A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability
The application of array‐based comparative genomic hybridization and next‐generation sequencing has identified many chromosomal microdeletions and microduplications in patients with different pathological phenotypes. Different copy number variations are described within the short arm of chromosome 1...
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Veröffentlicht in: | American journal of medical genetics. Part A 2018-11, Vol.176 (11), p.2395-2403 |
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creator | Kashevarova, Anna A. Nazarenko, Lyudmila P. Skryabin, Nikolay A. Nikitina, Tatiana V. Vasilyev, Stanislav A. Tolmacheva, Ekaterina N. Lopatkina, Mariya E. Salyukova, Olga A. Chechetkina, Nataliya N. Vorotelyak, Ekaterina A. Kalabusheva, Ekaterina P. Fishman, Veniamin S. Kzhyshkowska, Julia Graziano, Claudio Magini, Pamela Romeo, Giovanni Lebedev, Igor N. |
description | The application of array‐based comparative genomic hybridization and next‐generation sequencing has identified many chromosomal microdeletions and microduplications in patients with different pathological phenotypes. Different copy number variations are described within the short arm of chromosome 18 in patients with skin diseases. In particular, full or partial monosomy 18p has also been associated with keratosis pilaris. Here, for the first time, we report a young male patient with intellectual disability, diabetes mellitus (type I), and keratosis pilaris, who exhibited a de novo 45‐kb microduplication of exons 4–22 of LAMA1, located at 18p11.31, and a 432‐kb 18p11.32 microduplication of paternal origin containing the genes METTL4, NDC80, and CBX3P2 and exons 1–15 of the SMCHD1 gene. The microduplication of LAMA1 was identified in skin fibroblasts but not in lymphocytes, whereas the larger microduplication was present in both tissues. We propose LAMA1 as a novel candidate gene for keratosis pilaris. Although inherited from a healthy father, the 18p11.32 microduplication, which included relevant genes, could also contribute to phenotype manifestation. |
doi_str_mv | 10.1002/ajmg.a.40478 |
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Different copy number variations are described within the short arm of chromosome 18 in patients with skin diseases. In particular, full or partial monosomy 18p has also been associated with keratosis pilaris. Here, for the first time, we report a young male patient with intellectual disability, diabetes mellitus (type I), and keratosis pilaris, who exhibited a de novo 45‐kb microduplication of exons 4–22 of LAMA1, located at 18p11.31, and a 432‐kb 18p11.32 microduplication of paternal origin containing the genes METTL4, NDC80, and CBX3P2 and exons 1–15 of the SMCHD1 gene. The microduplication of LAMA1 was identified in skin fibroblasts but not in lymphocytes, whereas the larger microduplication was present in both tissues. We propose LAMA1 as a novel candidate gene for keratosis pilaris. Although inherited from a healthy father, the 18p11.32 microduplication, which included relevant genes, could also contribute to phenotype manifestation.</description><identifier>ISSN: 1552-4825</identifier><identifier>EISSN: 1552-4833</identifier><identifier>DOI: 10.1002/ajmg.a.40478</identifier><identifier>PMID: 30244536</identifier><language>eng</language><publisher>Hoboken, USA: John Wiley & Sons, Inc</publisher><subject>18p11.32 microduplication ; Chromosome 18 ; Copy number ; developmental delay ; Diabetes mellitus ; EMILIN2 ; Exons ; Fibroblasts ; Genes ; Hybridization ; Intellectual disabilities ; intellectual disability ; Keratosis ; keratosis pilaris ; LAMA1 ; LPIN2 ; Lymphocytes ; METTL4 ; Monosomy ; mosaic CNVs ; NDC80 ; Nose ; Phenotypes ; Skin diseases ; SMCHD1</subject><ispartof>American journal of medical genetics. 