Cellulase–Hemicellulase Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems
Soil microorganisms are important mediators of carbon cycling in nature. Although cellulose-and hemicellulose-degrading bacteria have been isolated from Algerian ecosystems, the information on the composition of soil bacterial communities and thus the potential of their members to decompose plant re...
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| Veröffentlicht in: | Microbial ecology 2019-04, Vol.77 (3), p.713-725 |
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| creator | Houfani, Aicha Asma Větrovský, Tomáš Navarrete, Oscar U. Štursová, Martina Tláskal, Vojtěch Beiko, Robert G. Boucherba, Nawel Baldrian, Petr Benallaoua, Said Jorquera, Milko A. |
| description | Soil microorganisms are important mediators of carbon cycling in nature. Although cellulose-and hemicellulose-degrading bacteria have been isolated from Algerian ecosystems, the information on the composition of soil bacterial communities and thus the potential of their members to decompose plant residues is still limited. The objective of the present study was to describe and compare the bacterial community composition in Algerian soils (crop, forest, garden, and desert) and the activity of cellulose-and hemicellulose-degrading enzymes. Bacterial communities were characterized by high-throughput 16S amplicon sequencing followed by the in silico prediction of their functional potential. The highest lignocellulolytic activity was recorded in forest and garden soils whereas activities in the agricultural and desert soils were typically low. The bacterial phyla Proteobacteria (in particular classes α–proteobacteria, δ–proteobacteria, and γ–proteobacteria), Firmicutes, and Actinobacteria dominated in all soils. Forest and garden soils exhibited higher diversity than agricultural and desert soils. Endocellulase activity was elevated in forest and garden soils. In silico analysis predicted higher share of genes assigned to general metabolism in forest and garden soils compared with agricultural and arid soils, particularly in carbohydrate metabolism. The highest potential of lignocellulose decomposition was predicted for forest soils, which is in agreement with the highest activity of corresponding enzymes. |
| doi_str_mv | 10.1007/s00248-018-1251-8 |
| format | Article |
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Although cellulose-and hemicellulose-degrading bacteria have been isolated from Algerian ecosystems, the information on the composition of soil bacterial communities and thus the potential of their members to decompose plant residues is still limited. The objective of the present study was to describe and compare the bacterial community composition in Algerian soils (crop, forest, garden, and desert) and the activity of cellulose-and hemicellulose-degrading enzymes. Bacterial communities were characterized by high-throughput 16S amplicon sequencing followed by the in silico prediction of their functional potential. The highest lignocellulolytic activity was recorded in forest and garden soils whereas activities in the agricultural and desert soils were typically low. The bacterial phyla Proteobacteria (in particular classes α–proteobacteria, δ–proteobacteria, and γ–proteobacteria), Firmicutes, and Actinobacteria dominated in all soils. Forest and garden soils exhibited higher diversity than agricultural and desert soils. Endocellulase activity was elevated in forest and garden soils. In silico analysis predicted higher share of genes assigned to general metabolism in forest and garden soils compared with agricultural and arid soils, particularly in carbohydrate metabolism. The highest potential of lignocellulose decomposition was predicted for forest soils, which is in agreement with the highest activity of corresponding enzymes.</description><identifier>ISSN: 0095-3628</identifier><identifier>EISSN: 1432-184X</identifier><identifier>DOI: 10.1007/s00248-018-1251-8</identifier><identifier>PMID: 30209585</identifier><language>eng</language><publisher>New York: Springer Science + Business Media</publisher><subject>Aridity ; Bacteria ; Biodegradation ; Biomedical and Life Sciences ; Carbohydrate metabolism ; Carbohydrates ; Carbon cycle ; Cellulase ; Cellulose ; Communities ; Community composition ; Composition ; Decomposition ; Desert environments ; Desert soils ; Deserts ; Ecology ; Ecosystems ; Enzymes ; Forest soils ; Forests ; Gardens & gardening ; Genes ; Geoecology/Natural Processes ; Hemicellulose ; Life Sciences ; Lignocellulose ; Metabolism ; Microbial Ecology ; Microbiology ; Microorganisms ; Nature Conservation ; Predictions ; Sandy soils ; Soil ; Soil analysis ; SOIL MICROBIOLOGY ; Soil microorganisms ; Soils ; Water Quality/Water Pollution</subject><ispartof>Microbial ecology, 2019-04, Vol.77 (3), p.713-725</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2018</rights><rights>Microbial Ecology is a copyright of Springer, (2018). