BIOGEOGRAPHIC ANALYSIS OF THE GLOBALLY DISTRIBUTED HARMFUL ALGAL BLOOM SPECIES ALEXANDRIUM MINUTUM (DINOPHYCEAE) BASED ON rRNA GENE SEQUENCES AND MICROSATELLITE MARKERS
The toxic dinoflagellate Alexandrium minutum Halim is one of three species that comprise the "minutum" species complex. This complex is notable due to its role in the etiology of paralytic shellfish poisoning (PSP). Recent increases in PSP incidence and the geographic expansion of toxin-pr...
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description | The toxic dinoflagellate Alexandrium minutum Halim is one of three species that comprise the "minutum" species complex. This complex is notable due to its role in the etiology of paralytic shellfish poisoning (PSP). Recent increases in PSP incidence and the geographic expansion of toxin-producing Alexandrium dinoflagellates have prompted the intensive examination of genetic relationships among globally distributed strains to address questions regarding their present distribution and reasons for their apparent increase. The biogeography of A. minutum was studied using large subunit ribosomal DNA gene (LSU rRNA) and internal transcribed spacer (ITS) sequences and genotypic data from 12 microsatellite loci. rRNA gene and ITS sequencing data distinguished between two clades, herein termed the "Global" and the "Pacific"; however, little to no resolution was seen within each clade. Genotypic data from 12 microsatellite loci provided additional information regarding genetic relationships within the Global clade, but it was not possible to amplify DNA from the Pacific clade using these markers. With the exception of isolates from Italy and Spain, strains generally clustered according to origin, revealing geographic structuring within the Global clade. Additionally, no evidence supported the separation of A. lusitanicum and A. minutum as different species. With the use of microsatellites, it is now possible to initiate studies on the origin, history, and genetic heterogeneity of A. minutum that were not previously possible using only rRNA gene sequence data. This study demonstrates the power of combining a marker with intermediate resolution (rRNA sequences) with finer-scale markers (microsatellites) to examine intraspecies variability among globally distributed isolates and represents the first effort to employ this technique in A. minutum. |
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This complex is notable due to its role in the etiology of paralytic shellfish poisoning (PSP). Recent increases in PSP incidence and the geographic expansion of toxin-producing Alexandrium dinoflagellates have prompted the intensive examination of genetic relationships among globally distributed strains to address questions regarding their present distribution and reasons for their apparent increase. The biogeography of A. minutum was studied using large subunit ribosomal DNA gene (LSU rRNA) and internal transcribed spacer (ITS) sequences and genotypic data from 12 microsatellite loci. rRNA gene and ITS sequencing data distinguished between two clades, herein termed the "Global" and the "Pacific"; however, little to no resolution was seen within each clade. Genotypic data from 12 microsatellite loci provided additional information regarding genetic relationships within the Global clade, but it was not possible to amplify DNA from the Pacific clade using these markers. With the exception of isolates from Italy and Spain, strains generally clustered according to origin, revealing geographic structuring within the Global clade. Additionally, no evidence supported the separation of A. lusitanicum and A. minutum as different species. With the use of microsatellites, it is now possible to initiate studies on the origin, history, and genetic heterogeneity of A. minutum that were not previously possible using only rRNA gene sequence data. This study demonstrates the power of combining a marker with intermediate resolution (rRNA sequences) with finer-scale markers (microsatellites) to examine intraspecies variability among globally distributed isolates and represents the first effort to employ this technique in A. minutum.