Marinilactibacillus psychrotolerans gen. nov., sp. nov., a halophilic and alkaliphilic marine lactic acid bacterium isolated from marine organisms in temperate and subtropical areas of Japan
Department of Fermentation Science, Faculty of Applied Bio-Science, Tokyo University of Agriculture, 1-1 Sakuragaoka 1-chome, Setagaya-ku, Tokyo 156-8502, Japan Correspondence Morio Ishikawa mori-01{at}pc4.so-net.ne.jp A novel marine lactic acid rod bacterium has been described for eight strains iso...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2003-05, Vol.53 (3), p.711-720 |
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| creator | Ishikawa, Morio Nakajima, Kazuyuki Yanagi, Miyoko Yamamoto, Yasushi Yamasato, Kazuhide |
| description | Department of Fermentation Science, Faculty of Applied Bio-Science, Tokyo University of Agriculture, 1-1 Sakuragaoka 1-chome, Setagaya-ku, Tokyo 156-8502, Japan
Correspondence Morio Ishikawa mori-01{at}pc4.so-net.ne.jp
A novel marine lactic acid rod bacterium has been described for eight strains isolated from living and decomposing marine organisms collected from temperate and subtropical areas of Japan. The isolates were Gram-positive, catalase-negative, non-sporulating and motile with peritrichous flagella. They were slightly halophilic, highly halotolerant and alkaliphilic; the optimum NaCl concentration for growth was 2·03·75 % (w/v) with a range from 0 to 17·020·5 % (depending on the strain); the optimum pH was between 8·0 and 9·5 with a range from 6·0 to 10·0. They were psychrotolerant, growing well at -1·8 °C with a maximum at 4045 °C and the optimum at 3740 °C. Lactate yields were 87100 % per consumed glucose; the residual products were formate, acetate and ethanol with a molar ratio of approximately 2 : 1 : 1. The product composition was markedly affected by the pH of fermentation medium; at higher pH, the yield of lactate decreased (6065 % at pH 9·0) and that of other products increased conversely. The cell-wall peptidoglycan type was type A4 , Orn- D -Glu, whereas that of the genus Alkalibacterium , the phylogenetically closest lactic acid bacterium, was type A4 , Orn- D -Asp. The major cellular fatty acids were C16 : 0, C16 : 1 9, C18 : 0 and C18 : 1 9 (oleic acid). The G+C content of the DNA was 34·636·2 mol%. The eight isolates were phenotypically homogeneous and formed a single genomic species. The 16S rRNA gene sequence analysis indicated that the isolates constituted an independent phylogenetic lineage within the radiation of lactic acid bacteria with 96·2 % similarity to the genus Alkalibacterium . The secondary structure and the nucleotide sequence of the V6 region of the 16S rRNA were characteristic of the organism among other related lactic acid genera. On the bases of phenotypic and phylogenetic distinctness, the organism was proposed to belong to a new genus and species, Marinilactibacillus psychrotolerans gen. nov., sp. nov. The type strain, M13-2 T (G+C=36·2 mol%), has been deposited in the IAM, NBRC, NCIMB and NRIC culture collections as IAM 14980 T , NBRC 100002 T , NCIMB 13873 T and NRIC 0510 T , respectively.
Published online ahead of print on 1 November 2002 as DOI 10.1099/ijs.0.02446-0.
The DDBJ accession numbers for t |
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Correspondence Morio Ishikawa mori-01{at}pc4.so-net.ne.jp
A novel marine lactic acid rod bacterium has been described for eight strains isolated from living and decomposing marine organisms collected from temperate and subtropical areas of Japan. The isolates were Gram-positive, catalase-negative, non-sporulating and motile with peritrichous flagella. They were slightly halophilic, highly halotolerant and alkaliphilic; the optimum NaCl concentration for growth was 2·03·75 % (w/v) with a range from 0 to 17·020·5 % (depending on the strain); the optimum pH was between 8·0 and 9·5 with a range from 6·0 to 10·0. They were psychrotolerant, growing well at -1·8 °C with a maximum at 4045 °C and the optimum at 3740 °C. Lactate yields were 87100 % per consumed glucose; the residual products were formate, acetate and ethanol with a molar ratio of approximately 2 : 1 : 1. The product composition was markedly affected by the pH of fermentation medium; at higher pH, the yield of lactate decreased (6065 % at pH 9·0) and that of other products increased conversely. The cell-wall peptidoglycan type was type A4 , Orn- D -Glu, whereas that of the genus Alkalibacterium , the phylogenetically closest lactic acid bacterium, was type A4 , Orn- D -Asp. The major cellular fatty acids were C16 : 0, C16 : 1 9, C18 : 0 and C18 : 1 9 (oleic acid). The G+C content of the DNA was 34·636·2 mol%. The eight isolates were phenotypically homogeneous and formed a single genomic species. The 16S rRNA gene sequence analysis indicated that the isolates constituted an independent phylogenetic lineage within the radiation of lactic acid bacteria with 96·2 % similarity to the genus Alkalibacterium . The secondary structure and the nucleotide sequence of the V6 region of the 16S rRNA were characteristic of the organism among other related lactic acid genera. On the bases of phenotypic and phylogenetic distinctness, the organism was proposed to belong to a new genus and species, Marinilactibacillus psychrotolerans gen. nov., sp. nov. The type strain, M13-2 T (G+C=36·2 mol%), has been deposited in the IAM, NBRC, NCIMB and NRIC culture collections as IAM 14980 T , NBRC 100002 T , NCIMB 13873 T and NRIC 0510 T , respectively.
