The diversity of venom components of the scorpion species Paravaejovis schwenkmeyeri (Scorpiones: Vaejovidae) revealed by transcriptome and proteome analyses
The recent publication of high-throughput transcriptomic and proteomic analyses of scorpion venom glands has increased our knowledge on the biodiversity of venom components. In this contribution, we report the transcriptome of the venom gland and the proteome of the venom for the scorpion species Pa...
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Veröffentlicht in: | Toxicon (Oxford) 2018-09, Vol.151, p.47-62 |
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creator | Cid-Uribe, Jimena I. Santibáñez-López, Carlos E. Meneses, Erika P. Batista, Cesar V.F. Jiménez-Vargas, Juana M. Ortiz, Ernesto Possani, Lourival D. |
description | The recent publication of high-throughput transcriptomic and proteomic analyses of scorpion venom glands has increased our knowledge on the biodiversity of venom components. In this contribution, we report the transcriptome of the venom gland and the proteome of the venom for the scorpion species Paravaejovis schwenkmeyeri, a member of the family Vaejovidae. We report 138 annotated transcripts encoding putative peptides/proteins with sequence identity to known venom components available from different databases. A fingerprint analysis containing the molecular masses of 212 components of the whole soluble venom revealed molecular weights of approximately 700 to 13,800 Da, with most detected proteins ranging from 1500 to 3000 Da. Amino acid sequencing of venom components by LC-MS/MS allowed the identification of fragments from 27 peptides encoded by transcripts found in the transcriptome analysis. Enzymatic assays conducted with the soluble venom fraction confirmed the presence of enzymes such as hyaluronidases and phospholipases. The database presented here increases our general knowledge on the biodiversity of venom components from neglected non-buthid scorpions.
•The transcriptome of the venom gland from Paravaejovis schwenkmeyeri was sequenced.•A complete proteome analysis of the Paravaejovis schwenkmeyeri venom was performed.•High-throughput RNAseq and LC-MS/MS technologies were employed.•A total of 138 transcripts encoding putative venom peptides were annotated.•The presence in the venom of the peptides encoded by 27 transcripts was confirmed. |
doi_str_mv | 10.1016/j.toxicon.2018.06.085 |
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•The transcriptome of the venom gland from Paravaejovis schwenkmeyeri was sequenced.•A complete proteome analysis of the Paravaejovis schwenkmeyeri venom was performed.•High-throughput RNAseq and LC-MS/MS technologies were employed.•A total of 138 transcripts encoding putative venom peptides were annotated.•The presence in the venom of the peptides encoded by 27 transcripts was confirmed.</description><identifier>ISSN: 0041-0101</identifier><identifier>EISSN: 1879-3150</identifier><identifier>DOI: 10.1016/j.toxicon.2018.06.085</identifier><identifier>PMID: 29964058</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Amino Acid Sequence ; Animals ; Arthropod Proteins - chemistry ; Arthropod Proteins - genetics ; Arthropod Proteins - metabolism ; Computational Biology ; Ion Channels - antagonists & inhibitors ; Paravaejovis schwenkmeyeri ; Proteome ; Scorpion ; Scorpion Venoms - chemistry ; Scorpions - physiology ; Toxins, Biological - chemistry ; Toxins, Biological - genetics ; Toxins, Biological - metabolism ; Transcriptome ; Venom</subject><ispartof>Toxicon (Oxford), 2018-09, Vol.151, p.47-62</ispartof><rights>2018 Elsevier Ltd</rights><rights>Copyright © 2018 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c365t-84e0d8b86d16632c7fe73acb79fa02e6e51f9ff32854939fa5fa35f94698a9ef3</citedby><cites>FETCH-LOGICAL-c365t-84e0d8b86d16632c7fe73acb79fa02e6e51f9ff32854939fa5fa35f94698a9ef3</cites><orcidid>0000-0001-6357-2661 ; 0000-0001-6062-282X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.toxicon.2018.06.085$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3549,27923,27924,45994</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29964058$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cid-Uribe, Jimena I.</creatorcontrib><creatorcontrib>Santibáñez-López, Carlos E.</creatorcontrib><creatorcontrib>Meneses, Erika P.</creatorcontrib><creatorcontrib>Batista, Cesar V.F.</creatorcontrib><creatorcontrib>Jiménez-Vargas, Juana M.</creatorcontrib><creatorcontrib>Ortiz, Ernesto</creatorcontrib><creatorcontrib>Possani, Lourival D.</creatorcontrib><title>The diversity of venom components of the scorpion species Paravaejovis schwenkmeyeri (Scorpiones: Vaejovidae) revealed by transcriptome and proteome analyses</title><title>Toxicon (Oxford)</title><addtitle>Toxicon</addtitle><description>The recent publication of high-throughput transcriptomic and proteomic analyses of scorpion venom glands has increased our knowledge on the biodiversity of venom components. In this contribution, we report the transcriptome of the venom gland and the proteome of the venom for the scorpion species Paravaejovis schwenkmeyeri, a member of the family Vaejovidae. We report 138 annotated transcripts encoding putative peptides/proteins with sequence identity to known venom components available from different databases. A fingerprint analysis containing the molecular masses of 212 components of the whole soluble venom revealed molecular weights of approximately 700 to 13,800 Da, with most detected proteins ranging from 1500 to 3000 Da. Amino acid sequencing of venom components by LC-MS/MS allowed the identification of fragments from 27 peptides encoded by transcripts found in the transcriptome analysis. Enzymatic assays conducted with the soluble venom fraction confirmed the presence of enzymes such as hyaluronidases and phospholipases. The database presented here increases our general knowledge on the biodiversity of venom components from neglected non-buthid scorpions.
