A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability

The application of array‐based comparative genomic hybridization and next‐generation sequencing has identified many chromosomal microdeletions and microduplications in patients with different pathological phenotypes. Different copy number variations are described within the short arm of chromosome 1...

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Veröffentlicht in:American journal of medical genetics. Part A 2018-11, Vol.176 (11), p.2395-2403
Hauptverfasser: Kashevarova, Anna A., Nazarenko, Lyudmila P., Skryabin, Nikolay A., Nikitina, Tatiana V., Vasilyev, Stanislav A., Tolmacheva, Ekaterina N., Lopatkina, Mariya E., Salyukova, Olga A., Chechetkina, Nataliya N., Vorotelyak, Ekaterina A., Kalabusheva, Ekaterina P., Fishman, Veniamin S., Kzhyshkowska, Julia, Graziano, Claudio, Magini, Pamela, Romeo, Giovanni, Lebedev, Igor N.
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container_end_page 2403
container_issue 11
container_start_page 2395
container_title American journal of medical genetics. Part A
container_volume 176
creator Kashevarova, Anna A.
Nazarenko, Lyudmila P.
Skryabin, Nikolay A.
Nikitina, Tatiana V.
Vasilyev, Stanislav A.
Tolmacheva, Ekaterina N.
Lopatkina, Mariya E.
Salyukova, Olga A.
Chechetkina, Nataliya N.
Vorotelyak, Ekaterina A.
Kalabusheva, Ekaterina P.
Fishman, Veniamin S.
Kzhyshkowska, Julia
Graziano, Claudio
Magini, Pamela
Romeo, Giovanni
Lebedev, Igor N.
description The application of array‐based comparative genomic hybridization and next‐generation sequencing has identified many chromosomal microdeletions and microduplications in patients with different pathological phenotypes. Different copy number variations are described within the short arm of chromosome 18 in patients with skin diseases. In particular, full or partial monosomy 18p has also been associated with keratosis pilaris. Here, for the first time, we report a young male patient with intellectual disability, diabetes mellitus (type I), and keratosis pilaris, who exhibited a de novo 45‐kb microduplication of exons 4–22 of LAMA1, located at 18p11.31, and a 432‐kb 18p11.32 microduplication of paternal origin containing the genes METTL4, NDC80, and CBX3P2 and exons 1–15 of the SMCHD1 gene. The microduplication of LAMA1 was identified in skin fibroblasts but not in lymphocytes, whereas the larger microduplication was present in both tissues. We propose LAMA1 as a novel candidate gene for keratosis pilaris. Although inherited from a healthy father, the 18p11.32 microduplication, which included relevant genes, could also contribute to phenotype manifestation.
doi_str_mv 10.1002/ajmg.a.40478
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Part A</title><addtitle>Am J Med Genet A</addtitle><description>The application of array‐based comparative genomic hybridization and next‐generation sequencing has identified many chromosomal microdeletions and microduplications in patients with different pathological phenotypes. Different copy number variations are described within the short arm of chromosome 18 in patients with skin diseases. In particular, full or partial monosomy 18p has also been associated with keratosis pilaris. Here, for the first time, we report a young male patient with intellectual disability, diabetes mellitus (type I), and keratosis pilaris, who exhibited a de novo 45‐kb microduplication of exons 4–22 of LAMA1, located at 18p11.31, and a 432‐kb 18p11.32 microduplication of paternal origin containing the genes METTL4, NDC80, and CBX3P2 and exons 1–15 of the SMCHD1 gene. 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Here, for the first time, we report a young male patient with intellectual disability, diabetes mellitus (type I), and keratosis pilaris, who exhibited a de novo 45‐kb microduplication of exons 4–22 of LAMA1, located at 18p11.31, and a 432‐kb 18p11.32 microduplication of paternal origin containing the genes METTL4, NDC80, and CBX3P2 and exons 1–15 of the SMCHD1 gene. The microduplication of LAMA1 was identified in skin fibroblasts but not in lymphocytes, whereas the larger microduplication was present in both tissues. We propose LAMA1 as a novel candidate gene for keratosis pilaris. Although inherited from a healthy father, the 18p11.32 microduplication, which included relevant genes, could also contribute to phenotype manifestation.</abstract><cop>Hoboken, USA</cop><pub>John Wiley &amp; Sons, Inc</pub><pmid>30244536</pmid><doi>10.1002/ajmg.a.40478</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-0716-4302</orcidid></addata></record>
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source Wiley Online Library Journals Frontfile Complete
subjects 18p11.32 microduplication
Chromosome 18
Copy number
developmental delay
Diabetes mellitus
EMILIN2
Exons
Fibroblasts
Genes
Hybridization
Intellectual disabilities
intellectual disability
Keratosis
keratosis pilaris
LAMA1
LPIN2
Lymphocytes
METTL4
Monosomy
mosaic CNVs
NDC80
Nose
Phenotypes
Skin diseases
SMCHD1
title A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability
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