Published online ahead of print on 1 November 2002 as DOI 10.1099/ijs.0.02446-0.
The DDBJ accession numbers for the 16S rRNA gene sequences of strains M13-2 T , M13-3, M13-4, M13-5, M13-6, M13-7, O1-1, O21 and Carnobacterium mobile DSM 4848 T are AB083406 , AB083407 , AB083408 , AB083409 , AB083410 , AB083411 , AB083412 , AB083413 and AB083414 , respectively.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.02446-0</identifier><identifier>PMID: 12807191</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Animals ; Bacteria ; Bacteriology ; Biodegradation, Environmental ; Biological and medical sciences ; Climate ; DNA, Ribosomal - analysis ; Fundamental and applied biological sciences. Psychology ; Hydrogen-Ion Concentration ; Japan ; Lactic acid ; Lactic Acid - metabolism ; Lactobacillaceae - classification ; Lactobacillaceae - genetics ; Lactobacillaceae - isolation & purification ; Marine ; Marine Biology ; Marinilactibacillus psychrotolerans ; Microbiology ; Molecular Sequence Data ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Sequence Analysis, DNA ; Sodium Chloride - metabolism ; Systematics ; Tropical Climate</subject><ispartof>International journal of systematic and evolutionary microbiology, 2003-05, Vol.53 (3), p.711-720</ispartof><rights>2004 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c487t-4d569c63406bc0f279cb6f22174d5e4021ff03317f6fa740aa5ea6d9d35efd163</citedby><cites>FETCH-LOGICAL-c487t-4d569c63406bc0f279cb6f22174d5e4021ff03317f6fa740aa5ea6d9d35efd163</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,3747,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=14805754$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12807191$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ishikawa, Morio</creatorcontrib><creatorcontrib>Nakajima, Kazuyuki</creatorcontrib><creatorcontrib>Yanagi, Miyoko</creatorcontrib><creatorcontrib>Yamamoto, Yasushi</creatorcontrib><creatorcontrib>Yamasato, Kazuhide</creatorcontrib><title>Marinilactibacillus psychrotolerans gen. nov., sp. nov., a halophilic and alkaliphilic marine lactic acid bacterium isolated from marine organisms in temperate and subtropical areas of Japan</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Department of Fermentation Science, Faculty of Applied Bio-Science, Tokyo University of Agriculture, 1-1 Sakuragaoka 1-chome, Setagaya-ku, Tokyo 156-8502, Japan
Correspondence Morio Ishikawa mori-01{at}pc4.so-net.ne.jp
A novel marine lactic acid rod bacterium has been described for eight strains isolated from living and decomposing marine organisms collected from temperate and subtropical areas of Japan. The isolates were Gram-positive, catalase-negative, non-sporulating and motile with peritrichous flagella. They were slightly halophilic, highly halotolerant and alkaliphilic; the optimum NaCl concentration for growth was 2·03·75 % (w/v) with a range from 0 to 17·020·5 % (depending on the strain); the optimum pH was between 8·0 and 9·5 with a range from 6·0 to 10·0. They were psychrotolerant, growing well at -1·8 °C with a maximum at 4045 °C and the optimum at 3740 °C. Lactate yields were 87100 % per consumed glucose; the residual products were formate, acetate and ethanol with a molar ratio of approximately 2 : 1 : 1. The product composition was markedly affected by the pH of fermentation medium; at higher pH, the yield of lactate decreased (6065 % at pH 9·0) and that of other products increased conversely. The cell-wall peptidoglycan type was type A4 , Orn- D -Glu, whereas that of the genus Alkalibacterium , the phylogenetically closest lactic acid bacterium, was type A4 , Orn- D -Asp. The major cellular fatty acids were C16 : 0, C16 : 1 9, C18 : 0 and C18 : 1 9 (oleic acid). The G+C content of the DNA was 34·636·2 mol%. The eight isolates were phenotypically homogeneous and formed a single genomic species. The 16S rRNA gene sequence analysis indicated that the isolates constituted an independent phylogenetic lineage within the radiation of lactic acid bacteria with 96·2 % similarity to the genus Alkalibacterium . The secondary structure and the nucleotide sequence of the V6 region of the 16S rRNA were characteristic of the organism among other related lactic acid genera. On the bases of phenotypic and phylogenetic distinctness, the organism was proposed to belong to a new genus and species, Marinilactibacillus psychrotolerans gen. nov., sp. nov. The type strain, M13-2 T (G+C=36·2 mol%), has been deposited in the IAM, NBRC, NCIMB and NRIC culture collections as IAM 14980 T , NBRC 100002 T , NCIMB 13873 T and NRIC 0510 T , respectively.
