Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions
Gevuina avellana(Proteaceae) is a typical tree from the South American temperate rainforest. Although this species mostly regenerates in shaded understories, it exhibits an exceptional ecological breadth, being able to live under a wide range of light conditions. Here we studied the genetic basis th...
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Veröffentlicht in: | The New phytologist 2018-10, Vol.220 (1), p.278-287 |
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creator | Ostria‐Gallardo, Enrique Ranjan, Aashish Ichihashi, Yasunori Corcuera, Luis J. Sinha, Neelima R. |
description | Gevuina avellana(Proteaceae) is a typical tree from the South American temperate rainforest. Although this species mostly regenerates in shaded understories, it exhibits an exceptional ecological breadth, being able to live under a wide range of light conditions. Here we studied the genetic basis that underlies physiological acclimation of the photosynthetic responses of G. avellana under contrasting light conditions.
We analyzed carbon assimilation and light energy used for photochemical processes in plants acclimated to contrasting light conditions. Also, we used a transcriptional profile of leaf primordia from G. avellana saplings growing under different light environments in their natural habitat, to identify the gene coexpression network underpinning photosynthetic performance and light-related processes.
The photosynthetic parameters revealed optimal performance regardless of light conditions. Strikingly, the mechanism involved in dissipation of excess light energy showed no significant differences between high- and low-light-acclimated plants. The gene coexpression network defined a community structure consistent with the photochemical responses, including genes involved mainly in assembly and functioning of photosystems, photoprotection, and retrograde signaling.
This ecophysiological genomics approach improves our understanding of the intraspecific variability that allows G. avellana to have optimal photochemical and photoprotective mechanisms in the diverse light habitats it encounters in nature. |
doi_str_mv | 10.1111/nph.15278 |
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We analyzed carbon assimilation and light energy used for photochemical processes in plants acclimated to contrasting light conditions. Also, we used a transcriptional profile of leaf primordia from G. avellana saplings growing under different light environments in their natural habitat, to identify the gene coexpression network underpinning photosynthetic performance and light-related processes.
The photosynthetic parameters revealed optimal performance regardless of light conditions. Strikingly, the mechanism involved in dissipation of excess light energy showed no significant differences between high- and low-light-acclimated plants. The gene coexpression network defined a community structure consistent with the photochemical responses, including genes involved mainly in assembly and functioning of photosystems, photoprotection, and retrograde signaling.
This ecophysiological genomics approach improves our understanding of the intraspecific variability that allows G. avellana to have optimal photochemical and photoprotective mechanisms in the diverse light habitats it encounters in nature.</description><identifier>ISSN: 0028-646X</identifier><identifier>EISSN: 1469-8137</identifier><identifier>DOI: 10.1111/nph.15278</identifier><identifier>PMID: 29956327</identifier><language>eng</language><publisher>England: New Phytologist Trust</publisher><subject>Acclimation ; Acclimatization ; Carbon fixation ; Community structure ; Decoding ; Ecophysiology ; Energy ; gene coexpression network ; Genes ; Genomics ; Gevuina avellana ; Glaucoma avellana ; Light ; light acclimation ; Photochemicals ; Photochemistry ; Photosynthesis ; Photosystems ; Primordia ; Process parameters ; Rainforests ; Retrograde transport ; temperate rainforest ; Transcription</subject><ispartof>The New phytologist, 2018-10, Vol.220 (1), p.278-287</ispartof><rights>2018 New Phytologist Trust</rights><rights>2018 The Authors. New Phytologist © 2018 New Phytologist Trust</rights><rights>2018 The Authors. New Phytologist © 2018 New Phytologist Trust.</rights><rights>Copyright © 2018 New Phytologist Trust</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4768-68d3e6c0800108c7e8c4cab782142c439671ba6636adcda5427b6930bb0723963</citedby><cites>FETCH-LOGICAL-c4768-68d3e6c0800108c7e8c4cab782142c439671ba6636adcda5427b6930bb0723963</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/90024551$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/90024551$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,1411,1427,27901,27902,45550,45551,46384,46808,57992,58225</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29956327$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ostria‐Gallardo, Enrique</creatorcontrib><creatorcontrib>Ranjan, Aashish</creatorcontrib><creatorcontrib>Ichihashi, Yasunori</creatorcontrib><creatorcontrib>Corcuera, Luis J.</creatorcontrib><creatorcontrib>Sinha, Neelima R.</creatorcontrib><title>Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions</title><title>The New phytologist</title><addtitle>New Phytol</addtitle><description>Gevuina avellana(Proteaceae) is a typical tree from the South American temperate rainforest. Although this species mostly regenerates in shaded understories, it exhibits an exceptional ecological breadth, being able to live under a wide range of light conditions. Here we studied the genetic basis that underlies physiological acclimation of the photosynthetic responses of G. avellana under contrasting light conditions.
