Quantum-mechanical investigation of tetrel bond characteristics based on the point-of-charge (PoC) approach
The point-of-charge (PoC) approach was employed to investigate the characteristics of the tetrel bond from an electrostatic perspective. W–T–XYZ···B nomenclature was suggested where T is a tetrel atom, W is the atom along the σ-hole extension, B is a Lewis base, and X, Y, and Z are three atoms on th...
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description | The point-of-charge (PoC) approach was employed to investigate the characteristics of the tetrel bond from an electrostatic perspective. W–T–XYZ···B nomenclature was suggested where T is a tetrel atom, W is the atom along the σ-hole extension, B is a Lewis base, and X, Y, and Z are three atoms on the same side of the σ-hole. Quantum-mechanical calculations were carried out on F–T–F
3
systems (where T = C, Si, Ge, or Sn) at the MP2/aug-cc-pVTZ level of theory, with PP functions for Ge and Sn atoms. The tetrel bond strength was estimated via the molecular stabilization energy. Tetrel bond strength was found to increase with increasing PoC negativity (i.e., Lewis basicity) and the electronegativity of the W atom. Moreover, the effects of the T···PoC distance, the W–T···PoC angle, and the aqueous medium on the tetrel bond strength were also investigated. Correlations between tetrel bond strength and several atomic and molecular descriptors such as the natural charge on the tetrel atom,
E
HOMO
, and the
p
-orbital contribution to W–T bond hybridization were observed. Contrary to expectations, the tetrel bond strength in F–C–X
3
increased as the electronegativity of X decreased. The σ-node criteria for the studied molecules were also introduced and discussed. The ability of these molecules to simultaneously form more than one tetrel bond was examined via the σ
n
-hole test. In conclusion, the tetrel bond strength was found to be governed by the strengths of (i) the attractive electrostatic interaction of the Lewis base with the σ-hole, (ii) the attractive/repulsive interaction between the Lewis base and the X, Y, and Z atoms, and (iii) the van der Waals interaction between the Lewis base and the X, Y, and Z atoms.
Graphical Abstract
Characterization of tetrel bond using the Point-of-Charge (PoC) approach. |
doi_str_mv | 10.1007/s00894-018-3752-2 |
format | Article |
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3
systems (where T = C, Si, Ge, or Sn) at the MP2/aug-cc-pVTZ level of theory, with PP functions for Ge and Sn atoms. The tetrel bond strength was estimated via the molecular stabilization energy. Tetrel bond strength was found to increase with increasing PoC negativity (i.e., Lewis basicity) and the electronegativity of the W atom. Moreover, the effects of the T···PoC distance, the W–T···PoC angle, and the aqueous medium on the tetrel bond strength were also investigated. Correlations between tetrel bond strength and several atomic and molecular descriptors such as the natural charge on the tetrel atom,
E
HOMO
, and the
p
-orbital contribution to W–T bond hybridization were observed. Contrary to expectations, the tetrel bond strength in F–C–X
3
increased as the electronegativity of X decreased. The σ-node criteria for the studied molecules were also introduced and discussed. The ability of these molecules to simultaneously form more than one tetrel bond was examined via the σ
n
-hole test. In conclusion, the tetrel bond strength was found to be governed by the strengths of (i) the attractive electrostatic interaction of the Lewis base with the σ-hole, (ii) the attractive/repulsive interaction between the Lewis base and the X, Y, and Z atoms, and (iii) the van der Waals interaction between the Lewis base and the X, Y, and Z atoms.
