Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC)

The structure and dynamics of DNA are critically related to its function. Molecular dynamics simulations augment experiment by providing detailed information about the atomic motions. However, to date the simulations have not been long enough for convergence of the dynamics and structural properties...

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Veröffentlicht in:Biochimica et biophysica acta 2015-05, Vol.1850 (5), p.1041-1058
Hauptverfasser: Galindo-Murillo, Rodrigo, Roe, Daniel R., Cheatham, Thomas E.
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Sprache:eng
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