Population Analysis of Licuala glabra Griff. var. glabra (Palmae) using RAPD Profiling
Random amplified polymorphic DNA (RAPD) profiling revealed genetic diversity among three populations of Licuala glabra var. glabra, an understorey palm growing in the dipterocarp forests of Terengganu, Malaysia. The Bukit Bauk population had individuals without aerial stems. The Bukit Besi individua...
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| Veröffentlicht in: | Annals of botany 1999-10, Vol.84 (4), p.421-427 |
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| creator | LOO, A.H.B. TAN, H.T.W. KUMAR, P.P. SAW, L.G. |
| description | Random amplified polymorphic DNA (RAPD) profiling revealed genetic diversity among three populations of Licuala glabra var. glabra, an understorey palm growing in the dipterocarp forests of Terengganu, Malaysia. The Bukit Bauk population had individuals without aerial stems. The Bukit Besi individuals had stem heights to 30 cm, while those of the Rasau Kerteh population had stems up to 4 m in height. Southern blot analysis confirmed that an apparent monomorphic band generated by the primer OPU-17 among the three different populations corresponds to the same locus. Six primers were used to generate 87 RAPD bands that formed 2-state character raw data for estimating genetic distances using the simple matching coefficient of similarity. The phenogram generated by UPGMA of the RAPD data grouped the individuals from the three populations under three clusters. This was in agreement with the morphological grouping. The infraspecific L. glabra var. selangorensis Becc. was grouped closer to the L. glabra var. glabra individuals than to the outgroup L. scortechinii Becc. Principal component analysis supported the observation from the phenogram. The results show discrete genetic structuring in the populations studied and provide useful information for future conservation measures. |
| doi_str_mv | 10.1006/anbo.1999.0932 |
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The Bukit Bauk population had individuals without aerial stems. The Bukit Besi individuals had stem heights to 30 cm, while those of the Rasau Kerteh population had stems up to 4 m in height. Southern blot analysis confirmed that an apparent monomorphic band generated by the primer OPU-17 among the three different populations corresponds to the same locus. Six primers were used to generate 87 RAPD bands that formed 2-state character raw data for estimating genetic distances using the simple matching coefficient of similarity. The phenogram generated by UPGMA of the RAPD data grouped the individuals from the three populations under three clusters. This was in agreement with the morphological grouping. The infraspecific L. glabra var. selangorensis Becc. was grouped closer to the L. glabra var. glabra individuals than to the outgroup L. scortechinii Becc. Principal component analysis supported the observation from the phenogram. The results show discrete genetic structuring in the populations studied and provide useful information for future conservation measures.</description><identifier>ISSN: 0305-7364</identifier><identifier>EISSN: 1095-8290</identifier><identifier>DOI: 10.1006/anbo.1999.0932</identifier><language>eng</language><publisher>Oxford: Elsevier Science Ltd</publisher><subject>AMOVA ; Arecaceae ; Biodiversity conservation ; conservation ; DNA ; Ecological genetics ; Evolutionary genetics ; genetic distance ; Genetic diversity ; Genetic polymorphism ; genetic techniques and protocols ; Genetic variation ; height ; Licuala ; Licuala glabra Griff. var. glabra ; Licuala glabra Griff. var. glabra, RAPD, palm, AMOVA, population, genetic diversity, conservation ; palm ; phenetics ; plant characteristics ; population ; Population genetics ; Population parameters ; Population structure ; random amplified polymorphic DNA technique ; RAPD ; stems ; understory</subject><ispartof>Annals of botany, 1999-10, Vol.84 (4), p.421-427</ispartof><rights>1999 Annals of Botany Company</rights><rights>Copyright Oxford University Press(England) Oct 1999</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c534t-484de178e64f89bf8846f59cba8abdfe7ed1c6558c51f7a7cac16e8f6ad3f1ad3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/42770540$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/42770540$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,27901,27902,57992,58225</link.rule.ids></links><search><creatorcontrib>LOO, A.H.B.