Evaluation of a rapid DNA process with the RapidHIT® ID system using a specialized cartridge for extracted and quantified human DNA

[Display omitted] •Performance of RapidHIT ID with RapidHIT EXT sample cartridges is described.•GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express chemistries are used for STR determination.•Demonstrated reproducibility, optimal sensitivity and no carryover.•RapidLINK software used for manual pr...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Forensic science international : genetics 2018-05, Vol.34, p.116-127
Hauptverfasser: Buscaino, Jacklyn, Barican, Arnaldo, Farrales, Leto, Goldman, Bruce, Klevenberg, Jim, Kuhn, Melissa, Lin, Frank, Nguyen, Phong, Salceda, Susana, Schueren, Robert, Smith, Corey, Troup, Charles, Tsou, Dean, Vangbo, Mattias, King, David
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 127
container_issue
container_start_page 116
container_title Forensic science international : genetics
container_volume 34
creator Buscaino, Jacklyn
Barican, Arnaldo
Farrales, Leto
Goldman, Bruce
Klevenberg, Jim
Kuhn, Melissa
Lin, Frank
Nguyen, Phong
Salceda, Susana
Schueren, Robert
Smith, Corey
Troup, Charles
Tsou, Dean
Vangbo, Mattias
King, David
description [Display omitted] •Performance of RapidHIT ID with RapidHIT EXT sample cartridges is described.•GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express chemistries are used for STR determination.•Demonstrated reproducibility, optimal sensitivity and no carryover.•RapidLINK software used for manual profile review and remote instrument management. The turn-around time of urgent crime scene DNA samples is often far longer than desired by law enforcement. Crime scene DNA sample processing involves both complex and routine processing steps. Simplification and integration of the routine steps would dramatically improve turn-around time and reduce the risk of operator contamination. Routine DNA extraction and quantitation is readily available. However, PCR amplification and electrophoretic analysis remain largely manual. Rapid DNA Analysis is a hands-free “swab in – profile out” process which consists of automated DNA extraction, amplification, separation, detection, and allele calling without human intervention. RapidHIT® 200 and RapidHIT ID are rapid DNA systems developed by IntegenX (Pleasanton, CA) and validated for the use of buccal swabs. A new generation of the RapidHIT sample cartridge for RapidHIT ID has been designed and tested which allows the loading of extracted and quantified DNA. RapidHIT EXT sample cartridge allows a user to generate a forensic DNA profile from less than 250 pg of extracted and quantified DNA in less than 90 min with less than one-minute hands-on time. Once the sample is loaded in the RapidHIT EXT sample cartridge, a DNA profile is produced after amplification, detection and automated data analysis. We report on sensitivity, reproducibility, concordance, DNA mixtures and carryover for EXT sample cartridges pre-loaded with GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express, (Thermo Fisher Scientific, Waltham, MA) STR chemistries. Purified and quantified DNA from mock crime scene samples were used to demonstrate the utility of these cartridges in an established forensic laboratory.
doi_str_mv 10.1016/j.fsigen.2018.02.010
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2007117739</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1872497318300966</els_id><sourcerecordid>2007117739</sourcerecordid><originalsourceid>FETCH-LOGICAL-c408t-c4ee38621bd26bc803c1d9aee32fb2ec7278a3438df56980a26b8a3d71b4510e3</originalsourceid><addsrcrecordid>eNp9kMlOHDEURa0oURiSP4iQl2y6eHYNdm2QEBBoCQUJkbXlsl91u1VDY7sgZJ3v4SP4Mtw0sMzGw_W5vnqXkB8MMgasOlplbXALHDIOTGbAM2DwiewyKeQMcl59fj3zWVGLfIfshbACKGvByq9kh9dFWXNZ7pJ_5_e6m3R040DHlmrq9dpZevbrhK79aDAE-uDiksYl0pvN0-X89vmJzs9oeAwRezoFNyySL6zRON25v2ip0T56ZxdI29FT_BO9NjHperD0btJDdK1L1-XU62ET9Y18aXUX8Pvbvk9-_zy_Pb2cXV1fzE9PrmamABnTipjLirPG8qoxEnLDbK2TyNuGoxFcSJ0XubRtWdUSdKKSYAVripIB5vvkcPtvGu1uwhBV74LBrtMDjlNQHEAwJkReJ7TYosaPIXhs1dq7XvtHxUBt-lcrte1fbfpXwFXqP9kO3hKmpkf7YXovPAHHWwDTnPcOvQrG4WDQOo8mKju6_ye8ADjumd4</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2007117739</pqid></control><display><type>article</type><title>Evaluation of a rapid DNA process with the RapidHIT® ID system using a specialized cartridge for extracted and quantified human DNA</title><source>Access via ScienceDirect (Elsevier)</source><creator>Buscaino, Jacklyn ; Barican, Arnaldo ; Farrales, Leto ; Goldman, Bruce ; Klevenberg, Jim ; Kuhn, Melissa ; Lin, Frank ; Nguyen, Phong ; Salceda, Susana ; Schueren, Robert ; Smith, Corey ; Troup, Charles ; Tsou, Dean ; Vangbo, Mattias ; King, David</creator><creatorcontrib>Buscaino, Jacklyn ; Barican, Arnaldo ; Farrales, Leto ; Goldman, Bruce ; Klevenberg, Jim ; Kuhn, Melissa ; Lin, Frank ; Nguyen, Phong ; Salceda, Susana ; Schueren, Robert ; Smith, Corey ; Troup, Charles ; Tsou, Dean ; Vangbo, Mattias ; King, David</creatorcontrib><description>[Display omitted] •Performance of RapidHIT ID with RapidHIT EXT sample cartridges is described.•GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express chemistries are used for STR determination.•Demonstrated reproducibility, optimal sensitivity and no carryover.•RapidLINK software used for manual profile review and remote instrument management. The turn-around time of urgent crime scene DNA samples is often far longer than desired by law enforcement. Crime scene DNA sample processing involves both complex and routine processing steps. Simplification and integration of the routine steps would dramatically improve turn-around time and reduce the risk of operator contamination. Routine DNA extraction and quantitation is readily available. However, PCR amplification and electrophoretic analysis remain largely manual. Rapid DNA Analysis is a hands-free “swab in – profile out” process which consists of automated DNA extraction, amplification, separation, detection, and allele calling without human intervention. RapidHIT® 200 and RapidHIT ID are rapid DNA systems developed by IntegenX (Pleasanton, CA) and validated for the use of buccal swabs. A new generation of the RapidHIT sample cartridge for RapidHIT ID has been designed and tested which allows the loading of extracted and quantified DNA. RapidHIT EXT sample cartridge allows a user to generate a forensic DNA profile from less than 250 pg of extracted and quantified DNA in less than 90 min with less than one-minute hands-on time. Once the sample is loaded in the RapidHIT EXT sample cartridge, a DNA profile is produced after amplification, detection and automated data analysis. We report on sensitivity, reproducibility, concordance, DNA mixtures and carryover for EXT sample cartridges pre-loaded with GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express, (Thermo Fisher Scientific, Waltham, MA) STR chemistries. Purified and quantified DNA from mock crime scene samples were used to demonstrate the utility of these cartridges in an established forensic laboratory.</description><identifier>ISSN: 1872-4973</identifier><identifier>EISSN: 1878-0326</identifier><identifier>DOI: 10.1016/j.fsigen.2018.02.010</identifier><identifier>PMID: 29459285</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>AmpFLSTR® NGM SElect™ Express ; GlobalFiler® Express ; Rapid DNA ; RapidHIT® ID ; RapidLINK ; STR</subject><ispartof>Forensic science international : genetics, 2018-05, Vol.34, p.116-127</ispartof><rights>2018 The Authors</rights><rights>Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c408t-c4ee38621bd26bc803c1d9aee32fb2ec7278a3438df56980a26b8a3d71b4510e3</citedby><cites>FETCH-LOGICAL-c408t-c4ee38621bd26bc803c1d9aee32fb2ec7278a3438df56980a26b8a3d71b4510e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.fsigen.2018.02.010$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29459285$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Buscaino, Jacklyn</creatorcontrib><creatorcontrib>Barican, Arnaldo</creatorcontrib><creatorcontrib>Farrales, Leto</creatorcontrib><creatorcontrib>Goldman, Bruce</creatorcontrib><creatorcontrib>Klevenberg, Jim</creatorcontrib><creatorcontrib>Kuhn, Melissa</creatorcontrib><creatorcontrib>Lin, Frank</creatorcontrib><creatorcontrib>Nguyen, Phong</creatorcontrib><creatorcontrib>Salceda, Susana</creatorcontrib><creatorcontrib>Schueren, Robert</creatorcontrib><creatorcontrib>Smith, Corey</creatorcontrib><creatorcontrib>Troup, Charles</creatorcontrib><creatorcontrib>Tsou, Dean</creatorcontrib><creatorcontrib>Vangbo, Mattias</creatorcontrib><creatorcontrib>King, David</creatorcontrib><title>Evaluation of a rapid DNA process with the RapidHIT® ID system using a specialized cartridge for extracted and quantified human DNA</title><title>Forensic science international : genetics</title><addtitle>Forensic Sci Int Genet</addtitle><description>[Display omitted] •Performance of RapidHIT ID with RapidHIT EXT sample cartridges is described.•GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express chemistries are used for STR determination.