Analysis of the bacterial community from high alkaline (pH > 13) drainage water at a brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing
Brown mud, as a waste product of the industrial process of aluminum production, represents a great environmental burden due to its toxicity to living organisms. However, some microorganisms are able to survive in this habitat, and they can be used in bioremediation processes. Traditional cultivation...
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creator | Kisková, Jana Stramová, Zuzana Javorský, Peter Sedláková-Kaduková, Jana Pristaš, Peter |
description | Brown mud, as a waste product of the industrial process of aluminum production, represents a great environmental burden due to its toxicity to living organisms. However, some microorganisms are able to survive in this habitat, and they can be used in bioremediation processes. Traditional cultivation methods have a limited capacity to characterize bacterial composition in environmental samples. Recently, next-generation sequencing methods have provided new perspectives on microbial community studies. The aim of this study was to analyze the bacterial community in the drainage water of brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing. We obtained 9964 sequences assigned to 163 operational taxonomic units belonging to 10 bacterial phyla. The phylum Proteobacteria showed the highest abundance (80.39%) within the bacterial community, followed by Firmicutes (13.05%) and Bacteroidetes (5.64%). Other bacterial phyla showed an abundance lower than 1%. The classification yielded 85 genera.
Sulfurospirillum
spp. (45.19%) dominated the bacterial population, followed by
Pseudomonas
spp. (13.76%) and
Exiguobacterium
spp. (13.02%). These results indicate that high heavy metals content, high pH, and lack of essential nutrients are the drivers of a dramatic reduction of diversity in the bacterial population in this environment. |
doi_str_mv | 10.1007/s12223-018-0634-z |
format | Article |
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Sulfurospirillum
spp. (45.19%) dominated the bacterial population, followed by
Pseudomonas
spp. (13.76%) and
Exiguobacterium
spp. (13.02%). These results indicate that high heavy metals content, high pH, and lack of essential nutrients are the drivers of a dramatic reduction of diversity in the bacterial population in this environment.</description><identifier>ISSN: 0015-5632</identifier><identifier>EISSN: 1874-9356</identifier><identifier>DOI: 10.1007/s12223-018-0634-z</identifier><identifier>PMID: 30084086</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Abundance ; Aluminum ; Applied Microbiology ; Bacteria ; Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; Bacterial Physiological Phenomena ; Biodegradation, Environmental ; Biodiversity ; Biomedical and Life Sciences ; Bioremediation ; Communities ; Cultivation ; Drainage ; Drainage water ; Environmental Engineering/Biotechnology ; Essential nutrients ; Genera ; Heavy metals ; High-Throughput Nucleotide Sequencing ; Hydrogen-Ion Concentration ; Immunology ; Life Sciences ; Metallurgy ; Metals, Heavy - analysis ; Metals, Heavy - metabolism ; Microbial Consortia - genetics ; Microbiology ; Microorganisms ; Mud ; Nutrients ; Original Article ; pH effects ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Slovakia ; Toxicity ; Waste disposal ; Waste Water - chemistry ; Waste Water - microbiology ; Water Pollutants, Chemical - analysis ; Water Pollutants, Chemical - metabolism</subject><ispartof>Folia microbiologica, 2019-01, Vol.64 (1), p.83-90</ispartof><rights>Institute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i. 2018</rights><rights>Folia Microbiologica is a copyright of Springer, (2018). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c372t-b5af73840344527a3ed6a2f3f7438437c1db594a65f9976f9e07a4eaf4a33a2c3</citedby><cites>FETCH-LOGICAL-c372t-b5af73840344527a3ed6a2f3f7438437c1db594a65f9976f9e07a4eaf4a33a2c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12223-018-0634-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12223-018-0634-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30084086$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kisková, Jana</creatorcontrib><creatorcontrib>Stramová, Zuzana</creatorcontrib><creatorcontrib>Javorský, Peter</creatorcontrib><creatorcontrib>Sedláková-Kaduková, Jana</creatorcontrib><creatorcontrib>Pristaš, Peter</creatorcontrib><title>Analysis of the bacterial community from high alkaline (pH > 13) drainage water at a brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing</title><title>Folia microbiologica</title><addtitle>Folia Microbiol</addtitle><addtitle>Folia Microbiol (Praha)</addtitle><description>Brown mud, as a waste product of the industrial process of aluminum production, represents a great environmental burden due to its toxicity to living organisms. However, some microorganisms are able to survive in this habitat, and they can be used in bioremediation processes. Traditional cultivation methods have a limited capacity to characterize bacterial composition in environmental samples. Recently, next-generation sequencing methods have provided new perspectives on microbial community studies. The aim of this study was to analyze the bacterial community in the drainage water of brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing. We obtained 9964 sequences assigned to 163 operational taxonomic units belonging to 10 bacterial phyla. The phylum Proteobacteria showed the highest abundance (80.39%) within the bacterial community, followed by Firmicutes (13.05%) and Bacteroidetes (5.64%). Other bacterial phyla showed an abundance lower than 1%. The classification yielded 85 genera.