</creatorcontrib><creatorcontrib>TAN, H.T.W.</creatorcontrib><creatorcontrib>KUMAR, P.P.</creatorcontrib><creatorcontrib>SAW, L.G.</creatorcontrib><title>Population Analysis of Licuala glabra Griff. var. glabra (Palmae) using RAPD Profiling</title><title>Annals of botany</title><addtitle>Ann Bot</addtitle><description>Random amplified polymorphic DNA (RAPD) profiling revealed genetic diversity among three populations of Licuala glabra var. glabra, an understorey palm growing in the dipterocarp forests of Terengganu, Malaysia. The Bukit Bauk population had individuals without aerial stems. The Bukit Besi individuals had stem heights to 30 cm, while those of the Rasau Kerteh population had stems up to 4 m in height. Southern blot analysis confirmed that an apparent monomorphic band generated by the primer OPU-17 among the three different populations corresponds to the same locus. Six primers were used to generate 87 RAPD bands that formed 2-state character raw data for estimating genetic distances using the simple matching coefficient of similarity. The phenogram generated by UPGMA of the RAPD data grouped the individuals from the three populations under three clusters. This was in agreement with the morphological grouping. The infraspecific L. glabra var. selangorensis Becc. was grouped closer to the L. glabra var. glabra individuals than to the outgroup L. scortechinii Becc. Principal component analysis supported the observation from the phenogram. The results show discrete genetic structuring in the populations studied and provide useful information for future conservation measures.</description><subject>AMOVA</subject><subject>Arecaceae</subject><subject>Biodiversity conservation</subject><subject>conservation</subject><subject>DNA</subject><subject>Ecological genetics</subject><subject>Evolutionary genetics</subject><subject>genetic distance</subject><subject>Genetic diversity</subject><subject>Genetic polymorphism</subject><subject>genetic techniques and protocols</subject><subject>Genetic variation</subject><subject>height</subject><subject>Licuala</subject><subject>Licuala glabra Griff. var. glabra</subject><subject>Licuala glabra Griff. var. glabra, RAPD, palm, AMOVA, population, genetic diversity, conservation</subject><subject>palm</subject><subject>phenetics</subject><subject>plant characteristics</subject><subject>population</subject><subject>Population genetics</subject><subject>Population parameters</subject><subject>Population structure</subject><subject>random amplified polymorphic DNA technique</subject><subject>RAPD</subject><subject>stems</subject><subject>understory</subject><issn>0305-7364</issn><issn>1095-8290</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><recordid>eNp1kEFv0zAYhiMEEmVw5YawOCB2SLATO7aP1QYdUqVVZZsmLtYXx65c0rizk4n9exyF7YC0iy37e95X9pNl7wkuCMb1V-gbXxApZYFlVb7IFgRLlotS4pfZAleY5byq6evsTYx7jHFZS7LIbjb-OHYwON-jZQ_dQ3QReYvWTo_QAdp10ARAq-CsLdA9hOLx6ssGugOYUzRG1-_Qdrk5R5vgrevS8W32ykIXzbt_-0l2_f3b1dlFvr5c_ThbrnPNKjrkVNDWEC5MTa2QjRWC1pZJ3YCAprWGm5bomjGhGbEcuAZNaiNsDW1lSVpOss9z7zH4u9HEQR1c1KbroDd-jKrElJYpn8BP_4F7P4b04aiIZBMlcIKKGdLBxxiMVcfgDhAeFMFqcqwmx2pyrCbHKfBhDuzj4MMTTUvOMaNTYT7PXRzMn6c5hN-q5hVn6uL2l1rh6vxqe7NVt4n_OPMWvIJdcFFd_ywxqXApGWN8ahQzYZLVe2eCitqZXpvWBaMH1Xr33GP_AqW7pFI</recordid><startdate>19991001</startdate><enddate>19991001</enddate><creator>LOO, A.H.B.</creator><creator>TAN, H.T.W.</creator><creator>KUMAR, P.P.</creator><creator>SAW, L.G.