Published online ahead of print on 1 November 2002 as DOI 10.1099/ijs.0.02446-0.
The DDBJ accession numbers for the 16S rRNA gene sequences of strains M13-2 T , M13-3, M13-4, M13-5, M13-6, M13-7, O1-1, O21 and Carnobacterium mobile DSM 4848 T are AB083406 , AB083407 , AB083408 , AB083409 , AB083410 , AB083411 , AB083412 , AB083413 and AB083414 , respectively.</description><subject>Animals</subject><subject>Bacteria</subject><subject>Bacteriology</subject><subject>Biodegradation, Environmental</subject><subject>Biological and medical sciences</subject><subject>Climate</subject><subject>DNA, Ribosomal - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Hydrogen-Ion Concentration</subject><subject>Japan</subject><subject>Lactic acid</subject><subject>Lactic Acid - metabolism</subject><subject>Lactobacillaceae - classification</subject><subject>Lactobacillaceae - genetics</subject><subject>Lactobacillaceae - isolation & purification</subject><subject>Marine</subject><subject>Marine Biology</subject><subject>Marinilactibacillus psychrotolerans</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Sequence Analysis, DNA</subject><subject>Sodium Chloride - metabolism</subject><subject>Systematics</subject><subject>Tropical Climate</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkU1v1DAQhiMEoh9w5Ip8AS4kjBPH2RxRBQVUxAXO1sSxN1OcONgJqH-O34Z3N6Unj2YevePRk2UvOBQc2vYd3cYCCiiFkDk8ys65kDKvoRKP_9elPMsuYrwFSA2Ap9kZL3fQ8JafZ3-_YqCJHOqFOtTk3BrZHO_0EPzinQk4RbY3U8Em_7t4y-J8XyEb0Pl5IEea4dQzdD_R0dYYD7GGHXPTWFPPUvxiAq0jo-gdLqZnNvjxHvVhjxPFMTKa2GLGOe1ezDE5rt0S_EwaHcNgMDJv2ReccXqWPbHoonm-vZfZj48fvl99ym--XX--en-Ta7Frllz0tWy1rATIToMtm1Z30pYlb9LECCi5tVBVvLHSYiMAsTYo-7avamN7LqvL7PUpdw7-12riokaK2jiHk_FrVGUSULWiTGB-AnXwMQZj1RwoXXinOKiDMJWEKVBHYQoS_3ILXrvR9A_0ZigBrzYAY7rfJiGa4gMndlA3tUjcmxM30H74Q8GoZG2k9I2O_GFpXalKNZxX_wD7_bBY</recordid><startdate>20030501</startdate><enddate>20030501</enddate><creator>Ishikawa, Morio</creator><creator>Nakajima, Kazuyuki</creator><creator>Yanagi, Miyoko</creator><creator>Yamamoto, Yasushi</creator><creator>Yamasato, Kazuhide</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20030501</creationdate><title>Marinilactibacillus psychrotolerans gen. nov., sp. nov., a halophilic and alkaliphilic marine lactic acid bacterium isolated from marine organisms in temperate and subtropical areas of Japan</title><author>Ishikawa, Morio ; Nakajima, Kazuyuki ; Yanagi, Miyoko ; Yamamoto, Yasushi ; Yamasato, Kazuhide</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c487t-4d569c63406bc0f279cb6f22174d5e4021ff03317f6fa740aa5ea6d9d35efd163</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Animals</topic><topic>Bacteria</topic><topic>Bacteriology</topic><topic>Biodegradation, Environmental</topic><topic>Biological and medical sciences</topic><topic>Climate</topic><topic>DNA, Ribosomal - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Hydrogen-Ion Concentration</topic><topic>Japan</topic><topic>Lactic acid</topic><topic>Lactic Acid - metabolism</topic><topic>Lactobacillaceae - classification</topic><topic>Lactobacillaceae - genetics</topic><topic>Lactobacillaceae - isolation & purification</topic><topic>Marine</topic><topic>Marine Biology</topic><topic>Marinilactibacillus psychrotolerans</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Sequence Analysis, DNA</topic><topic>Sodium Chloride - metabolism</topic><topic>Systematics</topic><topic>Tropical Climate</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ishikawa, Morio</creatorcontrib><creatorcontrib>Nakajima, Kazuyuki</creatorcontrib><creatorcontrib>Yanagi, Miyoko</creatorcontrib><creatorcontrib>Yamamoto, Yasushi</creatorcontrib><creatorcontrib>Yamasato, Kazuhide</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ishikawa, Morio</au><au>Nakajima, Kazuyuki</au><au>Yanagi, Miyoko</au><au>Yamamoto, Yasushi</au><au>Yamasato, Kazuhide</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Marinilactibacillus psychrotolerans gen. nov., sp. nov., a halophilic and alkaliphilic marine lactic acid bacterium isolated from marine organisms in temperate and subtropical areas of Japan</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2003-05-01</date><risdate>2003</risdate><volume>53</volume><issue>3</issue><spage>711</spage><epage>720</epage><pages>711-720</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Department of Fermentation Science, Faculty of Applied Bio-Science, Tokyo University of Agriculture, 1-1 Sakuragaoka 1-chome, Setagaya-ku, Tokyo 156-8502, Japan
