Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway
In an effort to develop potent anti-inflammatory and antithrombotic drugs, a series of new 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs were designed and docked against homology models of human cyclooxygenase-2 (COX-2), lipoxygenase and thromboxane synthase enzymes built using MODELL...
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creator | Sekhar, P. Nataraj Reddy, L. Ananda De Maeyer, Marc Kumar, K. Praveen Srinivasulu, Y.S. Sunitha, M.S.L. Sphoorthi, I.S.N. Jayasree, G. Rao, A. Maruthi Kothekar, V.S. Narayana, P.V.B.S. Kishor, P.B. Kavi |
description | In an effort to develop potent anti-inflammatory and antithrombotic drugs, a series of new 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs were designed and docked against homology models of human cyclooxygenase-2 (COX-2), lipoxygenase and thromboxane synthase enzymes built using MODELLER 7v7 software and refined by molecular dynamics for 2
ns in a solvated layer. Validation of these homology models by procheck, verify-3D and ERRAT programs revealed that these models are highly reliable. Docking studies of 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs designed by substituting different chemical groups on benzene rings replacing 1H pyrazole in celecoxib with five membered thiophene, furan, 1H pyrrole, 1H imidazole, thiazole and 1,3-oxazole showed that diaryl furan molecules showed good binding affinity towards mouse COX-2. Further, docking studies of diaryl furan derivatives are likely to have superior thromboxane synthase and COX-2 selectivity. Docking studies against site directed mutagenesis of Arg120Ala, Ser530Ala, Ser530Met and Tyr355Phe enzymes displayed the effect of inhibition of COX-2. Drug likeliness and activity decay for these inhibitors showed that these molecules act as best drugs at very low concentrations. |
doi_str_mv | 10.1016/j.jmgm.2009.08.010 |
format | Article |
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ns in a solvated layer. Validation of these homology models by procheck, verify-3D and ERRAT programs revealed that these models are highly reliable. Docking studies of 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs designed by substituting different chemical groups on benzene rings replacing 1H pyrazole in celecoxib with five membered thiophene, furan, 1H pyrrole, 1H imidazole, thiazole and 1,3-oxazole showed that diaryl furan molecules showed good binding affinity towards mouse COX-2. Further, docking studies of diaryl furan derivatives are likely to have superior thromboxane synthase and COX-2 selectivity. Docking studies against site directed mutagenesis of Arg120Ala, Ser530Ala, Ser530Met and Tyr355Phe enzymes displayed the effect of inhibition of COX-2. Drug likeliness and activity decay for these inhibitors showed that these molecules act as best drugs at very low concentrations.</description><identifier>ISSN: 1093-3263</identifier><identifier>EISSN: 1873-4243</identifier><identifier>DOI: 10.1016/j.jmgm.2009.08.010</identifier><identifier>PMID: 19766029</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Amino Acid Sequence ; Catalytic Domain ; COX-2 ; Cyclooxygenase 1 - chemistry ; Cyclooxygenase 2 - chemistry ; Cyclooxygenase Inhibitors - chemistry ; Cyclooxygenase Inhibitors - pharmacology ; Cytochrome P-450 Enzyme Inhibitors ; Cytochrome P-450 Enzyme System - chemistry ; Docking ; Furans - chemistry ; Furans - pharmacology ; Genome, Human - genetics ; Homology modelling ; Humans ; Inflammation - enzymology ; Intramolecular Oxidoreductases - antagonists & inhibitors ; Intramolecular Oxidoreductases - chemistry ; Lipoxygenase ; Lipoxygenase - chemistry ; Lipoxygenase Inhibitors - chemistry ; Lipoxygenase Inhibitors - pharmacology ; Models, Molecular ; Molecular Dynamics Simulation ; Molecular Sequence Data ; Phylogeny ; Protein Structure, Secondary ; Reproducibility of Results ; Sequence Alignment ; Structural Homology, Protein ; Thromboxane synthase ; Thromboxane-A Synthase - antagonists & inhibitors ; Thromboxane-A Synthase - chemistry</subject><ispartof>Journal of molecular graphics & modelling, 