</creator><general>Elsevier Science Ltd</general><general>Oxford University Press</general><general>Academic Press Limited</general><general>Oxford Publishing Limited (England)</general><scope>FBQ</scope><scope>BSCLL</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SN</scope><scope>7T7</scope><scope>7TM</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>19991001</creationdate><title>Population Analysis of Licuala glabra Griff. var. glabra (Palmae) using RAPD Profiling</title><author>LOO, A.H.B. ; TAN, H.T.W. ; KUMAR, P.P. ; SAW, L.G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c534t-484de178e64f89bf8846f59cba8abdfe7ed1c6558c51f7a7cac16e8f6ad3f1ad3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>AMOVA</topic><topic>Arecaceae</topic><topic>Biodiversity conservation</topic><topic>conservation</topic><topic>DNA</topic><topic>Ecological genetics</topic><topic>Evolutionary genetics</topic><topic>genetic distance</topic><topic>Genetic diversity</topic><topic>Genetic polymorphism</topic><topic>genetic techniques and protocols</topic><topic>Genetic variation</topic><topic>height</topic><topic>Licuala</topic><topic>Licuala glabra Griff. var. glabra</topic><topic>Licuala glabra Griff. var. glabra, RAPD, palm, AMOVA, population, genetic diversity, conservation</topic><topic>palm</topic><topic>phenetics</topic><topic>plant characteristics</topic><topic>population</topic><topic>Population genetics</topic><topic>Population parameters</topic><topic>Population structure</topic><topic>random amplified polymorphic DNA technique</topic><topic>RAPD</topic><topic>stems</topic><topic>understory</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>LOO, A.H.B.</creatorcontrib><creatorcontrib>TAN, H.T.W.</creatorcontrib><creatorcontrib>KUMAR, P.P.</creatorcontrib><creatorcontrib>SAW, L.G.</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Annals of botany</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>LOO, A.H.B.</au><au>TAN, H.T.W.</au><au>KUMAR, P.P.</au><au>SAW, L.G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Population Analysis of Licuala glabra Griff. var. glabra (Palmae) using RAPD Profiling</atitle><jtitle>Annals of botany</jtitle><addtitle>Ann Bot</addtitle><date>1999-10-01</date><risdate>1999</risdate><volume>84</volume><issue>4</issue><spage>421</spage><epage>427</epage><pages>421-427</pages><issn>0305-7364</issn><eissn>1095-8290</eissn><abstract>Random amplified polymorphic DNA (RAPD) profiling revealed genetic diversity among three populations of Licuala glabra var. glabra, an understorey palm growing in the dipterocarp forests of Terengganu, Malaysia. The Bukit Bauk population had individuals without aerial stems. The Bukit Besi individuals had stem heights to 30 cm, while those of the Rasau Kerteh population had stems up to 4 m in height. Southern blot analysis confirmed that an apparent monomorphic band generated by the primer OPU-17 among the three different populations corresponds to the same locus. Six primers were used to generate 87 RAPD bands that formed 2-state character raw data for estimating genetic distances using the simple matching coefficient of similarity. The phenogram generated by UPGMA of the RAPD data grouped the individuals from the three populations under three clusters. This was in agreement with the morphological grouping. The infraspecific L. glabra var. selangorensis Becc. was grouped closer to the L. glabra var. glabra individuals than to the outgroup L. scortechinii Becc. Principal component analysis supported the observation from the phenogram. The results show discrete genetic structuring in the populations studied and provide useful information for future conservation measures.</abstract><cop>Oxford</cop><pub>Elsevier Science Ltd</pub><doi>10.1006/anbo.1999.0932</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | AMOVA Arecaceae Biodiversity conservation conservation DNA Ecological genetics Evolutionary genetics genetic distance Genetic diversity Genetic polymorphism genetic techniques and protocols Genetic variation height Licuala Licuala glabra Griff. var. glabra Licuala glabra Griff. var. glabra, RAPD, palm, AMOVA, population, genetic diversity, conservation palm phenetics plant characteristics population Population genetics Population parameters Population structure random amplified polymorphic DNA technique RAPD stems understory |
| title | Population Analysis of Licuala glabra Griff. var. glabra (Palmae) using RAPD Profiling |
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