We analyzed carbon assimilation and light energy used for photochemical processes in plants acclimated to contrasting light conditions. Also, we used a transcriptional profile of leaf primordia from G. avellana saplings growing under different light environments in their natural habitat, to identify the gene coexpression network underpinning photosynthetic performance and light-related processes.
The photosynthetic parameters revealed optimal performance regardless of light conditions. Strikingly, the mechanism involved in dissipation of excess light energy showed no significant differences between high- and low-light-acclimated plants. The gene coexpression network defined a community structure consistent with the photochemical responses, including genes involved mainly in assembly and functioning of photosystems, photoprotection, and retrograde signaling.
This ecophysiological genomics approach improves our understanding of the intraspecific variability that allows G. avellana to have optimal photochemical and photoprotective mechanisms in the diverse light habitats it encounters in nature.</description><subject>Acclimation</subject><subject>Acclimatization</subject><subject>Carbon fixation</subject><subject>Community structure</subject><subject>Decoding</subject><subject>Ecophysiology</subject><subject>Energy</subject><subject>gene coexpression network</subject><subject>Genes</subject><subject>Genomics</subject><subject>Gevuina avellana</subject><subject>Glaucoma avellana</subject><subject>Light</subject><subject>light acclimation</subject><subject>Photochemicals</subject><subject>Photochemistry</subject><subject>Photosynthesis</subject><subject>Photosystems</subject><subject>Primordia</subject><subject>Process parameters</subject><subject>Rainforests</subject><subject>Retrograde transport</subject><subject>temperate rainforest</subject><subject>Transcription</subject><issn>0028-646X</issn><issn>1469-8137</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp1kU9PGzEQxa2qqATaQz8AlaVe4BDwn13be6wCBSREe2il3lZe7yRx2NjB3g3k2zMlhAMSc5kZ-TdPT36EfOXslGOdhdX8lJdCmw9kxAtVjQ2X-iMZMSbMWBXq3z45yHnBGKtKJT6RfVHhIIUekeEcXGx9mNF-DnQGAaiL8LhKkLOPgQboH2K6o0NoIXWbHWgb3_l-Q-OUXsJ68MFSu4auszj0kXZ-DdQH2mJPGXCfzXsUDq3vUTV_JntT22X48tIPyd-fF38mV-ObX5fXkx83Y1dohdZNK0E5ZhjjzDgNxhXONtoIXghXyEpp3lilpLKta21ZCN2oSrKmYVrgqzwkx1vdVYr3A-S-Xvrsnn1CHHItmBJGYhlEv79BF3FIAd0hVZUc_TCN1MmWcinmnGBar5Jf2rSpOav_Z1FjFvVzFsh-e1EcmiW0r-Tu8xE42wIPvoPN-0r17e-rneTR9mKR-5heLyoMuihLLp8AIpadEg</recordid><startdate>201810</startdate><enddate>201810</enddate><creator>Ostria‐Gallardo, Enrique</creator><creator>Ranjan, Aashish</creator><creator>Ichihashi, Yasunori</creator><creator>Corcuera, Luis J.</creator><creator>Sinha, Neelima R.</creator><general>New Phytologist Trust</general><general>Wiley Subscription Services, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201810</creationdate><title>Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions</title><author>Ostria‐Gallardo, Enrique ; Ranjan, Aashish ; Ichihashi, Yasunori ; Corcuera, Luis J. ; Sinha, Neelima R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4768-68d3e6c0800108c7e8c4cab782142c439671ba6636adcda5427b6930bb0723963</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Acclimation</topic><topic>Acclimatization</topic><topic>Carbon fixation</topic><topic>Community structure</topic><topic>Decoding</topic><topic>Ecophysiology</topic><topic>Energy</topic><topic>gene coexpression