Whole-exome sequencing for the genetic diagnosis of congenital red blood cell membrane disorders in Taiwan

Purpose: Congenital hemolytic anemia caused by red blood cell (RBC) membrane defects is a heterogeneous group of disorders. The present study aimed to search the causative gene mutations in patients with RBC membrane disorders in Taiwan. Materials and Methods: Next-generation sequencing approach usi...

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Veröffentlicht in:Clinica chimica acta 2018-12, Vol.487, p.311-317
Hauptverfasser: Lin, Pei-Chin, Chiou, Shyh-Shin, Lin, Chien-Yu, Wang, Shu-Chen, Huang, Hsi-Yuan, Chang, Ya-Sian, Tseng, Yu-Hsin, Kan, Tzu-Min, Liao, Yu-Mei, Tsai, Shih-Pien, Peng, Ching-Tien, Chang, Jan-Gowth
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container_title Clinica chimica acta
container_volume 487
creator Lin, Pei-Chin
Chiou, Shyh-Shin
Lin, Chien-Yu
Wang, Shu-Chen
Huang, Hsi-Yuan
Chang, Ya-Sian
Tseng, Yu-Hsin
Kan, Tzu-Min
Liao, Yu-Mei
Tsai, Shih-Pien
Peng, Ching-Tien
Chang, Jan-Gowth
description Purpose: Congenital hemolytic anemia caused by red blood cell (RBC) membrane defects is a heterogeneous group of disorders. The present study aimed to search the causative gene mutations in patients with RBC membrane disorders in Taiwan. Materials and Methods: Next-generation sequencing approach using whole-exome sequencing (WES) was performed. Sanger sequencing was performed for confirmation of variants detected in WES in patients and their family members. Results: Five causative variants, including two ANK1, two SPTA and one SPTB variants, were detected in four patients. All these variants, except one SPTA1 variant c.83G > A (p.R28H), are novel variants. Their pedigree analysis showed one de novo SPTA1 mutation c.83G > A (p.R28H) combined with αLELY, one de novo ANK1 mutation c.1034C > A (p.A345E), one autosomal dominant combined SPTA1 c.4604A > C (p.Q1535P) and SPTB c.6203 T > C (p.L2068P) mutations and one autosomal dominant ANK1 c.4462C > T (p.R1488X) mutation. Conclusions: Our data demonstrated that WES is an efficient tool for determining genetic etiologies of RBC membrane disorders and can facilitate accurate diagnosis and genetic counseling. Additional studies should be conducted on larger cohorts to investigate the distribution of gene mutations in patients with RBC membrane disorders in Taiwan. •RBC membrane disorders are highly heterogeneous in genetic background.•Genetic diagnosis of RBC membrane disorders is laborious using traditional sequencing.•Next-generation sequencing is effective in searching for causative variants.
doi_str_mv 10.1016/j.cca.2018.10.020
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The present study aimed to search the causative gene mutations in patients with RBC membrane disorders in Taiwan. Materials and Methods: Next-generation sequencing approach using whole-exome sequencing (WES) was performed. Sanger sequencing was performed for confirmation of variants detected in WES in patients and their family members. Results: Five causative variants, including two ANK1, two SPTA and one SPTB variants, were detected in four patients. All these variants, except one SPTA1 variant c.83G &gt; A (p.R28H), are novel variants. Their pedigree analysis showed one de novo SPTA1 mutation c.83G &gt; A (p.R28H) combined with αLELY, one de novo ANK1 mutation c.1034C &gt; A (p.A345E), one autosomal dominant combined SPTA1 c.4604A &gt; C (p.Q1535P) and SPTB c.6203 T &gt; C (p.L2068P) mutations and one autosomal dominant ANK1 c.4462C &gt; T (p.R1488X) mutation. Conclusions: Our data demonstrated that WES is an efficient tool for determining genetic etiologies of RBC membrane disorders and can facilitate accurate diagnosis and genetic counseling. Additional studies should be conducted on larger cohorts to investigate the distribution of gene mutations in patients with RBC membrane disorders in Taiwan. •RBC membrane disorders are highly heterogeneous in genetic background.•Genetic diagnosis of RBC membrane disorders is laborious using traditional sequencing.•Next-generation sequencing is effective in searching for causative variants.