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c394t-cd2926732d6cb30ac71fc13a02b9f692529c442b9b33392f5378f08b025395c73</citedby><cites>FETCH-LOGICAL-c394t-cd2926732d6cb30ac71fc13a02b9f692529c442b9b33392f5378f08b025395c73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/48702322$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/48702322$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27924,27925,41488,42557,51319,58017,58250</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30209585$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Houfani, Aicha Asma</creatorcontrib><creatorcontrib>Větrovský, Tomáš</creatorcontrib><creatorcontrib>Navarrete, Oscar U.</creatorcontrib><creatorcontrib>Štursová, Martina</creatorcontrib><creatorcontrib>Tláskal, Vojtěch</creatorcontrib><creatorcontrib>Beiko, Robert G.</creatorcontrib><creatorcontrib>Boucherba, Nawel</creatorcontrib><creatorcontrib>Baldrian, Petr</creatorcontrib><creatorcontrib>Benallaoua, Said</creatorcontrib><creatorcontrib>Jorquera, Milko A.</creatorcontrib><title>Cellulase–Hemicellulase Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems</title><title>Microbial ecology</title><addtitle>Microb Ecol</addtitle><addtitle>Microb Ecol</addtitle><description>Soil microorganisms are important mediators of carbon cycling in nature. Although cellulose-and hemicellulose-degrading bacteria have been isolated from Algerian ecosystems, the information on the composition of soil bacterial communities and thus the potential of their members to decompose plant residues is still limited. The objective of the present study was to describe and compare the bacterial community composition in Algerian soils (crop, forest, garden, and desert) and the activity of cellulose-and hemicellulose-degrading enzymes. Bacterial communities were characterized by high-throughput 16S amplicon sequencing followed by the in silico prediction of their functional potential. The highest lignocellulolytic activity was recorded in forest and garden soils whereas activities in the agricultural and desert soils were typically low. The bacterial phyla Proteobacteria (in particular classes α–proteobacteria, δ–proteobacteria, and γ–proteobacteria), Firmicutes, and Actinobacteria dominated in all soils. Forest and garden soils exhibited higher diversity than agricultural and desert soils. Endocellulase activity was elevated in forest and garden soils. In silico analysis predicted higher share of genes assigned to general metabolism in forest and garden soils compared with agricultural and arid soils, particularly in carbohydrate metabolism. The highest potential of lignocellulose decomposition was predicted for forest soils, which is in agreement with the highest activity of corresponding enzymes.</description><subject>Aridity</subject><subject>Bacteria</subject><subject>Biodegradation</subject><subject>Biomedical and Life Sciences</subject><subject>Carbohydrate metabolism</subject><subject>Carbohydrates</subject><subject>Carbon cycle</subject><subject>Cellulase</subject><subject>Cellulose</subject><subject>Communities</subject><subject>Community composition</subject><subject>Composition</subject><subject>Decomposition</subject><subject>Desert environments</subject><subject>Desert soils</subject><subject>Deserts</subject><subject>Ecology</subject><subject>Ecosystems</subject><subject>Enzymes</subject><subject>Forest soils</subject><subject>Forests</subject><subject>Gardens & gardening</subject><subject>Genes</subject><subject>Geoecology/Natural Processes</subject><subject>Hemicellulose</subject><subject>Life Sciences</subject><subject>Lignocellulose</subject><subject>Metabolism</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Nature Conservation</subject><subject>Predictions</subject><subject>Sandy soils</subject><subject>Soil</subject><subject>Soil analysis</subject><subject>SOIL MICROBIOLOGY</subject><subject>Soil