Correspondence Morio Ishikawa mori-01{at}pc4.so-net.ne.jp
A novel marine lactic acid rod bacterium has been described for eight strains isolated from living and decomposing marine organisms collected from temperate and subtropical areas of Japan. The isolates were Gram-positive, catalase-negative, non-sporulating and motile with peritrichous flagella. They were slightly halophilic, highly halotolerant and alkaliphilic; the optimum NaCl concentration for growth was 2·03·75 % (w/v) with a range from 0 to 17·020·5 % (depending on the strain); the optimum pH was between 8·0 and 9·5 with a range from 6·0 to 10·0. They were psychrotolerant, growing well at -1·8 °C with a maximum at 4045 °C and the optimum at 3740 °C. Lactate yields were 87100 % per consumed glucose; the residual products were formate, acetate and ethanol with a molar ratio of approximately 2 : 1 : 1. The product composition was markedly affected by the pH of fermentation medium; at higher pH, the yield of lactate decreased (6065 % at pH 9·0) and that of other products increased conversely. The cell-wall peptidoglycan type was type A4 , Orn- D -Glu, whereas that of the genus Alkalibacterium , the phylogenetically closest lactic acid bacterium, was type A4 , Orn- D -Asp. The major cellular fatty acids were C16 : 0, C16 : 1 9, C18 : 0 and C18 : 1 9 (oleic acid). The G+C content of the DNA was 34·636·2 mol%. The eight isolates were phenotypically homogeneous and formed a single genomic species. The 16S rRNA gene sequence analysis indicated that the isolates constituted an independent phylogenetic lineage within the radiation of lactic acid bacteria with 96·2 % similarity to the genus Alkalibacterium . The secondary structure and the nucleotide sequence of the V6 region of the 16S rRNA were characteristic of the organism among other related lactic acid genera. On the bases of phenotypic and phylogenetic distinctness, the organism was proposed to belong to a new genus and species, Marinilactibacillus psychrotolerans gen. nov., sp. nov. The type strain, M13-2 T (G+C=36·2 mol%), has been deposited in the IAM, NBRC, NCIMB and NRIC culture collections as IAM 14980 T , NBRC 100002 T , NCIMB 13873 T and NRIC 0510 T , respectively.
Published online ahead of print on 1 November 2002 as DOI 10.1099/ijs.0.02446-0.
The DDBJ accession numbers for the 16S rRNA gene sequences of strains M13-2 T , M13-3, M13-4, M13-5, M13-6, M13-7, O1-1, O21 and Carnobacterium mobile DSM 4848 T are AB083406 , AB083407 , AB083408 , AB083409 , AB083410 , AB083411 , AB083412 , AB083413 and AB083414 , respectively.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>12807191</pmid><doi>10.1099/ijs.0.02446-0</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | International journal of systematic and evolutionary microbiology, 2003-05, Vol.53 (3), p.711-720 |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Animals Bacteria Bacteriology Biodegradation, Environmental Biological and medical sciences Climate DNA, Ribosomal - analysis Fundamental and applied biological sciences. Psychology Hydrogen-Ion Concentration Japan Lactic acid Lactic Acid - metabolism Lactobacillaceae - classification Lactobacillaceae - genetics Lactobacillaceae - isolation & purification Marine Marine Biology Marinilactibacillus psychrotolerans Microbiology Molecular Sequence Data Phylogeny RNA, Ribosomal, 16S - genetics rRNA 16S Sequence Analysis, DNA Sodium Chloride - metabolism Systematics Tropical Climate |
| title | Marinilactibacillus psychrotolerans gen. nov., sp. nov., a halophilic and alkaliphilic marine lactic acid bacterium isolated from marine organisms in temperate and subtropical areas of Japan |
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