Molecular characterization of a distinct begomovirus infecting Allamanda cathartica in Guangdong, China
Virus isolate G10 was obtained from diseased allamanda plants showing leaf curl symptoms in Guangdong, China. The full-length nucleotide sequence of a DNA-A-like molecule of G10 was cloned and sequenced; it comprises 2755 nucleotides and has a typical begomovirus genome organization with six conserv...
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| Veröffentlicht in: | Archives of virology 2009-08, Vol.154 (8), p.1199-1202 |
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| creator | He, Z. F Mao, M. J Yu, H Li, H. P Chen, X |
| description | Virus isolate G10 was obtained from diseased allamanda plants showing leaf curl symptoms in Guangdong, China. The full-length nucleotide sequence of a DNA-A-like molecule of G10 was cloned and sequenced; it comprises 2755 nucleotides and has a typical begomovirus genome organization with six conserved open reading frames. When compared with the DNA-A sequences of other begomoviruses, the complete nucleotide sequence of DNA-A of G10 had the highest sequence identity (81.2%) to tomato leaf curl Guangdong virus (ToLCGuV) isolate G2. This is less than the 89% identity in the complete genome that has been defined as the threshold value for demarcation of species in the genus Begomovirus. The molecular data show that isolate G10 from allamanda in Guangdong, China is a distinct Begomovirus species, for which the name Allamanda leaf curl virus (AlLCV) is proposed. |
| doi_str_mv | 10.1007/s00705-009-0445-2 |
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F ; Mao, M. J ; Yu, H ; Li, H. P ; Chen, X</creator><creatorcontrib>He, Z. F ; Mao, M. J ; Yu, H ; Li, H. P ; Chen, X</creatorcontrib><description>Virus isolate G10 was obtained from diseased allamanda plants showing leaf curl symptoms in Guangdong, China. The full-length nucleotide sequence of a DNA-A-like molecule of G10 was cloned and sequenced; it comprises 2755 nucleotides and has a typical begomovirus genome organization with six conserved open reading frames. When compared with the DNA-A sequences of other begomoviruses, the complete nucleotide sequence of DNA-A of G10 had the highest sequence identity (81.2%) to tomato leaf curl Guangdong virus (ToLCGuV) isolate G2. This is less than the 89% identity in the complete genome that has been defined as the threshold value for demarcation of species in the genus Begomovirus. The molecular data show that isolate G10 from allamanda in Guangdong, China is a distinct Begomovirus species, for which the name Allamanda leaf curl virus (AlLCV) is proposed.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-009-0445-2</identifier><identifier>PMID: 19609637</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Allamanda ; Amino acids ; Apocynaceae - virology ; Base Sequence ; Begomovirus ; Begomovirus - classification ; Begomovirus - genetics ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Brief Review ; China ; Cloning ; Disease ; DNA, Viral - genetics ; Fundamental and applied biological sciences. Psychology ; Genomes ; Infectious Diseases ; Lycopersicon esculentum ; Medical Microbiology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Phylogeny ; Phytopathology. Animal pests. Plant and forest protection ; Plant Diseases - virology ; Plant viruses and viroids ; Sequence Homology, Nucleic Acid ; Virology ; Viruses</subject><ispartof>Archives of virology, 2009-08, Vol.154 (8), p.1199-1202</ispartof><rights>Springer-Verlag 2009</rights><rights>2009 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c423t-5ccbf886e26964e6405e803d1b9b5150c767d3915c040d71ee053614126c65293</citedby><cites>FETCH-LOGICAL-c423t-5ccbf886e26964e6405e803d1b9b5150c767d3915c040d71ee053614126c65293</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-009-0445-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-009-0445-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,781,785,27926,27927,41490,42559,51321</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21904820$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19609637$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>He, Z. F</creatorcontrib><creatorcontrib>Mao, M. J</creatorcontrib><creatorcontrib>Yu, H</creatorcontrib><creatorcontrib>Li, H. P</creatorcontrib><creatorcontrib>Chen, X</creatorcontrib><title>Molecular characterization of a distinct begomovirus infecting Allamanda cathartica in Guangdong, China</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Virus