network</topic><topic>Genes</topic><topic>Genomics</topic><topic>Gevuina avellana</topic><topic>Glaucoma avellana</topic><topic>Light</topic><topic>light acclimation</topic><topic>Photochemicals</topic><topic>Photochemistry</topic><topic>Photosynthesis</topic><topic>Photosystems</topic><topic>Primordia</topic><topic>Process parameters</topic><topic>Rainforests</topic><topic>Retrograde transport</topic><topic>temperate rainforest</topic><topic>Transcription</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ostria‐Gallardo, Enrique</creatorcontrib><creatorcontrib>Ranjan, Aashish</creatorcontrib><creatorcontrib>Ichihashi, Yasunori</creatorcontrib><creatorcontrib>Corcuera, Luis J.</creatorcontrib><creatorcontrib>Sinha, Neelima R.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The New phytologist</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ostria‐Gallardo, Enrique</au><au>Ranjan, Aashish</au><au>Ichihashi, Yasunori</au><au>Corcuera, Luis J.</au><au>Sinha, Neelima R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions</atitle><jtitle>The New phytologist</jtitle><addtitle>New Phytol</addtitle><date>2018-10</date><risdate>2018</risdate><volume>220</volume><issue>1</issue><spage>278</spage><epage>287</epage><pages>278-287</pages><issn>0028-646X</issn><eissn>1469-8137</eissn><abstract>Gevuina avellana(Proteaceae) is a typical tree from the South American temperate rainforest. Although this species mostly regenerates in shaded understories, it exhibits an exceptional ecological breadth, being able to live under a wide range of light conditions. Here we studied the genetic basis that underlies physiological acclimation of the photosynthetic responses of G. avellana under contrasting light conditions.
We analyzed carbon assimilation and light energy used for photochemical processes in plants acclimated to contrasting light conditions. Also, we used a transcriptional profile of leaf primordia from G. avellana saplings growing under different light environments in their natural habitat, to identify the gene coexpression network underpinning photosynthetic performance and light-related processes.
The photosynthetic parameters revealed optimal performance regardless of light conditions. Strikingly, the mechanism involved in dissipation of excess light energy showed no significant differences between high- and low-light-acclimated plants. The gene coexpression network defined a community structure consistent with the photochemical responses, including genes involved mainly in assembly and functioning of photosystems, photoprotection, and retrograde signaling.
This ecophysiological genomics approach improves our understanding of the intraspecific variability that allows G. avellana to have optimal photochemical and photoprotective mechanisms in the diverse light habitats it encounters in nature.</abstract><cop>England</cop><pub>New Phytologist Trust</pub><pmid>29956327</pmid><doi>10.1111/nph.15278</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Acclimation Acclimatization Carbon fixation Community structure Decoding Ecophysiology Energy gene coexpression network Genes Genomics Gevuina avellana Glaucoma avellana Light light acclimation Photochemicals Photochemistry Photosynthesis Photosystems Primordia Process parameters Rainforests Retrograde transport temperate rainforest Transcription |
title | Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions |
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