microorganisms</subject><subject>Soils</subject><subject>Water Quality/Water 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Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems</title><author>Houfani, Aicha Asma ; Větrovský, Tomáš ; Navarrete, Oscar U. ; Štursová, Martina ; Tláskal, Vojtěch ; Beiko, Robert G. ; Boucherba, Nawel ; Baldrian, Petr ; Benallaoua, Said ; Jorquera, Milko A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c394t-cd2926732d6cb30ac71fc13a02b9f692529c442b9b33392f5378f08b025395c73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Aridity</topic><topic>Bacteria</topic><topic>Biodegradation</topic><topic>Biomedical and Life Sciences</topic><topic>Carbohydrate metabolism</topic><topic>Carbohydrates</topic><topic>Carbon cycle</topic><topic>Cellulase</topic><topic>Cellulose</topic><topic>Communities</topic><topic>Community composition</topic><topic>Composition</topic><topic>Decomposition</topic><topic>Desert environments</topic><topic>Desert soils</topic><topic>Deserts</topic><topic>Ecology</topic><topic>Ecosystems</topic><topic>Enzymes</topic><topic>Forest soils</topic><topic>Forests</topic><topic>Gardens & gardening</topic><topic>Genes</topic><topic>Geoecology/Natural Processes</topic><topic>Hemicellulose</topic><topic>Life Sciences</topic><topic>Lignocellulose</topic><topic>Metabolism</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Nature Conservation</topic><topic>Predictions</topic><topic>Sandy soils</topic><topic>Soil</topic><topic>Soil analysis</topic><topic>SOIL MICROBIOLOGY</topic><topic>Soil microorganisms</topic><topic>Soils</topic><topic>Water Quality/Water Pollution</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Houfani, Aicha Asma</creatorcontrib><creatorcontrib>Větrovský, Tomáš</creatorcontrib><creatorcontrib>Navarrete, Oscar U.</creatorcontrib><creatorcontrib>Štursová, 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Although cellulose-and hemicellulose-degrading bacteria have been isolated from Algerian ecosystems, the information on the composition of soil bacterial communities and thus the potential of their members to decompose plant residues is still limited. The objective of the present study was to describe and compare the bacterial community composition in Algerian soils (crop, forest, garden, and desert) and the activity of cellulose-and hemicellulose-degrading enzymes. Bacterial communities were characterized by high-throughput 16S amplicon sequencing followed by the in silico prediction of their functional potential. The highest lignocellulolytic activity was recorded in forest and garden soils whereas activities in the agricultural and desert soils were typically low. The bacterial phyla Proteobacteria (in particular classes α–proteobacteria, δ–proteobacteria, and γ–proteobacteria), Firmicutes, and Actinobacteria dominated in all soils. Forest and garden soils exhibited higher diversity than agricultural and desert soils. Endocellulase activity was elevated in forest and garden soils. In silico analysis predicted higher share of genes assigned to general metabolism in forest and garden soils compared with agricultural and arid soils, particularly in carbohydrate metabolism. The highest potential of lignocellulose decomposition was predicted for forest soils, which is in agreement with the highest activity of corresponding enzymes.</abstract><cop>New York</cop><pub>Springer Science + Business Media</pub><pmid>30209585</pmid><doi>10.1007/s00248-018-1251-8</doi><tpages>13</tpages></addata></record> |
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| ispartof | Microbial ecology, 2019-04, Vol.77 (3), p.713-725 |
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| subjects | Aridity Bacteria Biodegradation Biomedical and Life Sciences Carbohydrate metabolism Carbohydrates Carbon cycle Cellulase Cellulose Communities Community composition Composition Decomposition Desert environments Desert soils Deserts Ecology Ecosystems Enzymes Forest soils Forests Gardens & gardening Genes Geoecology/Natural Processes Hemicellulose Life Sciences Lignocellulose Metabolism Microbial Ecology Microbiology Microorganisms Nature Conservation Predictions Sandy soils Soil Soil analysis SOIL MICROBIOLOGY Soil microorganisms Soils Water Quality/Water Pollution |
| title | Cellulase–Hemicellulase Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems |
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