•Demonstrated reproducibility, optimal sensitivity and no carryover.•RapidLINK software used for manual profile review and remote instrument management. The turn-around time of urgent crime scene DNA samples is often far longer than desired by law enforcement. Crime scene DNA sample processing involves both complex and routine processing steps. Simplification and integration of the routine steps would dramatically improve turn-around time and reduce the risk of operator contamination. Routine DNA extraction and quantitation is readily available. However, PCR amplification and electrophoretic analysis remain largely manual. Rapid DNA Analysis is a hands-free “swab in – profile out” process which consists of automated DNA extraction, amplification, separation, detection, and allele calling without human intervention. RapidHIT® 200 and RapidHIT ID are rapid DNA systems developed by IntegenX (Pleasanton, CA) and validated for the use of buccal swabs. A new generation of the RapidHIT sample cartridge for RapidHIT ID has been designed and tested which allows the loading of extracted and quantified DNA. RapidHIT EXT sample cartridge allows a user to generate a forensic DNA profile from less than 250 pg of extracted and quantified DNA in less than 90 min with less than one-minute hands-on time. Once the sample is loaded in the RapidHIT EXT sample cartridge, a DNA profile is produced after amplification, detection and automated data analysis. We report on sensitivity, reproducibility, concordance, DNA mixtures and carryover for EXT sample cartridges pre-loaded with GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express, (Thermo Fisher Scientific, Waltham, MA) STR chemistries. Purified and quantified DNA from mock crime scene samples were used to demonstrate the utility of these cartridges in an established forensic laboratory.</description><subject>AmpFLSTR® NGM SElect™ Express</subject><subject>GlobalFiler® Express</subject><subject>Rapid DNA</subject><subject>RapidHIT® ID</subject><subject>RapidLINK</subject><subject>STR</subject><issn>1872-4973</issn><issn>1878-0326</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp9kMlOHDEURa0oURiSP4iQl2y6eHYNdm2QEBBoCQUJkbXlsl91u1VDY7sgZJ3v4SP4Mtw0sMzGw_W5vnqXkB8MMgasOlplbXALHDIOTGbAM2DwiewyKeQMcl59fj3zWVGLfIfshbACKGvByq9kh9dFWXNZ7pJ_5_e6m3R040DHlmrq9dpZevbrhK79aDAE-uDiksYl0pvN0-X89vmJzs9oeAwRezoFNyySL6zRON25v2ip0T56ZxdI29FT_BO9NjHperD0btJDdK1L1-XU62ET9Y18aXUX8Pvbvk9-_zy_Pb2cXV1fzE9PrmamABnTipjLirPG8qoxEnLDbK2TyNuGoxFcSJ0XubRtWdUSdKKSYAVripIB5vvkcPtvGu1uwhBV74LBrtMDjlNQHEAwJkReJ7TYosaPIXhs1dq7XvtHxUBt-lcrte1fbfpXwFXqP9kO3hKmpkf7YXovPAHHWwDTnPcOvQrG4WDQOo8mKju6_ye8ADjumd4</recordid><startdate>201805</startdate><enddate>201805</enddate><creator>Buscaino, Jacklyn</creator><creator>Barican, Arnaldo</creator><creator>Farrales, Leto</creator><creator>Goldman, Bruce</creator><creator>Klevenberg, Jim</creator><creator>Kuhn, Melissa</creator><creator>Lin, Frank</creator><creator>Nguyen, Phong</creator><creator>Salceda, Susana</creator><creator>Schueren, Robert</creator><creator>Smith, Corey</creator><creator>Troup, Charles</creator><creator>Tsou, Dean</creator><creator>Vangbo, Mattias</creator><creator>King, David</creator><general>Elsevier B.V</general><scope>6I.</scope><scope>AAFTH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201805</creationdate><title>Evaluation of a rapid DNA process with the RapidHIT® ID system using a specialized cartridge for extracted and quantified human DNA</title><author>Buscaino, Jacklyn ; Barican, Arnaldo ; Farrales, Leto ; Goldman, Bruce ; Klevenberg, Jim ; Kuhn, Melissa ; Lin, Frank ; Nguyen, Phong ; Salceda, Susana ; Schueren, Robert ; Smith, Corey ; Troup, Charles ; Tsou, Dean ; Vangbo, Mattias ; King, David</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c408t-c4ee38621bd26bc803c1d9aee32fb2ec7278a3438df56980a26b8a3d71b4510e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>AmpFLSTR® NGM SElect™ Express</topic><topic>GlobalFiler® Express</topic><topic>Rapid DNA</topic><topic>RapidHIT® ID</topic><topic>RapidLINK</topic><topic>STR</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Buscaino, Jacklyn</creatorcontrib><creatorcontrib>Barican, Arnaldo</creatorcontrib><creatorcontrib>Farrales, Leto</creatorcontrib><creatorcontrib>Goldman, Bruce</creatorcontrib><creatorcontrib>Klevenberg, Jim</creatorcontrib><creatorcontrib>Kuhn, Melissa</creatorcontrib><creatorcontrib>Lin, Frank</creatorcontrib><creatorcontrib>Nguyen, Phong</creatorcontrib><creatorcontrib>Salceda, Susana</creatorcontrib><creatorcontrib>Schueren, Robert</creatorcontrib><creatorcontrib>Smith, Corey</creatorcontrib><creatorcontrib>Troup, Charles</creatorcontrib><creatorcontrib>Tsou, Dean</creatorcontrib><creatorcontrib>Vangbo, Mattias</creatorcontrib><creatorcontrib>King, David</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Forensic