Microbial community of nitrogen cycle‐related genes in aquatic plant rhizospheres of Lake Liangzi in winter
This study investigated the community structure of ammonia‐oxidizing bacteria /archaea (AOB and AOA), as well as the effects of four aquatic plants (namely Ceratophyllum demersum, Hydrilla verticillata, Potamogeton crispus, and Nymphaea tetragona) rhizospheres on the abundance of AOB amoA, AOA amoA,...
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| Veröffentlicht in: | Journal of basic microbiology 2018-11, Vol.58 (11), p.998-1006 |
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| container_title | Journal of basic microbiology |
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| creator | Yin, Xingjia Liu, Guanglong Peng, Lei Hua, Yumei Wan, Xiaoqiong Zhou, Wenbing Zhao, Jianwei Zhu, Duanwei |
| description | This study investigated the community structure of ammonia‐oxidizing bacteria /archaea (AOB and AOA), as well as the effects of four aquatic plants (namely Ceratophyllum demersum, Hydrilla verticillata, Potamogeton crispus, and Nymphaea tetragona) rhizospheres on the abundance of AOB amoA, AOA amoA, anammox 16S rRNA, nirK, and nirS in Lake Liangzi, China. Phylogenetic analysis revealed that most AOB groups were Nitrosospira and Nitrosomonas, in which Nitrosospira was dominant. The AOA amoA were affiliated with two branches of classical sequences which belonging to Thaumarchaeota: water/sediments branch and soil/sediments branch. The abundance of AOA amoA in the rhizospheres of aquatic plants were higher than in the non‐rhizosphere (p |
| doi_str_mv | 10.1002/jobm.201800220 |
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Phylogenetic analysis revealed that most AOB groups were Nitrosospira and Nitrosomonas, in which Nitrosospira was dominant. The AOA amoA were affiliated with two branches of classical sequences which belonging to Thaumarchaeota: water/sediments branch and soil/sediments branch. The abundance of AOA amoA in the rhizospheres of aquatic plants were higher than in the non‐rhizosphere (p < 0.05), indicating that aquatic plants may promote the growth of AOA. However, the anammox 16S rRNA showed the opposite trend relative to AOA amoA (p < 0.05). Redundancy analysis (RDA) showed that the differences in abundance of AOB, AOA, anammox bacteria, and denitrifying bacteria are very likely related to the different contents of ammonia nitrogen (NH4+‐N), pH and dissolved oxygen (DO) and thus to the rhizosphere states of aquatic plants.</description><identifier>ISSN: 0233-111X</identifier><identifier>EISSN: 1521-4028</identifier><identifier>DOI: 10.1002/jobm.201800220</identifier><identifier>PMID: 30117537</identifier><language>eng</language><publisher>Germany</publisher><subject>aquatic plant ; Archaea - classification ; Archaea - genetics ; Archaea - isolation & purification ; Archaea - metabolism ; Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; Bacteria - metabolism ; Biodiversity ; China ; Genes, Archaeal - genetics ; Genes, Bacterial - genetics ; Geologic Sediments - microbiology ; Lakes - microbiology ; Nitrogen Cycle - genetics ; nitrogen cycle‐related genes ; Oxidation-Reduction ; Phylogeny ; real‐time quantitative PCR ; Rhizosphere ; RNA, Ribosomal, 16S - genetics ; Seasons ; sediment</subject><ispartof>Journal of basic microbiology, 2018-11, Vol.58 (11), p.998-1006</ispartof><rights>2018 WILEY-VCH Verlag GmbH & Co. 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KGaA, Weinheim.