Assessment of microbial diversity in the river trout Salmo trutta fario L. intestinal tract identified by partial 16S rRNA gene sequence analysis
The microbial diversity of the intestinal tract content of the river trout from two Lithuanian rivers has been investigated by molecular methods: polymerase chain reaction amplification and sequencing of partial 16S rRNA genes. Predominant bacterial populations detected in the river trout intestinal...
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| Veröffentlicht in: | Fisheries science 2006-06, Vol.72 (3), p.597-602 |
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| creator | Skrodenyte-Arbaciauskiene, V.(Vilnius Univ. (Lithuania)) Sruoga, A Butkauskas, D |
| description | The microbial diversity of the intestinal tract content of the river trout from two Lithuanian rivers has been investigated by molecular methods: polymerase chain reaction amplification and sequencing of partial 16S rRNA genes. Predominant bacterial populations detected in the river trout intestinal tract from the Skroblus River were Rahnella (21%), from the Žeimena River, Aeromonas (41.7%) and Plesiomonas (22.9%). Buttiauxella agrestis, Budvicia aquatica, Erwinia persicinus, Yersinia mollaretii, Y. kristensenii, Y. rohdei, Moellerella wisconsensis, Obesumbacterium proteus, Pantoea cedenensis, Rahnella aquatilis, and Rahnella sp. from the Enterobacteriaceae family have been detected in the intestinal tract of freshwater salmonid fish for the first time. |
| doi_str_mv | 10.1111/j.1444-2906.2006.01189.x |
| format | Article |
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Buttiauxella agrestis, Budvicia aquatica, Erwinia persicinus, Yersinia mollaretii, Y. kristensenii, Y. rohdei, Moellerella wisconsensis, Obesumbacterium proteus, Pantoea cedenensis, Rahnella aquatilis, and Rahnella sp. from the Enterobacteriaceae family have been detected in the intestinal tract of freshwater salmonid fish for the first time.</description><identifier>ISSN: 0919-9268</identifier><identifier>EISSN: 1444-2906</identifier><identifier>DOI: 10.1111/j.1444-2906.2006.01189.x</identifier><language>eng</language><publisher>Melbourne, Australia: Blackwell Publishing Asia</publisher><subject>16S rRNA gene sequencing ; Aeromonas ; Bacteria ; BIODIVERSIDAD ; BIODIVERSITE ; BIODIVERSITY ; Budvicia aquatica ; Buttiauxella ; Buttiauxella agrestis ; COURS D'EAU ; CURSOS DE AGUA ; Enterobacteriaceae ; Erwinia ; Erwinia persicinus ; FLORA MICROBIANA ; FLORE MICROBIENNE ; Freshwater ; Freshwater fish ; INTESTIN ; intestinal microbiota ; INTESTINES ; INTESTINOS ; MICROBIAL FLORA ; Moellerella wiscinsensis ; Moellerella wisconsensis ; NUCLEOTIDE SEQUENCE ; Obesumbacterium proteus ; Pantoea cedenensis ; Plesiomonas ; Polymerase chain reaction ; Proteus ; Rahnella ; Rahnella aquatilis ; river trout ; RIVERS ; SALMO TRUTTA ; Salmo trutta fario ; SECUENCIA NUCLEOTIDICA ; SEQUENCE NUCLEOTIDIQUE ; Trout ; Yersinia ; Yersinia kristensenii ; Yersinia mollaretii ; Yersinia rohdei</subject><ispartof>Fisheries science, 2006-06, Vol.72 (3), p.597-602</ispartof><rights>The Japanese Society of Fisheries Science 2006</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4539-a3c390e7b79e6f0b5cc7d0e65aa635e9582c19e0ff94336d253202a1b4e2c4bf3</citedby><cites>FETCH-LOGICAL-c4539-a3c390e7b79e6f0b5cc7d0e65aa635e9582c19e0ff94336d253202a1b4e2c4bf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1444-2906.2006.01189.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1444-2906.2006.01189.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1416,27923,27924,45573,45574</link.rule.ids></links><search><creatorcontrib>Skrodenyte-Arbaciauskiene, V.(Vilnius Univ. (Lithuania))</creatorcontrib><creatorcontrib>Sruoga, A</creatorcontrib><creatorcontrib>Butkauskas, D</creatorcontrib><title>Assessment of microbial diversity in the river trout Salmo trutta fario L. intestinal tract identified by partial 16S rRNA gene sequence analysis</title><title>Fisheries science</title><description>The microbial diversity of the intestinal tract content of the river trout from two Lithuanian rivers has been investigated by molecular methods: polymerase chain reaction amplification and sequencing of partial 16S rRNA genes. Predominant bacterial populations detected in the river trout intestinal tract from the Skroblus River were Rahnella (21%), from the Žeimena River, Aeromonas (41.7%) and Plesiomonas (22.9%). Buttiauxella agrestis, Budvicia aquatica, Erwinia persicinus, Yersinia mollaretii, Y. kristensenii, Y. rohdei, Moellerella wisconsensis, Obesumbacterium proteus, Pantoea cedenensis, Rahnella aquatilis, and Rahnella sp. from the Enterobacteriaceae family have been detected in the intestinal tract of freshwater salmonid fish for the first time.