Sulfurospirillum
spp. (45.19%) dominated the bacterial population, followed by
Pseudomonas
spp. (13.76%) and
Exiguobacterium
spp. (13.02%). These results indicate that high heavy metals content, high pH, and lack of essential nutrients are the drivers of a dramatic reduction of diversity in the bacterial population in this environment.</description><subject>Abundance</subject><subject>Aluminum</subject><subject>Applied Microbiology</subject><subject>Bacteria</subject><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation & purification</subject><subject>Bacterial Physiological Phenomena</subject><subject>Biodegradation, Environmental</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Bioremediation</subject><subject>Communities</subject><subject>Cultivation</subject><subject>Drainage</subject><subject>Drainage water</subject><subject>Environmental Engineering/Biotechnology</subject><subject>Essential nutrients</subject><subject>Genera</subject><subject>Heavy metals</subject><subject>High-Throughput Nucleotide Sequencing</subject><subject>Hydrogen-Ion Concentration</subject><subject>Immunology</subject><subject>Life Sciences</subject><subject>Metallurgy</subject><subject>Metals, Heavy - analysis</subject><subject>Metals, Heavy - metabolism</subject><subject>Microbial Consortia - genetics</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Mud</subject><subject>Nutrients</subject><subject>Original Article</subject><subject>pH effects</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Slovakia</subject><subject>Toxicity</subject><subject>Waste disposal</subject><subject>Waste Water - chemistry</subject><subject>Waste Water - microbiology</subject><subject>Water Pollutants, Chemical - analysis</subject><subject>Water Pollutants, Chemical - metabolism</subject><issn>0015-5632</issn><issn>1874-9356</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kc-K1EAQxhtR3HH1AbxIgZdZMNp_05PLwu6ijrDgQT2HStLJ9E7SPXYnLtm38UHEg_he9pJVQfDSDVW_7yuqPkKeMvqSUapfRcY5Fxllm4zmQmY398iKbbTMCqHy-2RFKVOZygU_Io9ivKI0p1Lwh-RIULqRdJOvyPczh_0cbQTfwrgzUGE9mmCxh9oPw-TsOEMb_AA72-0A-z321hlYH7ZwCkycQBPQOuwMXGMSAo6AUAV_7WCYGmhsPPiY3KIdDTiDAX5-s-l12MA2eJec1-fo4v7HVzif4xhsjRBMZ717AR96_wX3Fk9gitZ1IJWEwxx8NJ8n4-pUekwetNhH8-TuPyaf3rz-eLHNLt-_fXdxdpnVQvMxqxS2WqSdhZSKaxSmyZG3otUyVYWuWVOpQmKu2qLQeVsYqlEabCUKgbwWx2S9-B6CT7PjWA421qbv0Rk_xZKngxZM6EIl9Pk_6JWfQjrzQjEqmZKJYgtVp3ViMG15CHbAMJeMlrfplku6ZUq3vE23vEmaZ3fOUzWY5o_id5wJ4AsQU8t1Jvwd_X_XX67Rsf4</recordid><startdate>20190101</startdate><enddate>20190101</enddate><creator>Kisková, Jana</creator><creator>Stramová, Zuzana</creator><creator>Javorský, Peter</creator><creator>Sedláková-Kaduková, Jana</creator><creator>Pristaš, Peter</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>20190101</creationdate><title>Analysis of the bacterial community from high alkaline (pH > 13) drainage water at a brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing</title><author>Kisková, Jana ; Stramová, Zuzana ; Javorský, Peter ; Sedláková-Kaduková, Jana ; Pristaš, Peter</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c372t-b5af73840344527a3ed6a2f3f7438437c1db594a65f9976f9e07a4eaf4a33a2c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Abundance</topic><topic>Aluminum</topic><topic>Applied Microbiology</topic><topic>Bacteria</topic><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>Bacteria - isolation & purification</topic><topic>Bacterial Physiological Phenomena</topic><topic>Biodegradation, Environmental</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>Bioremediation</topic><topic>Communities</topic><topic>Cultivation</topic><topic>Drainage</topic><topic>Drainage water</topic><topic>Environmental Engineering/Biotechnology</topic><topic>Essential nutrients</topic><topic>Genera</topic><topic>Heavy metals</topic><topic>High-Throughput Nucleotide Sequencing</topic><topic>Hydrogen-Ion Concentration</topic><topic>Immunology</topic><topic>Life Sciences</topic><topic>Metallurgy</topic><topic>Metals, Heavy - analysis</topic><topic>Metals, Heavy - metabolism</topic><topic>Microbial