2009-11, Vol.28 (4), p.313-329</ispartof><rights>2009 Elsevier Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c386t-22bada116c7b4764c51e3ea835d4e81e8c95b66d96e73d4049a39f9f9b66fd133</citedby><cites>FETCH-LOGICAL-c386t-22bada116c7b4764c51e3ea835d4e81e8c95b66d96e73d4049a39f9f9b66fd133</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1093326309001065$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19766029$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sekhar, P. Nataraj</creatorcontrib><creatorcontrib>Reddy, L. Ananda</creatorcontrib><creatorcontrib>De Maeyer, Marc</creatorcontrib><creatorcontrib>Kumar, K. Praveen</creatorcontrib><creatorcontrib>Srinivasulu, Y.S.</creatorcontrib><creatorcontrib>Sunitha, M.S.L.</creatorcontrib><creatorcontrib>Sphoorthi, I.S.N.</creatorcontrib><creatorcontrib>Jayasree, G.</creatorcontrib><creatorcontrib>Rao, A. Maruthi</creatorcontrib><creatorcontrib>Kothekar, V.S.</creatorcontrib><creatorcontrib>Narayana, P.V.B.S.</creatorcontrib><creatorcontrib>Kishor, P.B. Kavi</creatorcontrib><title>Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway</title><title>Journal of molecular graphics & modelling</title><addtitle>J Mol Graph Model</addtitle><description>In an effort to develop potent anti-inflammatory and antithrombotic drugs, a series of new 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs were designed and docked against homology models of human cyclooxygenase-2 (COX-2), lipoxygenase and thromboxane synthase enzymes built using MODELLER 7v7 software and refined by molecular dynamics for 2
ns in a solvated layer. Validation of these homology models by procheck, verify-3D and ERRAT programs revealed that these models are highly reliable. Docking studies of 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs designed by substituting different chemical groups on benzene rings replacing 1H pyrazole in celecoxib with five membered thiophene, furan, 1H pyrrole, 1H imidazole, thiazole and 1,3-oxazole showed that diaryl furan molecules showed good binding affinity towards mouse COX-2. Further, docking studies of diaryl furan derivatives are likely to have superior thromboxane synthase and COX-2 selectivity. Docking studies against site directed mutagenesis of Arg120Ala, Ser530Ala, Ser530Met and Tyr355Phe enzymes displayed the effect of inhibition of COX-2. Drug likeliness and activity decay for these inhibitors showed that these molecules act as best drugs at very low concentrations.</description><subject>Amino Acid Sequence</subject><subject>Catalytic Domain</subject><subject>COX-2</subject><subject>Cyclooxygenase 1 - chemistry</subject><subject>Cyclooxygenase 2 - chemistry</subject><subject>Cyclooxygenase Inhibitors - chemistry</subject><subject>Cyclooxygenase Inhibitors - pharmacology</subject><subject>Cytochrome P-450 Enzyme Inhibitors</subject><subject>Cytochrome P-450 Enzyme System - chemistry</subject><subject>Docking</subject><subject>Furans - chemistry</subject><subject>Furans - pharmacology</subject><subject>Genome, Human - genetics</subject><subject>Homology modelling</subject><subject>Humans</subject><subject>Inflammation - enzymology</subject><subject>Intramolecular Oxidoreductases - antagonists & inhibitors</subject><subject>Intramolecular Oxidoreductases - chemistry</subject><subject>Lipoxygenase</subject><subject>Lipoxygenase - chemistry</subject><subject>Lipoxygenase Inhibitors - chemistry</subject><subject>Lipoxygenase Inhibitors - pharmacology</subject><subject>Models, Molecular</subject><subject>Molecular Dynamics Simulation</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Protein Structure, Secondary</subject><subject>Reproducibility of Results</subject><subject>Sequence Alignment</subject><subject>Structural Homology, Protein</subject><subject>Thromboxane synthase</subject><subject>Thromboxane-A Synthase - antagonists & inhibitors</subject><subject>Thromboxane-A Synthase - chemistry</subject><issn>1093-3263</issn><issn>1873-4243</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9UU1v1DAQjRCIlsIf4IB84tQEf2SdROKCqlKQKnGBs-XYk10vsR1sJ9vwU_k1eLsrekO25PHMe88zfkXxluCKYMI_7Ku93dqKYtxVuK0wwc-KS9I2rKxpzZ7nGHesZJSzi-JVjHuMMWtx87K4IF3DOabdZfHnDpy3gA5GA5JOjms0MQcaKW8nGWQyCyDt1U_jtiimWRuIyA_IwQFpI8M6omEO0iENwSyP8MzfSuNiQrvZ5opa1ej9w7oFJyOU9BqNZvp3v0ZpF7zt_YN0gOLq0i5nH1uYgo9JHunGPVXA_V5tfsS4xY8L6BzkPYzSWpl8WNEk0-4g19fFi0GOEd6cz6vix-fb7zdfyvtvd19vPt2XirU8lZT2UktCuGr6uuG12hBgIFu20TW0BFrVbXrOdcehYbrGdSdZN-SVk4MmjF0V70-6ud1fM8QkrIkKxjHP4-coaNZuO04zkJ6AKs8VAwxiCsbmLxQEi6OjYi-OjoqjowK3IjuaSe_O6nNvQT9RzhZmwMcTAPKMi4EgojLgFGgTQCWhvfmf_l_jiLqB</recordid><startdate>20091101</startdate><enddate>20091101</enddate><creator>Sekhar, P. Nataraj</creator><creator>Reddy, L. Ananda</creator><creator>De Maeyer, Marc</creator><creator>Kumar, K. Praveen</creator><creator>Srinivasulu, Y.S.</creator><creator>Sunitha, M.S.L.</creator><creator>Sphoorthi, I.S.N.</creator><creator>Jayasree, G.</creator><creator>Rao, A. Maruthi</creator><creator>Kothekar, V.S.</creator><creator>Narayana, P.V.B.S.</creator><creator>Kishor, P.B. Kavi</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20091101</creationdate><title>Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway</title><author>Sekhar, P. Nataraj ; Reddy, L. Ananda ; De Maeyer, Marc ; Kumar, K. Praveen ; Srinivasulu, Y.S. ; Sunitha, M.S.L. ; Sphoorthi, I.S.N. ; Jayasree, G. ; Rao, A. Maruthi ; Kothekar, V.S. ; Narayana, P.V.B.S. ; Kishor, P.B. 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Kavi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway</atitle><jtitle>Journal of molecular graphics & modelling</jtitle><addtitle>J Mol Graph Model</addtitle><date>2009-11-01</date><risdate>2009</risdate><volume>28</volume><issue>4</issue><spage>313</spage><epage>329</epage><pages>313-329</pages><issn>1093-3263</issn><eissn>1873-4243</eissn><abstract>In an effort to develop potent anti-inflammatory and antithrombotic drugs, a series of new 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs were designed and docked against homology models of human cyclooxygenase-2 (COX-2), lipoxygenase and thromboxane synthase enzymes built using MODELLER 7v7 software and refined by molecular dynamics for 2
ns in a solvated layer. Validation of these homology models by procheck, verify-3D and ERRAT programs revealed that these models are highly reliable. Docking studies of 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs designed by substituting different chemical groups on benzene rings replacing 1H pyrazole in celecoxib with five membered thiophene, furan, 1H pyrrole, 1H imidazole, thiazole and 1,3-oxazole showed that diaryl furan molecules showed good binding affinity towards mouse COX-2. Further, docking studies of diaryl furan derivatives are likely to have superior thromboxane synthase and COX-2 selectivity. Docking studies against site directed mutagenesis of Arg120Ala, Ser530Ala, Ser530Met and Tyr355Phe enzymes displayed the effect of inhibition of COX-2. Drug likeliness and activity decay for these inhibitors showed that these molecules act as best drugs at very low concentrations.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>19766029</pmid><doi>10.1016/j.jmgm.2009.08.010</doi><tpages>17</tpages></addata></record> |
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subjects | Amino Acid Sequence Catalytic Domain COX-2 Cyclooxygenase 1 - chemistry Cyclooxygenase 2 - chemistry Cyclooxygenase Inhibitors - chemistry Cyclooxygenase Inhibitors - pharmacology Cytochrome P-450 Enzyme Inhibitors Cytochrome P-450 Enzyme System - chemistry Docking Furans - chemistry Furans - pharmacology Genome, Human - genetics Homology modelling Humans Inflammation - enzymology Intramolecular Oxidoreductases - antagonists & inhibitors Intramolecular Oxidoreductases - chemistry Lipoxygenase Lipoxygenase - chemistry Lipoxygenase Inhibitors - chemistry Lipoxygenase Inhibitors - pharmacology Models, Molecular Molecular Dynamics Simulation Molecular Sequence Data Phylogeny Protein Structure, Secondary Reproducibility of Results Sequence Alignment Structural Homology, Protein Thromboxane synthase Thromboxane-A Synthase - antagonists & inhibitors Thromboxane-A Synthase - chemistry |
title | Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway |
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