•The transcriptome of the venom gland from Paravaejovis schwenkmeyeri was sequenced.•A complete proteome analysis of the Paravaejovis schwenkmeyeri venom was performed.•High-throughput RNAseq and LC-MS/MS technologies were employed.•A total of 138 transcripts encoding putative venom peptides were annotated.•The presence in the venom of the peptides encoded by 27 transcripts was confirmed.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Arthropod Proteins - chemistry</subject><subject>Arthropod Proteins - genetics</subject><subject>Arthropod Proteins - metabolism</subject><subject>Computational Biology</subject><subject>Ion Channels - antagonists & inhibitors</subject><subject>Paravaejovis schwenkmeyeri</subject><subject>Proteome</subject><subject>Scorpion</subject><subject>Scorpion Venoms - chemistry</subject><subject>Scorpions - physiology</subject><subject>Toxins, Biological - chemistry</subject><subject>Toxins, Biological - genetics</subject><subject>Toxins, Biological - metabolism</subject><subject>Transcriptome</subject><subject>Venom</subject><issn>0041-0101</issn><issn>1879-3150</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkd2O1SAQgBujcY-rj6Dhcr1ohVIoeGM2G_-STTRx9ZZw6JDl2EIFTrUP47vKSY_eekWY-YaZ4auq5wQ3BBP-6tDk8MuZ4JsWE9Fg3mDBHlQ7InpZU8Lww2qHcUdqXPCL6klKB4wxFZI_ri5aKXmHmdhVv-_uAQ1ugZhcXlGwaAEfJmTCNAcPPqdTLBcomRBnFzxKMxgHCX3WUS8aDmFxqWTvf4L_PsEK0aGrL2cY0mv0bWMGDS9RhAX0CAParyhH7ZOJbs5hAqT9gOYYMmwXPa4J0tPqkdVjgmfn87L6-u7t3c2H-vbT-48317e1oZzlWnSAB7EXfCCc09b0Fnqqzb6XVuMWODBipbW0FayTtASZ1ZRZ2XEptARLL6ur7d0ywY8jpKwmlwyMo_YQjkm1mNOe0LZlBWUbamJIKYJVc3STjqsiWJ3MqIM6m1EnMwpzVcyUuhfnFsf9BMO_qr8qCvBmA6AsujiIKpVv9gYGF8FkNQT3nxZ_AMmKp0k</recordid><startdate>20180901</startdate><enddate>20180901</enddate><creator>Cid-Uribe, Jimena I.</creator><creator>Santibáñez-López, Carlos E.</creator><creator>Meneses, Erika P.</creator><creator>Batista, Cesar V.F.</creator><creator>Jiménez-Vargas, Juana M.</creator><creator>Ortiz, Ernesto</creator><creator>Possani, Lourival D.</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6357-2661</orcidid><orcidid>https://orcid.org/0000-0001-6062-282X</orcidid></search><sort><creationdate>20180901</creationdate><title>The diversity of venom components of the scorpion species Paravaejovis schwenkmeyeri (Scorpiones: Vaejovidae) revealed by transcriptome and proteome analyses</title><author>Cid-Uribe, Jimena I. ; Santibáñez-López, Carlos E. ; Meneses, Erika P. ; Batista, Cesar V.F. ; Jiménez-Vargas, Juana M. ; Ortiz, Ernesto ; Possani, Lourival D.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c365t-84e0d8b86d16632c7fe73acb79fa02e6e51f9ff32854939fa5fa35f94698a9ef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Arthropod Proteins - chemistry</topic><topic>Arthropod Proteins - genetics</topic><topic>Arthropod Proteins - metabolism</topic><topic>Computational Biology</topic><topic>Ion Channels - antagonists & inhibitors</topic><topic>Paravaejovis schwenkmeyeri</topic><topic>Proteome</topic><topic>Scorpion</topic><topic>Scorpion Venoms - chemistry</topic><topic>Scorpions - physiology</topic><topic>Toxins, Biological - chemistry</topic><topic>Toxins, Biological - genetics</topic><topic>Toxins, Biological - metabolism</topic><topic>Transcriptome</topic><topic>Venom</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cid-Uribe, Jimena I.</creatorcontrib><creatorcontrib>Santibáñez-López, Carlos E.</creatorcontrib><creatorcontrib>Meneses, Erika P.