Consortia - genetics</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Mud</topic><topic>Nutrients</topic><topic>Original Article</topic><topic>pH effects</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Slovakia</topic><topic>Toxicity</topic><topic>Waste disposal</topic><topic>Waste Water - chemistry</topic><topic>Waste Water - microbiology</topic><topic>Water Pollutants, Chemical - analysis</topic><topic>Water Pollutants, Chemical - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kisková, Jana</creatorcontrib><creatorcontrib>Stramová, Zuzana</creatorcontrib><creatorcontrib>Javorský, Peter</creatorcontrib><creatorcontrib>Sedláková-Kaduková, Jana</creatorcontrib><creatorcontrib>Pristaš, Peter</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Folia microbiologica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kisková, Jana</au><au>Stramová, Zuzana</au><au>Javorský, Peter</au><au>Sedláková-Kaduková, Jana</au><au>Pristaš, Peter</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Analysis of the bacterial community from high alkaline (pH > 13) drainage water at a brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing</atitle><jtitle>Folia microbiologica</jtitle><stitle>Folia Microbiol</stitle><addtitle>Folia Microbiol (Praha)</addtitle><date>2019-01-01</date><risdate>2019</risdate><volume>64</volume><issue>1</issue><spage>83</spage><epage>90</epage><pages>83-90</pages><issn>0015-5632</issn><eissn>1874-9356</eissn><abstract>Brown mud, as a waste product of the industrial process of aluminum production, represents a great environmental burden due to its toxicity to living organisms. However, some microorganisms are able to survive in this habitat, and they can be used in bioremediation processes. Traditional cultivation methods have a limited capacity to characterize bacterial composition in environmental samples. Recently, next-generation sequencing methods have provided new perspectives on microbial community studies. The aim of this study was to analyze the bacterial community in the drainage water of brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing. We obtained 9964 sequences assigned to 163 operational taxonomic units belonging to 10 bacterial phyla. The phylum Proteobacteria showed the highest abundance (80.39%) within the bacterial community, followed by Firmicutes (13.05%) and Bacteroidetes (5.64%). Other bacterial phyla showed an abundance lower than 1%. The classification yielded 85 genera.
Sulfurospirillum
spp. (45.19%) dominated the bacterial population, followed by
Pseudomonas
spp. (13.76%) and
Exiguobacterium
spp. (13.02%). These results indicate that high heavy metals content, high pH, and lack of essential nutrients are the drivers of a dramatic reduction of diversity in the bacterial population in this environment.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>30084086</pmid><doi>10.1007/s12223-018-0634-z</doi><tpages>8</tpages></addata></record> |
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subjects | Abundance Aluminum Applied Microbiology Bacteria Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Bacterial Physiological Phenomena Biodegradation, Environmental Biodiversity Biomedical and Life Sciences Bioremediation Communities Cultivation Drainage Drainage water Environmental Engineering/Biotechnology Essential nutrients Genera Heavy metals High-Throughput Nucleotide Sequencing Hydrogen-Ion Concentration Immunology Life Sciences Metallurgy Metals, Heavy - analysis Metals, Heavy - metabolism Microbial Consortia - genetics Microbiology Microorganisms Mud Nutrients Original Article pH effects Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Slovakia Toxicity Waste disposal Waste Water - chemistry Waste Water - microbiology Water Pollutants, Chemical - analysis Water Pollutants, Chemical - metabolism |
title | Analysis of the bacterial community from high alkaline (pH > 13) drainage water at a brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing |
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