Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway

In an effort to develop potent anti-inflammatory and antithrombotic drugs, a series of new 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs were designed and docked against homology models of human cyclooxygenase-2 (COX-2), lipoxygenase and thromboxane synthase enzymes built using MODELL...

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Veröffentlicht in:Journal of molecular graphics & modelling 2009-11, Vol.28 (4), p.313-329
Hauptverfasser: Sekhar, P. Nataraj, Reddy, L. Ananda, De Maeyer, Marc, Kumar, K. Praveen, Srinivasulu, Y.S., Sunitha, M.S.L., Sphoorthi, I.S.N., Jayasree, G., Rao, A. Maruthi, Kothekar, V.S., Narayana, P.V.B.S., Kishor, P.B. Kavi
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container_end_page 329
container_issue 4
container_start_page 313
container_title Journal of molecular graphics & modelling
container_volume 28
creator Sekhar, P. Nataraj
Reddy, L. Ananda
De Maeyer, Marc
Kumar, K. Praveen
Srinivasulu, Y.S.
Sunitha, M.S.L.
Sphoorthi, I.S.N.
Jayasree, G.
Rao, A. Maruthi
Kothekar, V.S.
Narayana, P.V.B.S.
Kishor, P.B. Kavi
description In an effort to develop potent anti-inflammatory and antithrombotic drugs, a series of new 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs were designed and docked against homology models of human cyclooxygenase-2 (COX-2), lipoxygenase and thromboxane synthase enzymes built using MODELLER 7v7 software and refined by molecular dynamics for 2 ns in a solvated layer. Validation of these homology models by procheck, verify-3D and ERRAT programs revealed that these models are highly reliable. Docking studies of 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs designed by substituting different chemical groups on benzene rings replacing 1H pyrazole in celecoxib with five membered thiophene, furan, 1H pyrrole, 1H imidazole, thiazole and 1,3-oxazole showed that diaryl furan molecules showed good binding affinity towards mouse COX-2. Further, docking studies of diaryl furan derivatives are likely to have superior thromboxane synthase and COX-2 selectivity. Docking studies against site directed mutagenesis of Arg120Ala, Ser530Ala, Ser530Met and Tyr355Phe enzymes displayed the effect of inhibition of COX-2. Drug likeliness and activity decay for these inhibitors showed that these molecules act as best drugs at very low concentrations.
doi_str_mv 10.1016/j.jmgm.2009.08.010
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Kavi</creatorcontrib><title>Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway</title><title>Journal of molecular graphics &amp; modelling</title><addtitle>J Mol Graph Model</addtitle><description>In an effort to develop potent anti-inflammatory and antithrombotic drugs, a series of new 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs were designed and docked against homology models of human cyclooxygenase-2 (COX-2), lipoxygenase and thromboxane synthase enzymes built using MODELLER 7v7 software and refined by molecular dynamics for 2 ns in a solvated layer. Validation of these homology models by procheck, verify-3D and ERRAT programs revealed that these models are highly reliable. 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subjects Amino Acid Sequence
Catalytic Domain
COX-2
Cyclooxygenase 1 - chemistry
Cyclooxygenase 2 - chemistry
Cyclooxygenase Inhibitors - chemistry
Cyclooxygenase Inhibitors - pharmacology
Cytochrome P-450 Enzyme Inhibitors
Cytochrome P-450 Enzyme System - chemistry
Docking
Furans - chemistry
Furans - pharmacology
Genome, Human - genetics
Homology modelling
Humans
Inflammation - enzymology
Intramolecular Oxidoreductases - antagonists & inhibitors
Intramolecular Oxidoreductases - chemistry
Lipoxygenase
Lipoxygenase - chemistry
Lipoxygenase Inhibitors - chemistry
Lipoxygenase Inhibitors - pharmacology
Models, Molecular
Molecular Dynamics Simulation
Molecular Sequence Data
Phylogeny
Protein Structure, Secondary
Reproducibility of Results
Sequence Alignment
Structural Homology, Protein
Thromboxane synthase
Thromboxane-A Synthase - antagonists & inhibitors
Thromboxane-A Synthase - chemistry
title Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway
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