</description><identifier>ISSN: 0009-8981</identifier><identifier>EISSN: 1873-3492</identifier><identifier>DOI: 10.1016/j.cca.2018.10.020</identifier><identifier>PMID: 30317022</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Congenital red cell membrane disorder ; Elliptocytosis, Hereditary - diagnosis ; Elliptocytosis, Hereditary - genetics ; Erythrocyte Membrane - genetics ; Erythrocyte Membrane - metabolism ; Erythrocytes - metabolism ; Erythrocytes - pathology ; Exome ; Hereditary elliptocytosis ; Hereditary spherocytosis ; Humans ; Mutation ; Next-generation sequencing ; Spherocytosis, Hereditary - diagnosis ; Spherocytosis, Hereditary - genetics ; Taiwan ; Whole-exome sequencing</subject><ispartof>Clinica chimica acta, 2018-12, Vol.487, p.311-317</ispartof><rights>2018 Elsevier B.V.</rights><rights>Copyright © 2018 Elsevier B.V. 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The present study aimed to search the causative gene mutations in patients with RBC membrane disorders in Taiwan. Materials and Methods: Next-generation sequencing approach using whole-exome sequencing (WES) was performed. Sanger sequencing was performed for confirmation of variants detected in WES in patients and their family members. Results: Five causative variants, including two ANK1, two SPTA and one SPTB variants, were detected in four patients. All these variants, except one SPTA1 variant c.83G &gt; A (p.R28H), are novel variants. Their pedigree analysis showed one de novo SPTA1 mutation c.83G &gt; A (p.R28H) combined with αLELY, one de novo ANK1 mutation c.1034C &gt; A (p.A345E), one autosomal dominant combined SPTA1 c.4604A &gt; C (p.Q1535P) and SPTB c.6203 T &gt; C (p.L2068P) mutations and one autosomal dominant ANK1 c.4462C &gt; T (p.R1488X) mutation. Conclusions: Our data demonstrated that WES is an efficient tool for determining genetic etiologies of RBC membrane disorders and can facilitate accurate diagnosis and genetic counseling. Additional studies should be conducted on larger cohorts to investigate the distribution of gene mutations in patients with RBC membrane disorders in Taiwan. •RBC membrane disorders are highly heterogeneous in genetic background.•Genetic diagnosis of RBC membrane disorders is laborious using traditional sequencing.•Next-generation sequencing is effective in searching for causative variants.</description><subject>Congenital red cell membrane disorder</subject><subject>Elliptocytosis, Hereditary - diagnosis</subject><subject>Elliptocytosis, Hereditary - genetics</subject><subject>Erythrocyte Membrane - genetics</subject><subject>Erythrocyte Membrane - metabolism</subject><subject>Erythrocytes - metabolism</subject><subject>Erythrocytes - pathology</subject><subject>Exome</subject><subject>Hereditary elliptocytosis</subject><subject>Hereditary spherocytosis</subject><subject>Humans</subject><subject>Mutation</subject><subject>Next-generation sequencing</subject><subject>Spherocytosis, Hereditary - diagnosis</subject><subject>Spherocytosis, Hereditary - genetics</subject><subject>Taiwan</subject><subject>Whole-exome sequencing</subject><issn>0009-8981</issn><issn>1873-3492</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kMtOwzAQRS0EoqXwAWyQl2wSPImbh1ihipdUiU0RS8t2Jq2jJC52yuPvcdTCkpU14zNXM4eQS2AxMMhumlhrGScMilDHLGFHZApFnkYpL5NjMmWMlVFRFjAhZ943oeQsg1MySVkKOUuSKWneNrbFCL9sh9Tj-w57bfo1ra2jwwbpGnscjKaVkeveeuOpram2feibQbbUYUVVa21FNbYt7bBTTvYYeG9dhc5T09OVNJ-yPycntWw9XhzeGXl9uF8tnqLly-Pz4m4ZaQ7lEKUZn5ey1korrpBhLSGXOkVe5EkpC4QC56AU51BlIHXGw9-8xiwrVM5ByXRGrve5W2fDPX4QnfHjdmEvu_MigWCsTBnPAwp7VDvrvcNabJ3ppPsWwMSoWDQiKBaj4rEVFIeZq0P8TnVY_U38Og3A7R7AcOSHQSe8NkErVsahHkRlzT_xP1lFjYg</recordid><startdate>201812</startdate><enddate>201812</enddate><creator>Lin, Pei-Chin</creator><creator>Chiou, Shyh-Shin</creator><creator>Lin, Chien-Yu</creator><creator>Wang, Shu-Chen</creator><creator>Huang, Hsi-Yuan</creator><creator>Chang, Ya-Sian</creator><creator>Tseng, Yu-Hsin</creator><creator>Kan, Tzu-Min</creator><creator>Liao, Yu-Mei</creator><creator>Tsai, Shih-Pien</creator><creator>Peng, Ching-Tien</creator><creator>Chang, Jan-Gowth</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-0375-1427</orcidid></search><sort><creationdate>201812</creationdate><title>Whole-exome sequencing for the genetic diagnosis of congenital red blood cell membrane disorders in Taiwan</title><author>Lin, Pei-Chin ; Chiou, Shyh-Shin ; Lin, Chien-Yu ; Wang, Shu-Chen ; Huang, Hsi-Yuan ; Chang, Ya-Sian ; Tseng, Yu-Hsin ; Kan, Tzu-Min ; Liao, Yu-Mei ; Tsai, Shih-Pien ; Peng, Ching-Tien ; Chang, Jan-Gowth</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c419t-36459afcbcb4be0efa17ac3e48729a8e18e51bb441d61ac64c3e5fe668b741ba3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Congenital red cell membrane