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3450-6d30f47934554fb1b75a954bc86be6488e3a9335b44681ec8f135c9bd9395e83</citedby><cites>FETCH-LOGICAL-c3450-6d30f47934554fb1b75a954bc86be6488e3a9335b44681ec8f135c9bd9395e83</cites><orcidid>0000-0003-1870-1465</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjobm.201800220$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjobm.201800220$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30117537$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yin, Xingjia</creatorcontrib><creatorcontrib>Liu, Guanglong</creatorcontrib><creatorcontrib>Peng, Lei</creatorcontrib><creatorcontrib>Hua, Yumei</creatorcontrib><creatorcontrib>Wan, Xiaoqiong</creatorcontrib><creatorcontrib>Zhou, Wenbing</creatorcontrib><creatorcontrib>Zhao, Jianwei</creatorcontrib><creatorcontrib>Zhu, Duanwei</creatorcontrib><title>Microbial community of nitrogen cycle‐related genes in aquatic plant rhizospheres of Lake Liangzi in winter</title><title>Journal of basic microbiology</title><addtitle>J Basic Microbiol</addtitle><description>This study investigated the community structure of ammonia‐oxidizing bacteria /archaea (AOB and AOA), as well as the effects of four aquatic plants (namely Ceratophyllum demersum, Hydrilla verticillata, Potamogeton crispus, and Nymphaea tetragona) rhizospheres on the abundance of AOB amoA, AOA amoA, anammox 16S rRNA, nirK, and nirS in Lake Liangzi, China. Phylogenetic analysis revealed that most AOB groups were Nitrosospira and Nitrosomonas, in which Nitrosospira was dominant. The AOA amoA were affiliated with two branches of classical sequences which belonging to Thaumarchaeota: water/sediments branch and soil/sediments branch. The abundance of AOA amoA in the rhizospheres of aquatic plants were higher than in the non‐rhizosphere (p < 0.05), indicating that aquatic plants may promote the growth of AOA. However, the anammox 16S rRNA showed the opposite trend relative to AOA amoA (p < 0.05). Redundancy analysis (RDA) showed that the differences in abundance of AOB, AOA, anammox bacteria, and denitrifying bacteria are very likely related to the different contents of ammonia nitrogen (NH4+‐N), pH and dissolved oxygen (DO) and thus to the rhizosphere states of aquatic plants.</description><subject>aquatic plant</subject><subject>Archaea - classification</subject><subject>Archaea - genetics</subject><subject>Archaea - isolation & purification</subject><subject>Archaea - metabolism</subject><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation & purification</subject><subject>Bacteria - metabolism</subject><subject>Biodiversity</subject><subject>China</subject><subject>Genes, Archaeal - genetics</subject><subject>Genes, Bacterial - genetics</subject><subject>Geologic Sediments - microbiology</subject><subject>Lakes - microbiology</subject><subject>Nitrogen Cycle - genetics</subject><subject>nitrogen cycle‐related genes</subject><subject>Oxidation-Reduction</subject><subject>Phylogeny</subject><subject>real‐time quantitative PCR</subject><subject>Rhizosphere</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seasons</subject><subject>sediment</subject><issn>0233-111X</issn><issn>1521-4028</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkLlOAzEQhi0EIuFoKZFLmg0-1rt2CYhTiWhS0K1sZxYc9gj2rlCoeASekSfBUUIoqUYz882v0YfQCSUjSgg7n7emHjFCZWwY2UFDKhhNUsLkLhoSxnlCKX0aoIMQ5oQQpZjaRwNOKM0Fz4eonjjrW-N0hW1b133juiVuSxyrb5-hwXZpK_j-_PJQ6Q5mOM4gYNdg_dbrzlm8qHTTYf_iPtqweAEft_F-rF8Bj51unj_cin53TQf-CO2VugpwvKmHaHpzPb26S8aPt_dXF-PE8lSQJJtxUqa5io1IS0NNLrQSqbEyM5ClUgLXinNh0jSTFKwsKRdWmZniSoDkh-hsHbvw7VsPoStqFyxU8VNo-1AwIpUULJdZREdrNFoIwUNZLLyrtV8WlBQrw8XKcLE1HA9ON9m9qWG2xX-VRkCtgXdXwfKfuOLh8XLyF_4DUVOJww</recordid><startdate>201811</startdate><enddate>201811</enddate><creator>Yin, Xingjia</creator><creator>Liu, Guanglong</creator><creator>Peng, Lei</creator><creator>Hua, Yumei</creator><creator>Wan, Xiaoqiong</creator><creator>Zhou, Wenbing</creator><creator>Zhao, Jianwei</creator><creator>Zhu, Duanwei</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-1870-1465</orcidid></search><sort><creationdate>201811</creationdate><title>Microbial community of nitrogen cycle‐related genes in aquatic plant rhizospheres of Lake Liangzi in winter</title><author>Yin, Xingjia ; Liu, Guanglong ; Peng, Lei ; Hua, Yumei ; Wan, Xiaoqiong ; Zhou, Wenbing ; Zhao, Jianwei ; Zhu, Duanwei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3450-6d30f47934554fb1b75a954bc86be6488e3a9335b44681ec8f135c9bd9395e83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>aquatic