Genetic variation in three Chinese peat mosses (Sphagnum) based on microsatellite markers, with primer information and analysis of ascertainment bias
Primer sequences are provided for amplification of 21 microsatellite-containing loci in Sphagnum. Although these primers were developed for species in Sphagnum section Subsecunda, they amplify microsatellite loci in most species that have been tested across the genus Sphagnum. Results are described...
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| Veröffentlicht in: | The Bryologist 2008-06, Vol.111 (2), p.271-281 |
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| container_title | The Bryologist |
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| creator | Shaw, A. Jonathan Cao, Tong Wang, Li-song Flatberg, Kjell Ivar Flatberg, Bergfrid Shaw, Blanka Zhou, Ping Boles, Sandra Terracciano, Stefano |
| description | Primer sequences are provided for amplification of 21 microsatellite-containing loci in Sphagnum. Although these primers were developed for species in Sphagnum section Subsecunda, they amplify microsatellite loci in most species that have been tested across the genus Sphagnum. Results are described from a survey of genetic variation in three species of Sphagnum collected in China: S. junghuhnianum in section Acutifolia, and S. palustre and S. imbricatum in section Sphagnum. Six and eight multilocus genotypes were detected within one population each of S. junghuhnianum and S. palustre, respectively. Four populations of S. imbricatum were sampled; they vary substantially in allele frequencies and in the amount of genetic diversity detected; overall, approximately 40% of the genetic variation sampled within S. imbricatum could be attributed to differentiation among populations. Microsatellite profiles indicate that S. palustre gametophytes are diploid whereas those of S. junghuhnianum and S. imbricatum are haploid. |
| doi_str_mv | 10.1639/0007-2745(2008)111[271:GVITCP]2.0.CO;2 |
| format | Article |
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Jonathan ; Cao, Tong ; Wang, Li-song ; Flatberg, Kjell Ivar ; Flatberg, Bergfrid ; Shaw, Blanka ; Zhou, Ping ; Boles, Sandra ; Terracciano, Stefano</creator><creatorcontrib>Shaw, A. Jonathan ; Cao, Tong ; Wang, Li-song ; Flatberg, Kjell Ivar ; Flatberg, Bergfrid ; Shaw, Blanka ; Zhou, Ping ; Boles, Sandra ; Terracciano, Stefano</creatorcontrib><description>Primer sequences are provided for amplification of 21 microsatellite-containing loci in Sphagnum. Although these primers were developed for species in Sphagnum section Subsecunda, they amplify microsatellite loci in most species that have been tested across the genus Sphagnum. Results are described from a survey of genetic variation in three species of Sphagnum collected in China: S. junghuhnianum in section Acutifolia, and S. palustre and S. imbricatum in section Sphagnum. Six and eight multilocus genotypes were detected within one population each of S. junghuhnianum and S. palustre, respectively. Four populations of S. imbricatum were sampled; they vary substantially in allele frequencies and in the amount of genetic diversity detected; overall, approximately 40% of the genetic variation sampled within S. imbricatum could be attributed to differentiation among populations. Microsatellite profiles indicate that S. palustre gametophytes are diploid whereas those of S. junghuhnianum and S. imbricatum are haploid.</description><identifier>ISSN: 0007-2745</identifier><identifier>EISSN: 1938-4378</identifier><identifier>DOI: 10.1639/0007-2745(2008)111[271:GVITCP]2.0.CO;2</identifier><language>eng</language><publisher>New York Botanical Garden Bronx, NY 10458-5126: The American Bryological and Lichenological Society, Inc</publisher><subject>Ascertainment bias ; Biological taxonomies ; DNA ; DNA fingerprinting ; Ecological genetics ; Genetic loci ; Genetic variation ; Genotypes ; Microsatellite repeats ; Microsatellites ; Plants ; Population genetics ; Research s ; S. imbricatum ; S. junghuhnianum ; S. palustre ; Sphagnaceae ; Sphagnum</subject><ispartof>The Bryologist, 2008-06, Vol.111 (2), p.271-281</ispartof><rights>The American Bryological and Lichenological Society, Inc.