Graphical Abstract
Characterization of tetrel bond using the Point-of-Charge (PoC) approach.</description><identifier>ISSN: 1610-2940</identifier><identifier>EISSN: 0948-5023</identifier><identifier>DOI: 10.1007/s00894-018-3752-2</identifier><identifier>PMID: 30054722</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Basicity ; Bond strength ; Bonding strength ; Characterization and Evaluation of Materials ; Chemical bonds ; Chemistry ; Chemistry and Materials Science ; Computer Appl. in Life Sciences ; Computer Applications in Chemistry ; Electronegativity ; Germanium ; Investigations ; Lewis base ; Molecular Medicine ; Original Paper ; Silicon ; Theoretical and Computational Chemistry ; Tin</subject><ispartof>Journal of molecular modeling, 2018-08, Vol.24 (8), p.219-13, Article 219</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2018</rights><rights>Copyright Springer Science & Business Media 2018</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c372t-bc954f2856d2f60b2424f8e5ad93a5fc18788c01e8ebee29b2a886c9688ffcc73</citedby><cites>FETCH-LOGICAL-c372t-bc954f2856d2f60b2424f8e5ad93a5fc18788c01e8ebee29b2a886c9688ffcc73</cites><orcidid>0000-0003-4819-2040</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00894-018-3752-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00894-018-3752-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30054722$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ibrahim, Mahmoud A. A.</creatorcontrib><creatorcontrib>Moussa, Nayra A. M.</creatorcontrib><creatorcontrib>Safy, Mohamed E. A.</creatorcontrib><title>Quantum-mechanical investigation of tetrel bond characteristics based on the point-of-charge (PoC) approach</title><title>Journal of molecular modeling</title><addtitle>J Mol Model</addtitle><addtitle>J Mol Model</addtitle><description>The point-of-charge (PoC) approach was employed to investigate the characteristics of the tetrel bond from an electrostatic perspective. W–T–XYZ···B nomenclature was suggested where T is a tetrel atom, W is the atom along the σ-hole extension, B is a Lewis base, and X, Y, and Z are three atoms on the same side of the σ-hole. Quantum-mechanical calculations were carried out on F–T–F
3
systems (where T = C, Si, Ge, or Sn) at the MP2/aug-cc-pVTZ level of theory, with PP functions for Ge and Sn atoms. The tetrel bond strength was estimated via the molecular stabilization energy. Tetrel bond strength was found to increase with increasing PoC negativity (i.e., Lewis basicity) and the electronegativity of the W atom. Moreover, the effects of the T···PoC distance, the W–T···PoC angle, and the aqueous medium on the tetrel bond strength were also investigated. Correlations between tetrel bond strength and several atomic and molecular descriptors such as the natural charge on the tetrel atom,
E
HOMO
, and the
p
-orbital contribution to W–T bond hybridization were observed. Contrary to expectations, the tetrel bond strength in F–C–X
3
increased as the electronegativity of X decreased. The σ-node criteria for the studied molecules were also introduced and discussed. The ability of these molecules to simultaneously form more than one tetrel bond was examined via the σ
n
-hole test. In conclusion, the tetrel bond strength was found to be governed by the strengths of (i) the attractive electrostatic interaction of the Lewis base with the σ-hole, (ii) the attractive/repulsive interaction between the Lewis base and the X, Y, and Z atoms, and (iii) the van der Waals interaction between the Lewis base and the X, Y, and Z atoms.
Graphical Abstract
Characterization of tetrel bond using the Point-of-Charge (PoC) approach.</description><subject>Basicity</subject><subject>Bond strength</subject><subject>Bonding strength</subject><subject>Characterization and Evaluation of Materials</subject><subject>Chemical bonds</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>Computer Appl. in Life Sciences</subject><subject>Computer Applications in Chemistry</subject><subject>Electronegativity</subject><subject>Germanium</subject><subject>Investigations</subject><subject>Lewis base</subject><subject>Molecular Medicine</subject><subject>Original Paper</subject><subject>Silicon</subject><subject>Theoretical and Computational Chemistry</subject><subject>Tin</subject><issn>1610-2940</issn><issn>0948-5023</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp10c-L1TAQB_AgivtY9w_wIgEv6yHrZNo06VEe_oIFFfRc0nTyXte2eSap4H9vylsVFjzlkM_MZPJl7LmEGwmgXycA09YCpBGVVijwEdtBWxuhAKvHbCcbCQLbGi7YVUp3ACBRNQrxKbuoAFStEXfs-5fVLnmdxUzuaJfR2YmPy09KeTzYPIaFB88z5UgT78My8KKidZniWIhLvLeJBl5cPhI_hXHJInixqQPx689h_4rb0ykG647P2BNvp0RX9-cl-_bu7df9B3H76f3H_Ztb4SqNWfSuVbVHo5oBfQM91lh7Q8oObWWVd9JoYxxIMtQTYdujNaZxbWOM987p6pJdn_uWsT_Wsko3j8nRNNmFwpo6BG2UqRtVFfryAb0La1zK6zalldTaYFHyrFwMKUXy3SmOs42_OgndFkZ3DqMrYXRbGN1W8-K-89rPNPyt-PP1BeAZpHK1HCj-G_3_rr8BAY2Ukw</recordid><startdate>20180801</startdate><enddate>20180801</enddate><creator>Ibrahim, Mahmoud A. A.