</description><identifier>ISSN: 0022-3646</identifier><identifier>EISSN: 1529-8817</identifier><identifier>DOI: 10.1111/j.1529-8817.2009.00650.x</identifier><identifier>PMID: 27033824</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>A. lusitanicum ; A. minutum ; Alexandrium minutum ; biogeography ; Dinophyceae ; genotype ; harmful algal blooms ; LSU rRNA ; Marine ; microsatellite repeats ; microsatellites ; phylogeny</subject><ispartof>Journal of phycology, 2009-04, Vol.45 (2), p.454-463</ispartof><rights>2009 Phycological Society of America.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27033824$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>McCauley, Linda A.R</creatorcontrib><creatorcontrib>Erdner, Deana L</creatorcontrib><creatorcontrib>Nagai, Satoshi</creatorcontrib><creatorcontrib>Richlen, Mindy L</creatorcontrib><creatorcontrib>Anderson, Donald M</creatorcontrib><title>BIOGEOGRAPHIC ANALYSIS OF THE GLOBALLY DISTRIBUTED HARMFUL ALGAL BLOOM SPECIES ALEXANDRIUM MINUTUM (DINOPHYCEAE) BASED ON rRNA GENE SEQUENCES AND MICROSATELLITE MARKERS</title><title>Journal of phycology</title><addtitle>J Phycol</addtitle><description>The toxic dinoflagellate Alexandrium minutum Halim is one of three species that comprise the "minutum" species complex. This complex is notable due to its role in the etiology of paralytic shellfish poisoning (PSP). Recent increases in PSP incidence and the geographic expansion of toxin-producing Alexandrium dinoflagellates have prompted the intensive examination of genetic relationships among globally distributed strains to address questions regarding their present distribution and reasons for their apparent increase. The biogeography of A. minutum was studied using large subunit ribosomal DNA gene (LSU rRNA) and internal transcribed spacer (ITS) sequences and genotypic data from 12 microsatellite loci. rRNA gene and ITS sequencing data distinguished between two clades, herein termed the "Global" and the "Pacific"; however, little to no resolution was seen within each clade. Genotypic data from 12 microsatellite loci provided additional information regarding genetic relationships within the Global clade, but it was not possible to amplify DNA from the Pacific clade using these markers. With the exception of isolates from Italy and Spain, strains generally clustered according to origin, revealing geographic structuring within the Global clade. Additionally, no evidence supported the separation of A. lusitanicum and A. minutum as different species. With the use of microsatellites, it is now possible to initiate studies on the origin, history, and genetic heterogeneity of A. minutum that were not previously possible using only rRNA gene sequence data. This study demonstrates the power of combining a marker with intermediate resolution (rRNA sequences) with finer-scale markers (microsatellites) to examine intraspecies variability among globally distributed isolates and represents the first effort to employ this technique in A. minutum.</description><subject>A. lusitanicum</subject><subject>A. minutum</subject><subject>Alexandrium minutum</subject><subject>biogeography</subject><subject>Dinophyceae</subject><subject>genotype</subject><subject>harmful algal blooms</subject><subject>LSU rRNA</subject><subject>Marine</subject><subject>microsatellite repeats</subject><subject>microsatellites</subject><subject>phylogeny</subject><issn>0022-3646</issn><issn>1529-8817</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNp9kc2O0zAUhSMEYsrAK4BXaFikXNuJnSydxE0s3KTNj5iyidL8oM60dEhaaXgjHhOjDrPkbo50z3eOdHUtC2GYYzOf7-bYJb7teZjPCYA_B2AuzB9fWLNn46U1AyDEpsxhV9ababoDAM5c_Nq6Ihwo9Ygzs34HKotlFudilagQiVToTaEKlC1QmUgU6ywQWm9QpIoyV0FVygglIl8uKo2EjoVGgc6yJSpWMlSyMDt5K9IoV9USLVValUZvIpVmq2QTSiE_oUAUpiNL0ZinAsUylaiQ60qm4d94GplYmGeFKKXWqpRoKfIvMi_eWq-GZj_175702qoWsgwTW2exCoW2BwrOyd722w43zHU6t_ebrTmSAx8o7tqGAWspZtDSoSVe33nYc1rgtKMDB-L5tOlbTq-tj5feh_H489xPp_qwm9p-v29-9MfzVBPgDnF9x4A3_wUx5x4HD3ww6Psn9Lw99F39MO4Ozfir_vcGA9gXYDed-sdnvxnva8Ypd-uvaVzfUvptnfB1HRn-w4UfmmPdfB93U10VBDAFzDAzH6d_AGPZlis</recordid><startdate>20090401</startdate><enddate>20090401</enddate><creator>McCauley, Linda A.R</creator><creator>Erdner, Deana L</creator><creator>Nagai, Satoshi</creator><creator>Richlen, Mindy L</creator><creator>Anderson, Donald M</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>NPM</scope><scope>7X8</scope><scope>7TM</scope><scope>7TN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H97</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20090401</creationdate><title>BIOGEOGRAPHIC