</rights><rights>Copyright 2008 The American Bryological and Lichenological Society, Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-b401t-48fd86d9465a080a1d14192a7cdfaa8a94337ca7d6ab5c3fa0ea595ab8e3461d3</citedby><cites>FETCH-LOGICAL-b401t-48fd86d9465a080a1d14192a7cdfaa8a94337ca7d6ab5c3fa0ea595ab8e3461d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://bioone.org/doi/pdf/10.1639/0007-2745(2008)111[271:GVITCP]2.0.CO;2$$EPDF$$P50$$Gbioone$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/20110940$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,26978,27924,27925,52363,58017,58250</link.rule.ids></links><search><creatorcontrib>Shaw, A. Jonathan</creatorcontrib><creatorcontrib>Cao, Tong</creatorcontrib><creatorcontrib>Wang, Li-song</creatorcontrib><creatorcontrib>Flatberg, Kjell Ivar</creatorcontrib><creatorcontrib>Flatberg, Bergfrid</creatorcontrib><creatorcontrib>Shaw, Blanka</creatorcontrib><creatorcontrib>Zhou, Ping</creatorcontrib><creatorcontrib>Boles, Sandra</creatorcontrib><creatorcontrib>Terracciano, Stefano</creatorcontrib><title>Genetic variation in three Chinese peat mosses (Sphagnum) based on microsatellite markers, with primer information and analysis of ascertainment bias</title><title>The Bryologist</title><description>Primer sequences are provided for amplification of 21 microsatellite-containing loci in Sphagnum. Although these primers were developed for species in Sphagnum section Subsecunda, they amplify microsatellite loci in most species that have been tested across the genus Sphagnum. Results are described from a survey of genetic variation in three species of Sphagnum collected in China: S. junghuhnianum in section Acutifolia, and S. palustre and S. imbricatum in section Sphagnum. Six and eight multilocus genotypes were detected within one population each of S. junghuhnianum and S. palustre, respectively. Four populations of S. imbricatum were sampled; they vary substantially in allele frequencies and in the amount of genetic diversity detected; overall, approximately 40% of the genetic variation sampled within S. imbricatum could be attributed to differentiation among populations. Microsatellite profiles indicate that S. palustre gametophytes are diploid whereas those of S. junghuhnianum and S. imbricatum are haploid.</description><subject>Ascertainment bias</subject><subject>Biological taxonomies</subject><subject>DNA</subject><subject>DNA fingerprinting</subject><subject>Ecological genetics</subject><subject>Genetic loci</subject><subject>Genetic variation</subject><subject>Genotypes</subject><subject>Microsatellite repeats</subject><subject>Microsatellites</subject><subject>Plants</subject><subject>Population genetics</subject><subject>Research s</subject><subject>S. imbricatum</subject><subject>S. junghuhnianum</subject><subject>S. palustre</subject><subject>Sphagnaceae</subject><subject>Sphagnum</subject><issn>0007-2745</issn><issn>1938-4378</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqdkd2KFDEQhYMoOK4-gpAr2QV7rKTTf3olrTsuLIzg6o1IqO6udrJ2J2OSUfZBfF_TtOwDeBFCqDpfpc5hbCtgK8q8eQUAVSYrVZxLgPpCCPFVVuL17svVTfvxm9zCtt2_kQ_YRjR5nam8qh-yzb3oMXsSwi2AKCWUG_ZnR5ai6fkv9AajcZYby-PBE_H2YCwF4kfCyGcXAgV-_ul4wO_2NF_wDgMNPAlm03sXMNI0mUh8Rv-DfHjJf5t44EdvZvIJOjo_rwPQDungdBdM4G7kGHryEY2dyUbeGQxP2aMRp0DP_t1n7PPl-5v2Q3a93121b6-zToGImarHoS6HRpUFQg0oBqFEI7HqhxGxxkbledVjNZTYFX0-IhAWTYFdTbkqxZCfsRcr9-jdzxOFqGeTPjNNaMmdgk4Gq7IpqtR4uTYumwZPo172Qn-nBeglFb0YrBeDF1GtUyrpJfSaipYadLvXMoGer6DbEJ2_p0gQAhoFqf5urXfGOUv_O-YvfcGlRg</recordid><startdate>200806</startdate><enddate>200806</enddate><creator>Shaw, A. Jonathan</creator><creator>Cao, Tong</creator><creator>Wang, Li-song</creator><creator>Flatberg, Kjell Ivar</creator><creator>Flatberg, Bergfrid</creator><creator>Shaw, Blanka</creator><creator>Zhou, Ping</creator><creator>Boles, Sandra</creator><creator>Terracciano, Stefano</creator><general>The American Bryological and Lichenological Society, Inc</general><general>American Bryological and Lichenological