plant</topic><topic>Archaea - classification</topic><topic>Archaea - genetics</topic><topic>Archaea - isolation & purification</topic><topic>Archaea - metabolism</topic><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>Bacteria - isolation & purification</topic><topic>Bacteria - metabolism</topic><topic>Biodiversity</topic><topic>China</topic><topic>Genes, Archaeal - genetics</topic><topic>Genes, Bacterial - genetics</topic><topic>Geologic Sediments - microbiology</topic><topic>Lakes - microbiology</topic><topic>Nitrogen Cycle - genetics</topic><topic>nitrogen cycle‐related genes</topic><topic>Oxidation-Reduction</topic><topic>Phylogeny</topic><topic>real‐time quantitative PCR</topic><topic>Rhizosphere</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seasons</topic><topic>sediment</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yin, Xingjia</creatorcontrib><creatorcontrib>Liu, Guanglong</creatorcontrib><creatorcontrib>Peng, Lei</creatorcontrib><creatorcontrib>Hua, Yumei</creatorcontrib><creatorcontrib>Wan, Xiaoqiong</creatorcontrib><creatorcontrib>Zhou, Wenbing</creatorcontrib><creatorcontrib>Zhao, Jianwei</creatorcontrib><creatorcontrib>Zhu, Duanwei</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of basic microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yin, Xingjia</au><au>Liu, Guanglong</au><au>Peng, Lei</au><au>Hua, Yumei</au><au>Wan, Xiaoqiong</au><au>Zhou, Wenbing</au><au>Zhao, Jianwei</au><au>Zhu, Duanwei</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Microbial community of nitrogen cycle‐related genes in aquatic plant rhizospheres of Lake Liangzi in winter</atitle><jtitle>Journal of basic microbiology</jtitle><addtitle>J Basic Microbiol</addtitle><date>2018-11</date><risdate>2018</risdate><volume>58</volume><issue>11</issue><spage>998</spage><epage>1006</epage><pages>998-1006</pages><issn>0233-111X</issn><eissn>1521-4028</eissn><abstract>This study investigated the community structure of ammonia‐oxidizing bacteria /archaea (AOB and AOA), as well as the effects of four aquatic plants (namely Ceratophyllum demersum, Hydrilla verticillata, Potamogeton crispus, and Nymphaea tetragona) rhizospheres on the abundance of AOB amoA, AOA amoA, anammox 16S rRNA, nirK, and nirS in Lake Liangzi, China. Phylogenetic analysis revealed that most AOB groups were Nitrosospira and Nitrosomonas, in which Nitrosospira was dominant. The AOA amoA were affiliated with two branches of classical sequences which belonging to Thaumarchaeota: water/sediments branch and soil/sediments branch. The abundance of AOA amoA in the rhizospheres of aquatic plants were higher than in the non‐rhizosphere (p < 0.05), indicating that aquatic plants may promote the growth of AOA. However, the anammox 16S rRNA showed the opposite trend relative to AOA amoA (p < 0.05). Redundancy analysis (RDA) showed that the differences in abundance of AOB, AOA, anammox bacteria, and denitrifying bacteria are very likely related to the different contents of ammonia nitrogen (NH4+‐N), pH and dissolved oxygen (DO) and thus to the rhizosphere states of aquatic plants.</abstract><cop>Germany</cop><pmid>30117537</pmid><doi>10.1002/jobm.201800220</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0003-1870-1465</orcidid></addata></record> |
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| subjects | aquatic plant Archaea - classification Archaea - genetics Archaea - isolation & purification Archaea - metabolism Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Bacteria - metabolism Biodiversity China Genes, Archaeal - genetics Genes, Bacterial - genetics Geologic Sediments - microbiology Lakes - microbiology Nitrogen Cycle - genetics nitrogen cycle‐related genes Oxidation-Reduction Phylogeny real‐time quantitative PCR Rhizosphere RNA, Ribosomal, 16S - genetics Seasons sediment |
| title | Microbial community of nitrogen cycle‐related genes in aquatic plant rhizospheres of Lake Liangzi in winter |
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