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Part A</title><addtitle>Am J Med Genet A</addtitle><description>The application of array‐based comparative genomic hybridization and next‐generation sequencing has identified many chromosomal microdeletions and microduplications in patients with different pathological phenotypes. Different copy number variations are described within the short arm of chromosome 18 in patients with skin diseases. In particular, full or partial monosomy 18p has also been associated with keratosis pilaris. Here, for the first time, we report a young male patient with intellectual disability, diabetes mellitus (type I), and keratosis pilaris, who exhibited a de novo 45‐kb microduplication of exons 4–22 of LAMA1, located at 18p11.31, and a 432‐kb 18p11.32 microduplication of paternal origin containing the genes METTL4, NDC80, and CBX3P2 and exons 1–15 of the SMCHD1 gene. The microduplication of LAMA1 was identified in skin fibroblasts but not in lymphocytes, whereas the larger microduplication was present in both tissues. We propose LAMA1 as a novel candidate gene for keratosis pilaris. Although inherited from a healthy father, the 18p11.32 microduplication, which included relevant genes, could also contribute to phenotype manifestation.</description><subject>18p11.32 microduplication</subject><subject>Chromosome 18</subject><subject>Copy number</subject><subject>developmental delay</subject><subject>Diabetes mellitus</subject><subject>EMILIN2</subject><subject>Exons</subject><subject>Fibroblasts</subject><subject>Genes</subject><subject>Hybridization</subject><subject>Intellectual disabilities</subject><subject>intellectual disability</subject><subject>Keratosis</subject><subject>keratosis pilaris</subject><subject>LAMA1</subject><subject>LPIN2</subject><subject>Lymphocytes</subject><subject>METTL4</subject><subject>Monosomy</subject><subject>mosaic CNVs</subject><subject>NDC80</subject><subject>Nose</subject><subject>Phenotypes</subject><subject>Skin diseases</subject><subject>SMCHD1</subject><issn>1552-4825</issn><issn>1552-4833</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp9kc1u1DAURi1UREvbHevKUjcsmMH_ySyjqhSqqdjA2rqxneIhiVPbUTXvwsPWYUoXILG6n-TjY-t-CL2jZE0JYR9hN9yvYS2IqOpX6IRKyVai5vzoJTN5jN6mtCOEE1mpN-iYEyaE5OoE_WrwEBJ4g_2YI9y7scTBmxjsPPXeQPZhxKHD2-auoRhGiwGbMKbs87ycQY9pPVG65uzfe34s9FSyGzN-9PkH_uki5JB8wpPvIZa5KMvbru-dyXPRWZ-g9b3P-zP0uoM-ufPneYq-f7r-dvV5tf168-Wq2a4MV6JeddTaDak2XLREcUF4pwwjXAhCZdVya8ASygSTXbuR0AJX1oEgHROWyU3F-Sl6f_BOMTzMLmU9-GTKj2B0YU6aUUorIWslCnr5F7oLcyxbWChJK0WoooX6cKDKPlKKrtNT9APEvaZEL63ppTUN-ndrBb94ls7t4OwL_KemAogD8Oh7t_-vTDe3dzfNwfsEEYukKw</recordid><startdate>201811</startdate><enddate>201811</enddate><creator>Kashevarova, Anna A.</creator><creator>Nazarenko, Lyudmila P.</creator><creator>Skryabin, Nikolay A.</creator><creator>Nikitina, Tatiana V.</creator><creator>Vasilyev, Stanislav A.</creator><creator>Tolmacheva, Ekaterina N.</creator><creator>Lopatkina, Mariya E.</creator><creator>Salyukova, Olga A.</creator><creator>Chechetkina, Nataliya N.</creator><creator>Vorotelyak, Ekaterina A.</creator><creator>Kalabusheva, Ekaterina P.</creator><creator>Fishman, Veniamin S.</creator><creator>Kzhyshkowska, Julia</creator><creator>Graziano, Claudio</creator><creator>Magini, Pamela</creator><creator>Romeo, Giovanni</creator><creator>Lebedev, Igor N.</creator><general>John Wiley & Sons, Inc</general><general>Wiley Subscription Services, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-0716-4302</orcidid></search><sort><creationdate>201811</creationdate><title>A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability</title><author>Kashevarova, Anna A. ; Nazarenko, Lyudmila P. ; Skryabin, Nikolay A. ; Nikitina, Tatiana V. ; Vasilyev, Stanislav A. ; Tolmacheva, Ekaterina N. ; Lopatkina, Mariya E. ; Salyukova, Olga A. ; Chechetkina, Nataliya N. ; Vorotelyak, Ekaterina A. ; Kalabusheva, Ekaterina P. ; Fishman, Veniamin S. ; Kzhyshkowska, Julia ; Graziano, Claudio ; Magini, Pamela ; Romeo, Giovanni ; Lebedev, Igor N.