science international : genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Buscaino, Jacklyn</au><au>Barican, Arnaldo</au><au>Farrales, Leto</au><au>Goldman, Bruce</au><au>Klevenberg, Jim</au><au>Kuhn, Melissa</au><au>Lin, Frank</au><au>Nguyen, Phong</au><au>Salceda, Susana</au><au>Schueren, Robert</au><au>Smith, Corey</au><au>Troup, Charles</au><au>Tsou, Dean</au><au>Vangbo, Mattias</au><au>King, David</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluation of a rapid DNA process with the RapidHIT® ID system using a specialized cartridge for extracted and quantified human DNA</atitle><jtitle>Forensic science international : genetics</jtitle><addtitle>Forensic Sci Int Genet</addtitle><date>2018-05</date><risdate>2018</risdate><volume>34</volume><spage>116</spage><epage>127</epage><pages>116-127</pages><issn>1872-4973</issn><eissn>1878-0326</eissn><abstract>[Display omitted] •Performance of RapidHIT ID with RapidHIT EXT sample cartridges is described.•GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express chemistries are used for STR determination.•Demonstrated reproducibility, optimal sensitivity and no carryover.•RapidLINK software used for manual profile review and remote instrument management. The turn-around time of urgent crime scene DNA samples is often far longer than desired by law enforcement. Crime scene DNA sample processing involves both complex and routine processing steps. Simplification and integration of the routine steps would dramatically improve turn-around time and reduce the risk of operator contamination. Routine DNA extraction and quantitation is readily available. However, PCR amplification and electrophoretic analysis remain largely manual. Rapid DNA Analysis is a hands-free “swab in – profile out” process which consists of automated DNA extraction, amplification, separation, detection, and allele calling without human intervention. RapidHIT® 200 and RapidHIT ID are rapid DNA systems developed by IntegenX (Pleasanton, CA) and validated for the use of buccal swabs. A new generation of the RapidHIT sample cartridge for RapidHIT ID has been designed and tested which allows the loading of extracted and quantified DNA. RapidHIT EXT sample cartridge allows a user to generate a forensic DNA profile from less than 250 pg of extracted and quantified DNA in less than 90 min with less than one-minute hands-on time. Once the sample is loaded in the RapidHIT EXT sample cartridge, a DNA profile is produced after amplification, detection and automated data analysis. We report on sensitivity, reproducibility, concordance, DNA mixtures and carryover for EXT sample cartridges pre-loaded with GlobalFiler® Express and AmpFLSTR® NGM SElect™ Express, (Thermo Fisher Scientific, Waltham, MA) STR chemistries. Purified and quantified DNA from mock crime scene samples were used to demonstrate the utility of these cartridges in an established forensic laboratory.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>29459285</pmid><doi>10.1016/j.fsigen.2018.02.010</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1872-4973
ispartof Forensic science international : genetics, 2018-05, Vol.34, p.116-127
issn 1872-4973
1878-0326
language eng
recordid cdi_proquest_miscellaneous_2007117739
source Access via ScienceDirect (Elsevier)
subjects AmpFLSTR® NGM SElect™ Express
GlobalFiler® Express
Rapid DNA
RapidHIT® ID
RapidLINK
STR
title Evaluation of a rapid DNA process with the RapidHIT® ID system using a specialized cartridge for extracted and quantified human DNA
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-22T10%3A08%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Evaluation%20of%20a%20rapid%20DNA%20process%20with%20the%20RapidHIT%C2%AE%20ID%20system%20using%20a%20specialized%20cartridge%20for%20extracted%20and%20quantified%20human%20DNA&rft.jtitle=Forensic%20science%20international%20:%20genetics&rft.au=Buscaino,%20Jacklyn&rft.date=2018-05&rft.volume=34&rft.spage=116&rft.epage=127&rft.pages=116-127&rft.issn=1872-4973&rft.eissn=1878-0326&rft_id=info:doi/10.1016/j.fsigen.2018.02.010&rft_dat=%3Cproquest_cross%3E2007117739%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2007117739&rft_id=info:pmid/29459285&rft_els_id=S1872497318300966&rfr_iscdi=true