genomes of thousands of tumors have been elucidated. To date however, our knowledge on somatic gene alterations in normal cells is very limited. In this study, we demonstrate that tetanus-specific human memory B lymphocytes carry a substantial number of somatic mutations in the coding regions of the genome. Interestingly, we observed a statistically significant correlation between the number of exome mutations and those present in the immunoglobulin heavy variable regions. Our findings indicate that the majority of these genomic mutations arise in an antigen-dependent fashion, most likely during clonal expansion in germinal centers. The knowledge that normal B cells accumulate genomic alterations outside the immunoglobulin loci during development is relevant for our understanding of the process of lymphomagenesis. |
doi_str_mv | 10.1038/s41375-018-0289-4 |
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M. ; Wormhoudt, T. A. M. ; Kwakkenbos, M. J. ; Wagner, K. ; Ballering, A. ; Jongejan, A. ; van Kampen, A. C. M. ; Guikema, J. E. J. ; Bende, R. J. ; van Noesel, C. J. M.</creator><creatorcontrib>Slot, L. M. ; Wormhoudt, T. A. M. ; Kwakkenbos, M. J. ; Wagner, K. ; Ballering, A. ; Jongejan, A. ; van Kampen, A. C. M. ; Guikema, J. E. J. ; Bende, R. J. ; van Noesel, C. J. M.</creatorcontrib><description>In the past years, the genomes of thousands of tumors have been elucidated. To date however, our knowledge on somatic gene alterations in normal cells is very limited. In this study, we demonstrate that tetanus-specific human memory B lymphocytes carry a substantial number of somatic mutations in the coding regions of the genome. Interestingly, we observed a statistically significant correlation between the number of exome mutations and those present in the immunoglobulin heavy variable regions. Our findings indicate that the majority of these genomic mutations arise in an antigen-dependent fashion, most likely during clonal expansion in germinal centers. The knowledge that normal B cells accumulate genomic alterations outside the immunoglobulin loci during development is relevant for our understanding of the process of lymphomagenesis.</description><identifier>ISSN: 0887-6924</identifier><identifier>EISSN: 1476-5551</identifier><identifier>DOI: 10.1038/s41375-018-0289-4</identifier><identifier>PMID: 30353030</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>13/31 ; 38/77 ; 45/22 ; 45/23 ; 631/250/1619/40 ; 631/67/1990/291/1621/1915 ; 631/67/69 ; 82 ; 82/1 ; 82/103 ; 96/109 ; Analysis ; Antigens ; B cells ; B-Lymphocytes - immunology ; B-Lymphocytes - metabolism ; Cancer Research ; Care and treatment ; Clonal Selection, Antigen-Mediated ; Cloning ; Critical Care Medicine ; EDTA ; Gene mutation ; Genes ; Genetic aspects ; Genomes ; Genomics ; Germinal centers ; Hematology ; Humans ; Immunoglobulin Heavy Chains - genetics ; Immunoglobulins ; Immunologic Memory ; Immunological memory ; Intensive ; Internal Medicine ; Lymphocytes ; Lymphocytes B ; Medicine ; Medicine & Public Health ; Memory ; Memory cells ; Mutation ; Oncology ; Somatic cells ; Statistical analysis ; Tetanus ; Tetanus - immunology ; Tetanus toxoid ; Tumors ; Whole Exome Sequencing</subject><ispartof>Leukemia, 2019-05, Vol.33 (5), p.1219-1230</ispartof><rights>Springer Nature Limited 2018</rights><rights>COPYRIGHT 2019 Nature Publishing Group</rights><rights>Copyright Nature Publishing Group May 2019</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c470t-4952a80660604cad87606addb7549673bc99dd41c97721a3e122d7796f08b25c3</citedby><cites>FETCH-LOGICAL-c470t-4952a80660604cad87606addb7549673bc99dd41c97721a3e122d7796f08b25c3</cites><orcidid>0000-0003-1025-7232 ; 0000-0001-6894-3441 ; 0000-0002-5173-3138 ; 0000-0002-8948-2549</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/s41375-018-0289-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1038/s41375-018-0289-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30353030$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Slot, L. M.</creatorcontrib><creatorcontrib>Wormhoudt, T. A. M.</creatorcontrib><creatorcontrib>Kwakkenbos, M. J.</creatorcontrib><creatorcontrib>Wagner, K.</creatorcontrib><creatorcontrib>Ballering, A.</creatorcontrib><creatorcontrib>Jongejan, A.</creatorcontrib><creatorcontrib>van Kampen, A. C. M.</creatorcontrib><creatorcontrib>Guikema, J. E. J.</creatorcontrib><creatorcontrib>Bende, R. J.</creatorcontrib><creatorcontrib>van Noesel, C. J. M.</creatorcontrib><title>De novo gene mutations in normal human memory B cells</title><title>Leukemia</title><addtitle>Leukemia</addtitle><addtitle>Leukemia</addtitle><description>In the past years, the genomes of thousands of tumors have been elucidated. To date however, our knowledge on somatic gene alterations in normal cells is very limited. In this study, we demonstrate that tetanus-specific human memory B lymphocytes carry a substantial number of somatic mutations in the coding regions of the genome. Interestingly, we observed a statistically significant correlation between the number of exome mutations and those present in the immunoglobulin heavy variable regions. Our findings indicate that the majority of these genomic mutations arise in an antigen-dependent fashion, most likely during clonal expansion in germinal centers. The knowledge that normal B cells accumulate genomic alterations outside the immunoglobulin loci during development is relevant for our understanding of the process of lymphomagenesis.