isolate G10 was obtained from diseased allamanda plants showing leaf curl symptoms in Guangdong, China. The full-length nucleotide sequence of a DNA-A-like molecule of G10 was cloned and sequenced; it comprises 2755 nucleotides and has a typical begomovirus genome organization with six conserved open reading frames. When compared with the DNA-A sequences of other begomoviruses, the complete nucleotide sequence of DNA-A of G10 had the highest sequence identity (81.2%) to tomato leaf curl Guangdong virus (ToLCGuV) isolate G2. This is less than the 89% identity in the complete genome that has been defined as the threshold value for demarcation of species in the genus Begomovirus. The molecular data show that isolate G10 from allamanda in Guangdong, China is a distinct Begomovirus species, for which the name Allamanda leaf curl virus (AlLCV) is proposed.</description><subject>Allamanda</subject><subject>Amino acids</subject><subject>Apocynaceae - virology</subject><subject>Base Sequence</subject><subject>Begomovirus</subject><subject>Begomovirus - classification</subject><subject>Begomovirus - genetics</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brief Review</subject><subject>China</subject><subject>Cloning</subject><subject>Disease</subject><subject>DNA, Viral - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Lycopersicon esculentum</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Phytopathology. Animal pests. Plant and forest protection</subject><subject>Plant Diseases - virology</subject><subject>Plant viruses and viroids</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU9rFTEUxYMo9ln9AG40CLpy9ObvzCzLQ6vQ0oV2He5kMtOUmaQmM0L99OYxDwsuukng3t85OeQQ8prBJwZQf87lAFUBtBVIqSr-hOyYFLxq6rZ5SnYgQFaNhuaEvMj5FqAMhHpOTlirodWi3pHxMk7OrhMmam8woV1c8n9w8THQOFCkvc-LD3ahnRvjHH_7tGbqw-BsGY_0bJpwxtAjtbgUg8VbLGt6vmIY-xjGj3R_4wO-JM8GnLJ7dbxPyfXXLz_336qLq_Pv-7OLykoulkpZ2w1Nox3XrZZOS1CuAdGzru0UU2BrXfeiZcqChL5mzoESmknGtdWKt-KUfNh871L8tbq8mNln60rK4OKaDYe6lsWkgO_-A2_jmkLJZjjjErhoeIHYBtkUc05uMHfJz5juDQNzqMBsFZhSgTlUYA6aN0fjtZtd_6A4_nkB3h8BzBanIWGwPv_jOGtBNhwKxzcul1UYXXpI-NjrbzfRgNHgmIrx9Q8OTADTuj4E-AvJX6Yu</recordid><startdate>20090801</startdate><enddate>20090801</enddate><creator>He, Z. 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F ; Mao, M. J ; Yu, H ; Li, H. P ; Chen, X</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c423t-5ccbf886e26964e6405e803d1b9b5150c767d3915c040d71ee053614126c65293</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Allamanda</topic><topic>Amino acids</topic><topic>Apocynaceae - virology</topic><topic>Base Sequence</topic><topic>Begomovirus</topic><topic>Begomovirus - classification</topic><topic>Begomovirus - genetics</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Brief Review</topic><topic>China</topic><topic>Cloning</topic><topic>Disease</topic><topic>DNA, Viral - genetics</topic><topic>Fundamental and applied biological sciences. 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When compared with the DNA-A sequences of other begomoviruses, the complete nucleotide sequence of DNA-A of G10 had the highest sequence identity (81.2%) to tomato leaf curl Guangdong virus (ToLCGuV) isolate G2. This is less than the 89% identity in the complete genome that has been defined as the threshold value for demarcation of species in the genus Begomovirus. The molecular data show that isolate G10 from allamanda in Guangdong, China is a distinct Begomovirus species, for which the name Allamanda leaf curl virus (AlLCV) is proposed.</abstract><cop>Vienna</cop><pub>Vienna : Springer Vienna</pub><pmid>19609637</pmid><doi>10.1007/s00705-009-0445-2</doi><tpages>4</tpages></addata></record> |
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| subjects | Allamanda Amino acids Apocynaceae - virology Base Sequence Begomovirus Begomovirus - classification Begomovirus - genetics Biological and medical sciences Biomedical and Life Sciences Biomedicine Brief Review China Cloning Disease DNA, Viral - genetics Fundamental and applied biological sciences. Psychology Genomes Infectious Diseases Lycopersicon esculentum Medical Microbiology Microbiology Miscellaneous Molecular Sequence Data Phylogeny Phytopathology. Animal pests. Plant and forest protection Plant Diseases - virology Plant viruses and viroids Sequence Homology, Nucleic Acid Virology Viruses |
| title | Molecular characterization of a distinct begomovirus infecting Allamanda cathartica in Guangdong, China |
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