Characterization of the genome of a novel ilarvirus naturally infecting Cape gooseberry (Physalis peruviana)
As part of an initiative to characterize viruses infecting Cape gooseberry in the province of Antioquia (Colombia), we report the genome sequence of a new member of the genus Ilarvirus (family Bromoviridae ). This virus was identified in a Cape gooseberry plot in the municipality of Marinilla in a m...
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| Veröffentlicht in: | Archives of virology 2018-06, Vol.163 (6), p.1713-1716 |
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| container_title | Archives of virology |
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| creator | Gallo-García, Yuliana M. Jaramillo-Mesa, Helena Toro-Fernández, Luisa F. Marín-Montoya, Mauricio Gutiérrez, Pablo A. |
| description | As part of an initiative to characterize viruses infecting Cape gooseberry in the province of Antioquia (Colombia), we report the genome sequence of a new member of the genus
Ilarvirus
(family
Bromoviridae
). This virus was identified in a Cape gooseberry plot in the municipality of Marinilla in a mixed infection with potato virus Y (PVY) as part of high-throughput sequencing initiative. Results were confirmed by nested RT-PCR and DAS-ELISA. Phylogenetic analysis suggested that the Cape gooseberry ilarvirus is a new member of subgroup 1 and it is most closely related to ageratum latent virus (AgLV). The name “Cape gooseberry ilarvirus 1” (CGIV-1) is proposed for this new ilarvirus. |
| doi_str_mv | 10.1007/s00705-018-3796-8 |
| format | Article |
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Ilarvirus
(family
Bromoviridae
). This virus was identified in a Cape gooseberry plot in the municipality of Marinilla in a mixed infection with potato virus Y (PVY) as part of high-throughput sequencing initiative. Results were confirmed by nested RT-PCR and DAS-ELISA. Phylogenetic analysis suggested that the Cape gooseberry ilarvirus is a new member of subgroup 1 and it is most closely related to ageratum latent virus (AgLV). The name “Cape gooseberry ilarvirus 1” (CGIV-1) is proposed for this new ilarvirus.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-018-3796-8</identifier><identifier>PMID: 29502148</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Annotated Sequence Record ; Biomedical and Life Sciences ; Biomedicine ; Enzyme-linked immunosorbent assay ; Genomes ; Infectious Diseases ; Medical Microbiology ; Mixed infection ; Next-generation sequencing ; Nucleotide sequence ; Phylogeny ; Physalis peruviana ; Polymerase chain reaction ; Potato tuber necrotic ringspot ; Virology</subject><ispartof>Archives of virology, 2018-06, Vol.163 (6), p.1713-1716</ispartof><rights>Springer-Verlag GmbH Austria, part of Springer Nature 2018</rights><rights>Archives of Virology is a copyright of Springer, (2018). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c372t-d5b0ac82489b32575bb870639ad3805632b0286a9875feaca81de9cae8d5a2ab3</citedby><cites>FETCH-LOGICAL-c372t-d5b0ac82489b32575bb870639ad3805632b0286a9875feaca81de9cae8d5a2ab3</cites><orcidid>0000-0001-7123-2747 ; 0000-0002-7003-6485</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-018-3796-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-018-3796-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29502148$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gallo-García, Yuliana M.</creatorcontrib><creatorcontrib>Jaramillo-Mesa, Helena</creatorcontrib><creatorcontrib>Toro-Fernández, Luisa F.</creatorcontrib><creatorcontrib>Marín-Montoya, Mauricio</creatorcontrib><creatorcontrib>Gutiérrez, Pablo A.</creatorcontrib><title>Characterization of the genome of a novel ilarvirus naturally infecting Cape gooseberry (Physalis peruviana)</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>As part of an initiative to characterize viruses infecting Cape gooseberry in the province of Antioquia (Colombia), we report the genome sequence of a new member of the genus
Ilarvirus
(family
Bromoviridae
). This virus was identified in a Cape gooseberry plot in the municipality of Marinilla in a mixed infection with potato virus Y (PVY) as part of high-throughput sequencing initiative. Results were confirmed by nested RT-PCR and DAS-ELISA. Phylogenetic analysis suggested that the Cape gooseberry ilarvirus is a new member of subgroup 1 and it is most closely related to ageratum latent virus (AgLV). The name “Cape gooseberry ilarvirus 1” (CGIV-1) is proposed for this new ilarvirus.</description><subject>Annotated Sequence Record</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Enzyme-linked immunosorbent assay</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Mixed infection</subject><subject>Next-generation sequencing</subject><subject>Nucleotide sequence</subject><subject>Phylogeny</subject><subject>Physalis peruviana</subject><subject>Polymerase chain reaction</subject><subject>Potato tuber necrotic ringspot</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp1kU-LFDEQxYMo7rj6AbxIwMt6aK0k053kKIP_YEEPeg7V3dUzWTLJmHQPjJ9-M8yqIHipUJXfexXyGHsp4K0A0O9KLdA2IEyjtO0a84itxFrJxmhrHrMVKFg3pgNzxZ6VcgdQB6p9yq6kbUGKtVmxsNlhxmGm7H_h7FPkaeLzjviWYtrTuUMe05EC9wHz0eel8IjzkjGEE_dxomH2ccs3eKiilAr1lPOJ33zbnQoGX_iB8nL0GPHNc_ZkwlDoxcN5zX58_PB987m5_frpy-b9bTMoLedmbHvAwci1sb2SrW773mjolMVRGWg7JXuQpkNrdDsRDmjESHZAMmOLEnt1zW4uvoecfi5UZrf3ZaAQMFJaipMgwCirla3o63_Qu7TkWF9XKbBWa6tFpcSFGnIqJdPkDtnvMZ-cAHeOwl2icDUKd47Cmap59eC89Hsa_yh-_30F5AUo9SpuKf9d_X_Xe97plLQ</recordid><startdate>20180601</startdate><enddate>20180601</enddate><creator>Gallo-García, Yuliana M.</creator><creator>Jaramillo-Mesa, Helena</creator><creator>Toro-Fernández, Luisa F.</creator><creator>Marín-Montoya, Mauricio</creator><creator>Gutiérrez, Pablo A.</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-7123-2747</orcidid><orcidid>https://orcid.org/0000-0002-7003-6485</orcidid></search><sort><creationdate>20180601</creationdate><title>Characterization of the genome of a novel ilarvirus naturally infecting Cape gooseberry (Physalis peruviana)</title><author>Gallo-García, Yuliana M. ; 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Ilarvirus
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Bromoviridae
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| subjects | Annotated Sequence Record Biomedical and Life Sciences Biomedicine Enzyme-linked immunosorbent assay Genomes Infectious Diseases Medical Microbiology Mixed infection Next-generation sequencing Nucleotide sequence Phylogeny Physalis peruviana Polymerase chain reaction Potato tuber necrotic ringspot Virology |
| title | Characterization of the genome of a novel ilarvirus naturally infecting Cape gooseberry (Physalis peruviana) |
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