</description><subject>16S rRNA gene sequencing</subject><subject>Aeromonas</subject><subject>Bacteria</subject><subject>BIODIVERSIDAD</subject><subject>BIODIVERSITE</subject><subject>BIODIVERSITY</subject><subject>Budvicia aquatica</subject><subject>Buttiauxella</subject><subject>Buttiauxella agrestis</subject><subject>COURS D'EAU</subject><subject>CURSOS DE AGUA</subject><subject>Enterobacteriaceae</subject><subject>Erwinia</subject><subject>Erwinia persicinus</subject><subject>FLORA MICROBIANA</subject><subject>FLORE MICROBIENNE</subject><subject>Freshwater</subject><subject>Freshwater fish</subject><subject>INTESTIN</subject><subject>intestinal microbiota</subject><subject>INTESTINES</subject><subject>INTESTINOS</subject><subject>MICROBIAL FLORA</subject><subject>Moellerella wiscinsensis</subject><subject>Moellerella wisconsensis</subject><subject>NUCLEOTIDE SEQUENCE</subject><subject>Obesumbacterium proteus</subject><subject>Pantoea cedenensis</subject><subject>Plesiomonas</subject><subject>Polymerase chain reaction</subject><subject>Proteus</subject><subject>Rahnella</subject><subject>Rahnella aquatilis</subject><subject>river trout</subject><subject>RIVERS</subject><subject>SALMO TRUTTA</subject><subject>Salmo trutta fario</subject><subject>SECUENCIA NUCLEOTIDICA</subject><subject>SEQUENCE NUCLEOTIDIQUE</subject><subject>Trout</subject><subject>Yersinia</subject><subject>Yersinia kristensenii</subject><subject>Yersinia mollaretii</subject><subject>Yersinia rohdei</subject><issn>0919-9268</issn><issn>1444-2906</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqNkctu1DAUhiMEEkPhEZAsFuwSfMvFCxajil7QiCIG1pbjHBePchl8HGgeo29ch0EsuqoX9pH9fUe2_ywjjBYsjQ-Hgkkpc65oVXCaJspYo4q7Z9nm_8HzbEMVU7niVfMye4V4oIksabPJ7reIgDjAGMnkyOBtmFpvetL53xDQx4X4kcSfQMK6QWKY5kj2ph-mVM8xGuJM8BPZFQmMgNGPyY7B2Eh8l9p656Ej7UKOJsS1M6v2JHz7siW3MAJB-DXDaIGY5C3o8XX2wpke4c2_9Sz7cfHp-_lVvru5vD7f7nIrS6FyI6xQFOq2VlA52pbW1h2FqjSmEiWosuGWKaDOKSlE1fFScMoNayVwK1snzrL3p77HMKUrYNSDRwt9b0aYZtRMKSFFyZ8AVpw1cgXfPQIP0xzSs1BzXguaqBVqTlD6aMQATh-DH0xYNKN6TVQf9BqcXoPTa6L6b6L6LqkfT-of38PyZE9fXO_XKvlvT74zkza3waP-_DWRNaWNrJh4ANtbsQY</recordid><startdate>200606</startdate><enddate>200606</enddate><creator>Skrodenyte-Arbaciauskiene, V.(Vilnius Univ. 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(Lithuania))</au><au>Sruoga, A</au><au>Butkauskas, D</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Assessment of microbial diversity in the river trout Salmo trutta fario L. intestinal tract identified by partial 16S rRNA gene sequence analysis</atitle><jtitle>Fisheries science</jtitle><date>2006-06</date><risdate>2006</risdate><volume>72</volume><issue>3</issue><spage>597</spage><epage>602</epage><pages>597-602</pages><issn>0919-9268</issn><eissn>1444-2906</eissn><abstract>The microbial diversity of the intestinal tract content of the river trout from two Lithuanian rivers has been investigated by molecular methods: polymerase chain reaction amplification and sequencing of partial 16S rRNA genes. Predominant bacterial populations detected in the river trout intestinal tract from the Skroblus River were Rahnella (21%), from the Žeimena River, Aeromonas (41.7%) and Plesiomonas (22.9%). Buttiauxella agrestis, Budvicia aquatica, Erwinia persicinus, Yersinia mollaretii, Y. kristensenii, Y. rohdei, Moellerella wisconsensis, Obesumbacterium proteus, Pantoea cedenensis, Rahnella aquatilis, and Rahnella sp. from the Enterobacteriaceae family have been detected in the intestinal tract of freshwater salmonid fish for the first time.</abstract><cop>Melbourne, Australia</cop><pub>Blackwell Publishing Asia</pub><doi>10.1111/j.1444-2906.2006.01189.x</doi><tpages>6</tpages></addata></record> |
| fulltext | fulltext |
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| ispartof | Fisheries science, 2006-06, Vol.72 (3), p.597-602 |
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| language | eng |
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| subjects | 16S rRNA gene sequencing Aeromonas Bacteria BIODIVERSIDAD BIODIVERSITE BIODIVERSITY Budvicia aquatica Buttiauxella Buttiauxella agrestis COURS D'EAU CURSOS DE AGUA Enterobacteriaceae Erwinia Erwinia persicinus FLORA MICROBIANA FLORE MICROBIENNE Freshwater Freshwater fish INTESTIN intestinal microbiota INTESTINES INTESTINOS MICROBIAL FLORA Moellerella wiscinsensis Moellerella wisconsensis NUCLEOTIDE SEQUENCE Obesumbacterium proteus Pantoea cedenensis Plesiomonas Polymerase chain reaction Proteus Rahnella Rahnella aquatilis river trout RIVERS SALMO TRUTTA Salmo trutta fario SECUENCIA NUCLEOTIDICA SEQUENCE NUCLEOTIDIQUE Trout Yersinia Yersinia kristensenii Yersinia mollaretii Yersinia rohdei |
| title | Assessment of microbial diversity in the river trout Salmo trutta fario L. intestinal tract identified by partial 16S rRNA gene sequence analysis |
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