</creator><creator>Moussa, Nayra A. M.</creator><creator>Safy, Mohamed E. A.</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-4819-2040</orcidid></search><sort><creationdate>20180801</creationdate><title>Quantum-mechanical investigation of tetrel bond characteristics based on the point-of-charge (PoC) approach</title><author>Ibrahim, Mahmoud A. A. ; Moussa, Nayra A. M. ; Safy, Mohamed E. A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c372t-bc954f2856d2f60b2424f8e5ad93a5fc18788c01e8ebee29b2a886c9688ffcc73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Basicity</topic><topic>Bond strength</topic><topic>Bonding strength</topic><topic>Characterization and Evaluation of Materials</topic><topic>Chemical bonds</topic><topic>Chemistry</topic><topic>Chemistry and Materials Science</topic><topic>Computer Appl. in Life Sciences</topic><topic>Computer Applications in Chemistry</topic><topic>Electronegativity</topic><topic>Germanium</topic><topic>Investigations</topic><topic>Lewis base</topic><topic>Molecular Medicine</topic><topic>Original Paper</topic><topic>Silicon</topic><topic>Theoretical and Computational Chemistry</topic><topic>Tin</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ibrahim, Mahmoud A. A.</creatorcontrib><creatorcontrib>Moussa, Nayra A. M.</creatorcontrib><creatorcontrib>Safy, Mohamed E. A.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular modeling</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ibrahim, Mahmoud A. A.</au><au>Moussa, Nayra A. M.</au><au>Safy, Mohamed E. A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantum-mechanical investigation of tetrel bond characteristics based on the point-of-charge (PoC) approach</atitle><jtitle>Journal of molecular modeling</jtitle><stitle>J Mol Model</stitle><addtitle>J Mol Model</addtitle><date>2018-08-01</date><risdate>2018</risdate><volume>24</volume><issue>8</issue><spage>219</spage><epage>13</epage><pages>219-13</pages><artnum>219</artnum><issn>1610-2940</issn><eissn>0948-5023</eissn><abstract>The point-of-charge (PoC) approach was employed to investigate the characteristics of the tetrel bond from an electrostatic perspective. W–T–XYZ···B nomenclature was suggested where T is a tetrel atom, W is the atom along the σ-hole extension, B is a Lewis base, and X, Y, and Z are three atoms on the same side of the σ-hole. Quantum-mechanical calculations were carried out on F–T–F
3
systems (where T = C, Si, Ge, or Sn) at the MP2/aug-cc-pVTZ level of theory, with PP functions for Ge and Sn atoms. The tetrel bond strength was estimated via the molecular stabilization energy. Tetrel bond strength was found to increase with increasing PoC negativity (i.e., Lewis basicity) and the electronegativity of the W atom. Moreover, the effects of the T···PoC distance, the W–T···PoC angle, and the aqueous medium on the tetrel bond strength were also investigated. Correlations between tetrel bond strength and several atomic and molecular descriptors such as the natural charge on the tetrel atom,
E
HOMO
, and the
p
-orbital contribution to W–T bond hybridization were observed. Contrary to expectations, the tetrel bond strength in F–C–X
3
increased as the electronegativity of X decreased. The σ-node criteria for the studied molecules were also introduced and discussed. The ability of these molecules to simultaneously form more than one tetrel bond was examined via the σ
n
-hole test. In conclusion, the tetrel bond strength was found to be governed by the strengths of (i) the attractive electrostatic interaction of the Lewis base with the σ-hole, (ii) the attractive/repulsive interaction between the Lewis base and the X, Y, and Z atoms, and (iii) the van der Waals interaction between the Lewis base and the X, Y, and Z atoms.
Graphical Abstract
Characterization of tetrel bond using the Point-of-Charge (PoC) approach.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>30054722</pmid><doi>10.1007/s00894-018-3752-2</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0003-4819-2040</orcidid></addata></record> |
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subjects | Basicity Bond strength Bonding strength Characterization and Evaluation of Materials Chemical bonds Chemistry Chemistry and Materials Science Computer Appl. in Life Sciences Computer Applications in Chemistry Electronegativity Germanium Investigations Lewis base Molecular Medicine Original Paper Silicon Theoretical and Computational Chemistry Tin |
title | Quantum-mechanical investigation of tetrel bond characteristics based on the point-of-charge (PoC) approach |
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