ANALYSIS OF THE GLOBALLY DISTRIBUTED HARMFUL ALGAL BLOOM SPECIES ALEXANDRIUM MINUTUM (DINOPHYCEAE) BASED ON rRNA GENE SEQUENCES AND MICROSATELLITE MARKERS</title><author>McCauley, Linda A.R ; Erdner, Deana L ; Nagai, Satoshi ; Richlen, Mindy L ; Anderson, Donald M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-f304t-bebd1a654d5e9ab382707f31dca606c3160c3fc28ed8184c073d3f702893aec73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>A. lusitanicum</topic><topic>A. minutum</topic><topic>Alexandrium minutum</topic><topic>biogeography</topic><topic>Dinophyceae</topic><topic>genotype</topic><topic>harmful algal blooms</topic><topic>LSU rRNA</topic><topic>Marine</topic><topic>microsatellite repeats</topic><topic>microsatellites</topic><topic>phylogeny</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>McCauley, Linda A.R</creatorcontrib><creatorcontrib>Erdner, Deana L</creatorcontrib><creatorcontrib>Nagai, Satoshi</creatorcontrib><creatorcontrib>Richlen, Mindy L</creatorcontrib><creatorcontrib>Anderson, Donald M</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of phycology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>McCauley, Linda A.R</au><au>Erdner, Deana L</au><au>Nagai, Satoshi</au><au>Richlen, Mindy L</au><au>Anderson, Donald M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>BIOGEOGRAPHIC ANALYSIS OF THE GLOBALLY DISTRIBUTED HARMFUL ALGAL BLOOM SPECIES ALEXANDRIUM MINUTUM (DINOPHYCEAE) BASED ON rRNA GENE SEQUENCES AND MICROSATELLITE MARKERS</atitle><jtitle>Journal of phycology</jtitle><addtitle>J Phycol</addtitle><date>2009-04-01</date><risdate>2009</risdate><volume>45</volume><issue>2</issue><spage>454</spage><epage>463</epage><pages>454-463</pages><issn>0022-3646</issn><eissn>1529-8817</eissn><abstract>The toxic dinoflagellate Alexandrium minutum Halim is one of three species that comprise the "minutum" species complex. This complex is notable due to its role in the etiology of paralytic shellfish poisoning (PSP). Recent increases in PSP incidence and the geographic expansion of toxin-producing Alexandrium dinoflagellates have prompted the intensive examination of genetic relationships among globally distributed strains to address questions regarding their present distribution and reasons for their apparent increase. The biogeography of A. minutum was studied using large subunit ribosomal DNA gene (LSU rRNA) and internal transcribed spacer (ITS) sequences and genotypic data from 12 microsatellite loci. rRNA gene and ITS sequencing data distinguished between two clades, herein termed the "Global" and the "Pacific"; however, little to no resolution was seen within each clade. Genotypic data from 12 microsatellite loci provided additional information regarding genetic relationships within the Global clade, but it was not possible to amplify DNA from the Pacific clade using these markers. With the exception of isolates from Italy and Spain, strains generally clustered according to origin, revealing geographic structuring within the Global clade. Additionally, no evidence supported the separation of A. lusitanicum and A. minutum as different species. With the use of microsatellites, it is now possible to initiate studies on the origin, history, and genetic heterogeneity of A. minutum that were not previously possible using only rRNA gene sequence data. This study demonstrates the power of combining a marker with intermediate resolution (rRNA sequences) with finer-scale markers (microsatellites) to examine intraspecies variability among globally distributed isolates and represents the first effort to employ this technique in A. minutum.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>27033824</pmid><doi>10.1111/j.1529-8817.2009.00650.x</doi><tpages>10</tpages></addata></record> |
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subjects | A. lusitanicum A. minutum Alexandrium minutum biogeography Dinophyceae genotype harmful algal blooms LSU rRNA Marine microsatellite repeats microsatellites phylogeny |
title | BIOGEOGRAPHIC ANALYSIS OF THE GLOBALLY DISTRIBUTED HARMFUL ALGAL BLOOM SPECIES ALEXANDRIUM MINUTUM (DINOPHYCEAE) BASED ON rRNA GENE SEQUENCES AND MICROSATELLITE MARKERS |
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