</description><subject>13/31</subject><subject>38/77</subject><subject>45/22</subject><subject>45/23</subject><subject>631/250/1619/40</subject><subject>631/67/1990/291/1621/1915</subject><subject>631/67/69</subject><subject>82</subject><subject>82/1</subject><subject>82/103</subject><subject>96/109</subject><subject>Analysis</subject><subject>Antigens</subject><subject>B cells</subject><subject>B-Lymphocytes - immunology</subject><subject>B-Lymphocytes - metabolism</subject><subject>Cancer Research</subject><subject>Care and treatment</subject><subject>Clonal Selection, Antigen-Mediated</subject><subject>Cloning</subject><subject>Critical Care Medicine</subject><subject>EDTA</subject><subject>Gene mutation</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Germinal centers</subject><subject>Hematology</subject><subject>Humans</subject><subject>Immunoglobulin Heavy Chains - genetics</subject><subject>Immunoglobulins</subject><subject>Immunologic Memory</subject><subject>Immunological memory</subject><subject>Intensive</subject><subject>Internal Medicine</subject><subject>Lymphocytes</subject><subject>Lymphocytes B</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Memory</subject><subject>Memory cells</subject><subject>Mutation</subject><subject>Oncology</subject><subject>Somatic cells</subject><subject>Statistical analysis</subject><subject>Tetanus</subject><subject>Tetanus - immunology</subject><subject>Tetanus toxoid</subject><subject>Tumors</subject><subject>Whole Exome Sequencing</subject><issn>0887-6924</issn><issn>1476-5551</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kV1LHTEQhkOp1FPbH9AbWSiIN2sn2Xxe2qO1guBNex1ystlzVjaJJruC_77ZHr9RQsgw87zDTF6EvmE4wtDIH5niRrAasKyBSFXTD2iBqeA1Ywx_RAuQUtRcEbqLPud8BTAX-Se020DDyoUFYieuCvE2VmsXXOWn0Yx9DLnqQ0knb4ZqM3kTKu98THfVz8q6Ychf0E5nhuy-3r976O-v0z_L3_XF5dn58viitlTAWFPFiJHAOXCg1rRSlMi07UowqrhoVlaptqXYKiEINo3DhLRCKN6BXBFmmz10uO17neLN5PKofZ_nCUxwccqaYMIajKkSBf3-Cr2KUwplOk0IlkRwLJ9RazM43YcujsnYuak-ZpISACagUEdvUOW0zvc2Btf1Jf9CcPBMsHFmGDc5DtP_v3wJ4i1oU8w5uU5fp96bdKcx6NlTvfVUF0_17KmmRbN_v9m08q59VDyYWACyBXIphbVLT6u_3_UfblumFA</recordid><startdate>20190501</startdate><enddate>20190501</enddate><creator>Slot, L. 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M. ; Wormhoudt, T. A. M. ; Kwakkenbos, M. J. ; Wagner, K. ; Ballering, A. ; Jongejan, A. ; van Kampen, A. C. M. ; Guikema, J. E. J. ; Bende, R. J. ; van Noesel, C. J. 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M.</au><au>Wormhoudt, T. A. M.</au><au>Kwakkenbos, M. J.</au><au>Wagner, K.</au><au>Ballering, A.</au><au>Jongejan, A.</au><au>van Kampen, A. C. M.</au><au>Guikema, J. E. J.</au><au>Bende, R. J.</au><au>van Noesel, C. J. M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>De novo gene mutations in normal human memory B cells</atitle><jtitle>Leukemia</jtitle><stitle>Leukemia</stitle><addtitle>Leukemia</addtitle><date>2019-05-01</date><risdate>2019</risdate><volume>33</volume><issue>5</issue><spage>1219</spage><epage>1230</epage><pages>1219-1230</pages><issn>0887-6924</issn><eissn>1476-5551</eissn><abstract>In the past years, the genomes of thousands of tumors have been elucidated. To date however, our knowledge on somatic gene alterations in normal cells is very limited. In this study, we demonstrate that tetanus-specific human memory B lymphocytes carry a substantial number of somatic mutations in the coding regions of the genome. Interestingly, we observed a statistically significant correlation between the number of exome mutations and those present in the immunoglobulin heavy variable regions. Our findings indicate that the majority of these genomic mutations arise in an antigen-dependent fashion, most likely during clonal expansion in germinal centers. The knowledge that normal B cells accumulate genomic alterations outside the immunoglobulin loci during development is relevant for our understanding of the process of lymphomagenesis.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>30353030</pmid><doi>10.1038/s41375-018-0289-4</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-1025-7232</orcidid><orcidid>https://orcid.org/0000-0001-6894-3441</orcidid><orcidid>https://orcid.org/0000-0002-5173-3138</orcidid><orcidid>https://orcid.org/0000-0002-8948-2549</orcidid></addata></record> |
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subjects | 13/31 38/77 45/22 45/23 631/250/1619/40 631/67/1990/291/1621/1915 631/67/69 82 82/1 82/103 96/109 Analysis Antigens B cells B-Lymphocytes - immunology B-Lymphocytes - metabolism Cancer Research Care and treatment Clonal Selection, Antigen-Mediated Cloning Critical Care Medicine EDTA Gene mutation Genes Genetic aspects Genomes Genomics Germinal centers Hematology Humans Immunoglobulin Heavy Chains - genetics Immunoglobulins Immunologic Memory Immunological memory Intensive Internal Medicine Lymphocytes Lymphocytes B Medicine Medicine & Public Health Memory Memory cells Mutation Oncology Somatic cells Statistical analysis Tetanus Tetanus - immunology Tetanus toxoid Tumors Whole Exome Sequencing |
title | De novo gene mutations in normal human memory B cells |
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