disorder</topic><topic>Elliptocytosis, Hereditary - diagnosis</topic><topic>Elliptocytosis, Hereditary - genetics</topic><topic>Erythrocyte Membrane - genetics</topic><topic>Erythrocyte Membrane - metabolism</topic><topic>Erythrocytes - metabolism</topic><topic>Erythrocytes - pathology</topic><topic>Exome</topic><topic>Hereditary elliptocytosis</topic><topic>Hereditary spherocytosis</topic><topic>Humans</topic><topic>Mutation</topic><topic>Next-generation sequencing</topic><topic>Spherocytosis, Hereditary - diagnosis</topic><topic>Spherocytosis, Hereditary - genetics</topic><topic>Taiwan</topic><topic>Whole-exome sequencing</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lin, Pei-Chin</creatorcontrib><creatorcontrib>Chiou, Shyh-Shin</creatorcontrib><creatorcontrib>Lin, Chien-Yu</creatorcontrib><creatorcontrib>Wang, Shu-Chen</creatorcontrib><creatorcontrib>Huang, Hsi-Yuan</creatorcontrib><creatorcontrib>Chang, Ya-Sian</creatorcontrib><creatorcontrib>Tseng, Yu-Hsin</creatorcontrib><creatorcontrib>Kan, Tzu-Min</creatorcontrib><creatorcontrib>Liao, Yu-Mei</creatorcontrib><creatorcontrib>Tsai, Shih-Pien</creatorcontrib><creatorcontrib>Peng, Ching-Tien</creatorcontrib><creatorcontrib>Chang, Jan-Gowth</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Clinica chimica acta</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lin, Pei-Chin</au><au>Chiou, Shyh-Shin</au><au>Lin, Chien-Yu</au><au>Wang, Shu-Chen</au><au>Huang, Hsi-Yuan</au><au>Chang, Ya-Sian</au><au>Tseng, Yu-Hsin</au><au>Kan, Tzu-Min</au><au>Liao, Yu-Mei</au><au>Tsai, Shih-Pien</au><au>Peng, Ching-Tien</au><au>Chang, Jan-Gowth</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Whole-exome sequencing for the genetic diagnosis of congenital red blood cell membrane disorders in Taiwan</atitle><jtitle>Clinica chimica acta</jtitle><addtitle>Clin Chim Acta</addtitle><date>2018-12</date><risdate>2018</risdate><volume>487</volume><spage>311</spage><epage>317</epage><pages>311-317</pages><issn>0009-8981</issn><eissn>1873-3492</eissn><abstract>Purpose: Congenital hemolytic anemia caused by red blood cell (RBC) membrane defects is a heterogeneous group of disorders. The present study aimed to search the causative gene mutations in patients with RBC membrane disorders in Taiwan. Materials and Methods: Next-generation sequencing approach using whole-exome sequencing (WES) was performed. Sanger sequencing was performed for confirmation of variants detected in WES in patients and their family members. Results: Five causative variants, including two ANK1, two SPTA and one SPTB variants, were detected in four patients. All these variants, except one SPTA1 variant c.83G &gt; A (p.R28H), are novel variants. Their pedigree analysis showed one de novo SPTA1 mutation c.83G &gt; A (p.R28H) combined with αLELY, one de novo ANK1 mutation c.1034C &gt; A (p.A345E), one autosomal dominant combined SPTA1 c.4604A &gt; C (p.Q1535P) and SPTB c.6203 T &gt; C (p.L2068P) mutations and one autosomal dominant ANK1 c.4462C &gt; T (p.R1488X) mutation. Conclusions: Our data demonstrated that WES is an efficient tool for determining genetic etiologies of RBC membrane disorders and can facilitate accurate diagnosis and genetic counseling. Additional studies should be conducted on larger cohorts to investigate the distribution of gene mutations in patients with RBC membrane disorders in Taiwan. •RBC membrane disorders are highly heterogeneous in genetic background.•Genetic diagnosis of RBC membrane disorders is laborious using traditional sequencing.•Next-generation sequencing is effective in searching for causative variants.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>30317022</pmid><doi>10.1016/j.cca.2018.10.020</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0003-0375-1427</orcidid></addata></record>
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subjects Congenital red cell membrane disorder
Elliptocytosis, Hereditary - diagnosis
Elliptocytosis, Hereditary - genetics
Erythrocyte Membrane - genetics
Erythrocyte Membrane - metabolism
Erythrocytes - metabolism
Erythrocytes - pathology
Exome
Hereditary elliptocytosis
Hereditary spherocytosis
Humans
Mutation
Next-generation sequencing
Spherocytosis, Hereditary - diagnosis
Spherocytosis, Hereditary - genetics
Taiwan
Whole-exome sequencing
title Whole-exome sequencing for the genetic diagnosis of congenital red blood cell membrane disorders in Taiwan
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