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3648-f1dd907934b063403f6c203440157b3dcad012425fb95aba36dea40f24d259733</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>18p11.32 microduplication</topic><topic>Chromosome 18</topic><topic>Copy number</topic><topic>developmental delay</topic><topic>Diabetes mellitus</topic><topic>EMILIN2</topic><topic>Exons</topic><topic>Fibroblasts</topic><topic>Genes</topic><topic>Hybridization</topic><topic>Intellectual disabilities</topic><topic>intellectual disability</topic><topic>Keratosis</topic><topic>keratosis pilaris</topic><topic>LAMA1</topic><topic>LPIN2</topic><topic>Lymphocytes</topic><topic>METTL4</topic><topic>Monosomy</topic><topic>mosaic CNVs</topic><topic>NDC80</topic><topic>Nose</topic><topic>Phenotypes</topic><topic>Skin diseases</topic><topic>SMCHD1</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kashevarova, Anna A.</creatorcontrib><creatorcontrib>Nazarenko, Lyudmila P.</creatorcontrib><creatorcontrib>Skryabin, Nikolay A.</creatorcontrib><creatorcontrib>Nikitina, Tatiana V.</creatorcontrib><creatorcontrib>Vasilyev, Stanislav A.</creatorcontrib><creatorcontrib>Tolmacheva, Ekaterina N.</creatorcontrib><creatorcontrib>Lopatkina, Mariya E.</creatorcontrib><creatorcontrib>Salyukova, Olga A.</creatorcontrib><creatorcontrib>Chechetkina, Nataliya N.</creatorcontrib><creatorcontrib>Vorotelyak, Ekaterina A.</creatorcontrib><creatorcontrib>Kalabusheva, Ekaterina P.</creatorcontrib><creatorcontrib>Fishman, Veniamin S.</creatorcontrib><creatorcontrib>Kzhyshkowska, Julia</creatorcontrib><creatorcontrib>Graziano, Claudio</creatorcontrib><creatorcontrib>Magini, Pamela</creatorcontrib><creatorcontrib>Romeo, Giovanni</creatorcontrib><creatorcontrib>Lebedev, Igor N.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>American journal of medical genetics. Part A</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kashevarova, Anna A.</au><au>Nazarenko, Lyudmila P.</au><au>Skryabin, Nikolay A.</au><au>Nikitina, Tatiana V.</au><au>Vasilyev, Stanislav A.</au><au>Tolmacheva, Ekaterina N.</au><au>Lopatkina, Mariya E.</au><au>Salyukova, Olga A.</au><au>Chechetkina, Nataliya N.</au><au>Vorotelyak, Ekaterina A.</au><au>Kalabusheva, Ekaterina P.</au><au>Fishman, Veniamin S.</au><au>Kzhyshkowska, Julia</au><au>Graziano, Claudio</au><au>Magini, Pamela</au><au>Romeo, Giovanni</au><au>Lebedev, Igor N.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability</atitle><jtitle>American journal of medical genetics. Part A</jtitle><addtitle>Am J Med Genet A</addtitle><date>2018-11</date><risdate>2018</risdate><volume>176</volume><issue>11</issue><spage>2395</spage><epage>2403</epage><pages>2395-2403</pages><issn>1552-4825</issn><eissn>1552-4833</eissn><abstract>The application of array‐based comparative genomic hybridization and next‐generation sequencing has identified many chromosomal microdeletions and microduplications in patients with different pathological phenotypes. Different copy number variations are described within the short arm of chromosome 18 in patients with skin diseases. In particular, full or partial monosomy 18p has also been associated with keratosis pilaris. Here, for the first time, we report a young male patient with intellectual disability, diabetes mellitus (type I), and keratosis pilaris, who exhibited a de novo 45‐kb microduplication of exons 4–22 of LAMA1, located at 18p11.31, and a 432‐kb 18p11.32 microduplication of paternal origin containing the genes METTL4, NDC80, and CBX3P2 and exons 1–15 of the SMCHD1 gene. The microduplication of LAMA1 was identified in skin fibroblasts but not in lymphocytes, whereas the larger microduplication was present in both tissues. We propose LAMA1 as a novel candidate gene for keratosis pilaris. Although inherited from a healthy father, the 18p11.32 microduplication, which included relevant genes, could also contribute to phenotype manifestation.</abstract><cop>Hoboken, USA</cop><pub>John Wiley & Sons, Inc</pub><pmid>30244536</pmid><doi>10.1002/ajmg.a.40478</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-0716-4302</orcidid></addata></record> |
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subjects | 18p11.32 microduplication Chromosome 18 Copy number developmental delay Diabetes mellitus EMILIN2 Exons Fibroblasts Genes Hybridization Intellectual disabilities intellectual disability Keratosis keratosis pilaris LAMA1 LPIN2 Lymphocytes METTL4 Monosomy mosaic CNVs NDC80 Nose Phenotypes Skin diseases SMCHD1 |
title | A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability |
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