</creatorcontrib><creatorcontrib>Batista, Cesar V.F.</creatorcontrib><creatorcontrib>Jiménez-Vargas, Juana M.</creatorcontrib><creatorcontrib>Ortiz, Ernesto</creatorcontrib><creatorcontrib>Possani, Lourival D.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Toxicon (Oxford)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cid-Uribe, Jimena I.</au><au>Santibáñez-López, Carlos E.</au><au>Meneses, Erika P.</au><au>Batista, Cesar V.F.</au><au>Jiménez-Vargas, Juana M.</au><au>Ortiz, Ernesto</au><au>Possani, Lourival D.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The diversity of venom components of the scorpion species Paravaejovis schwenkmeyeri (Scorpiones: Vaejovidae) revealed by transcriptome and proteome analyses</atitle><jtitle>Toxicon (Oxford)</jtitle><addtitle>Toxicon</addtitle><date>2018-09-01</date><risdate>2018</risdate><volume>151</volume><spage>47</spage><epage>62</epage><pages>47-62</pages><issn>0041-0101</issn><eissn>1879-3150</eissn><abstract>The recent publication of high-throughput transcriptomic and proteomic analyses of scorpion venom glands has increased our knowledge on the biodiversity of venom components. In this contribution, we report the transcriptome of the venom gland and the proteome of the venom for the scorpion species Paravaejovis schwenkmeyeri, a member of the family Vaejovidae. We report 138 annotated transcripts encoding putative peptides/proteins with sequence identity to known venom components available from different databases. A fingerprint analysis containing the molecular masses of 212 components of the whole soluble venom revealed molecular weights of approximately 700 to 13,800 Da, with most detected proteins ranging from 1500 to 3000 Da. Amino acid sequencing of venom components by LC-MS/MS allowed the identification of fragments from 27 peptides encoded by transcripts found in the transcriptome analysis. Enzymatic assays conducted with the soluble venom fraction confirmed the presence of enzymes such as hyaluronidases and phospholipases. The database presented here increases our general knowledge on the biodiversity of venom components from neglected non-buthid scorpions.
•The transcriptome of the venom gland from Paravaejovis schwenkmeyeri was sequenced.•A complete proteome analysis of the Paravaejovis schwenkmeyeri venom was performed.•High-throughput RNAseq and LC-MS/MS technologies were employed.•A total of 138 transcripts encoding putative venom peptides were annotated.•The presence in the venom of the peptides encoded by 27 transcripts was confirmed.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>29964058</pmid><doi>10.1016/j.toxicon.2018.06.085</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0001-6357-2661</orcidid><orcidid>https://orcid.org/0000-0001-6062-282X</orcidid></addata></record> |
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subjects | Amino Acid Sequence Animals Arthropod Proteins - chemistry Arthropod Proteins - genetics Arthropod Proteins - metabolism Computational Biology Ion Channels - antagonists & inhibitors Paravaejovis schwenkmeyeri Proteome Scorpion Scorpion Venoms - chemistry Scorpions - physiology Toxins, Biological - chemistry Toxins, Biological - genetics Toxins, Biological - metabolism Transcriptome Venom |
title | The diversity of venom components of the scorpion species Paravaejovis schwenkmeyeri (Scorpiones: Vaejovidae) revealed by transcriptome and proteome analyses |
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