Society</general><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>200806</creationdate><title>Genetic variation in three Chinese peat mosses (Sphagnum) based on microsatellite markers, with primer information and analysis of ascertainment bias</title><author>Shaw, A. Jonathan ; Cao, Tong ; Wang, Li-song ; Flatberg, Kjell Ivar ; Flatberg, Bergfrid ; Shaw, Blanka ; Zhou, Ping ; Boles, Sandra ; Terracciano, Stefano</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b401t-48fd86d9465a080a1d14192a7cdfaa8a94337ca7d6ab5c3fa0ea595ab8e3461d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Ascertainment bias</topic><topic>Biological taxonomies</topic><topic>DNA</topic><topic>DNA fingerprinting</topic><topic>Ecological genetics</topic><topic>Genetic loci</topic><topic>Genetic variation</topic><topic>Genotypes</topic><topic>Microsatellite repeats</topic><topic>Microsatellites</topic><topic>Plants</topic><topic>Population genetics</topic><topic>Research s</topic><topic>S. imbricatum</topic><topic>S. junghuhnianum</topic><topic>S. palustre</topic><topic>Sphagnaceae</topic><topic>Sphagnum</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shaw, A. Jonathan</creatorcontrib><creatorcontrib>Cao, Tong</creatorcontrib><creatorcontrib>Wang, Li-song</creatorcontrib><creatorcontrib>Flatberg, Kjell Ivar</creatorcontrib><creatorcontrib>Flatberg, Bergfrid</creatorcontrib><creatorcontrib>Shaw, Blanka</creatorcontrib><creatorcontrib>Zhou, Ping</creatorcontrib><creatorcontrib>Boles, Sandra</creatorcontrib><creatorcontrib>Terracciano, Stefano</creatorcontrib><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>The Bryologist</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shaw, A. Jonathan</au><au>Cao, Tong</au><au>Wang, Li-song</au><au>Flatberg, Kjell Ivar</au><au>Flatberg, Bergfrid</au><au>Shaw, Blanka</au><au>Zhou, Ping</au><au>Boles, Sandra</au><au>Terracciano, Stefano</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic variation in three Chinese peat mosses (Sphagnum) based on microsatellite markers, with primer information and analysis of ascertainment bias</atitle><jtitle>The Bryologist</jtitle><date>2008-06</date><risdate>2008</risdate><volume>111</volume><issue>2</issue><spage>271</spage><epage>281</epage><pages>271-281</pages><issn>0007-2745</issn><eissn>1938-4378</eissn><abstract>Primer sequences are provided for amplification of 21 microsatellite-containing loci in Sphagnum. Although these primers were developed for species in Sphagnum section Subsecunda, they amplify microsatellite loci in most species that have been tested across the genus Sphagnum. Results are described from a survey of genetic variation in three species of Sphagnum collected in China: S. junghuhnianum in section Acutifolia, and S. palustre and S. imbricatum in section Sphagnum. Six and eight multilocus genotypes were detected within one population each of S. junghuhnianum and S. palustre, respectively. Four populations of S. imbricatum were sampled; they vary substantially in allele frequencies and in the amount of genetic diversity detected; overall, approximately 40% of the genetic variation sampled within S. imbricatum could be attributed to differentiation among populations. Microsatellite profiles indicate that S. palustre gametophytes are diploid whereas those of S. junghuhnianum and S. imbricatum are haploid.</abstract><cop>New York Botanical Garden Bronx, NY 10458-5126</cop><pub>The American Bryological and Lichenological Society, Inc</pub><doi>10.1639/0007-2745(2008)111[271:GVITCP]2.0.CO;2</doi><tpages>11</tpages></addata></record> |
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| subjects | Ascertainment bias Biological taxonomies DNA DNA fingerprinting Ecological genetics Genetic loci Genetic variation Genotypes Microsatellite repeats Microsatellites Plants Population genetics Research s S. imbricatum S. junghuhnianum S. palustre Sphagnaceae Sphagnum |
| title | Genetic variation in three Chinese peat mosses (Sphagnum) based on microsatellite markers, with primer information and analysis of ascertainment bias |
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