Roseomonas deserti sp. nov., isolated from crude oil contaminated desert sand
Two dark pink pigmented bacterial strains (M3 and M11) were isolated from crude oil contaminated desert sand from Kuwait. Both strains were Gram-stain-negative and small-rod to oval-shaped bacteria. Strains M3 and M11 grew at 13-42 °C (optimum, 30-35 °C) and pH 6.5-9.0 (optimum, 7.0-7.5). No additio...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2018-02, Vol.68 (2), p.675-680 |
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| creator | Subhash, Y Lee, Sang-Seob |
| description | Two dark pink pigmented bacterial strains (M3
and M11) were isolated from crude oil contaminated desert sand from Kuwait. Both strains were Gram-stain-negative and small-rod to oval-shaped bacteria. Strains M3
and M11 grew at 13-42 °C (optimum, 30-35 °C) and pH 6.5-9.0 (optimum, 7.0-7.5). No additional NaCl was required for the growth of both strains. The genomic DNA G+C content of strains M3
and M11 were 69.5 and 69.0 mol%, respectively. Both strains were closely related and the mean DNA-DNA hybridization value was 92±1 %. 16S rRNA gene sequence comparisons of both strains indicated that they belong to the genus Roseomonas. Strains M3
and M11 had a sequence similarity of 97.3 and 97.4 % with Roseomonas oryzae JC288
, respectively. Both strains had 5 %) were identified as C18 : 1ω6c/C18 : 1ω7c, C16 : 1ω6c/C16 : 1ω7c and C16 : 0 in both strains. Both strains showed diphosphatidylglycerol, phosphatidylglycerol, phosphatidyl-ethanolamine, phosphatidylcholine and unidentified glycolipid as major polar lipids. Based on distinct phenotypic, genotypic and phylogenetic differences from the previously described taxa, we propose the classification of strains M3
and M11 as representative of a novel species in the genus Roseomonas, for which the name Roseomonas deserti sp. nov. is suggested. The type strain is M3
(=KEMB 2255-459
=JCM 31275
). |
| doi_str_mv | 10.1099/ijsem.0.002565 |
| format | Article |
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and M11) were isolated from crude oil contaminated desert sand from Kuwait. Both strains were Gram-stain-negative and small-rod to oval-shaped bacteria. Strains M3
and M11 grew at 13-42 °C (optimum, 30-35 °C) and pH 6.5-9.0 (optimum, 7.0-7.5). No additional NaCl was required for the growth of both strains. The genomic DNA G+C content of strains M3
and M11 were 69.5 and 69.0 mol%, respectively. Both strains were closely related and the mean DNA-DNA hybridization value was 92±1 %. 16S rRNA gene sequence comparisons of both strains indicated that they belong to the genus Roseomonas. Strains M3
and M11 had a sequence similarity of 97.3 and 97.4 % with Roseomonas oryzae JC288
, respectively. Both strains had <97 % 16S rRNA gene sequence similarity with other members of the genus Roseomonas. Strain M3
showed 18±2 and 13±2 % reassociation (based on DNA-DNA hybridization) with R. oryzae KCTC 42542
and Roseomonas cervicalis KACC 11686
, respectively. The major cellular fatty acids (>5 %) were identified as C18 : 1ω6c/C18 : 1ω7c, C16 : 1ω6c/C16 : 1ω7c and C16 : 0 in both strains. Both strains showed diphosphatidylglycerol, phosphatidylglycerol, phosphatidyl-ethanolamine, phosphatidylcholine and unidentified glycolipid as major polar lipids. Based on distinct phenotypic, genotypic and phylogenetic differences from the previously described taxa, we propose the classification of strains M3
and M11 as representative of a novel species in the genus Roseomonas, for which the name Roseomonas deserti sp. nov. is suggested. The type strain is M3
(=KEMB 2255-459
=JCM 31275
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and M11) were isolated from crude oil contaminated desert sand from Kuwait. Both strains were Gram-stain-negative and small-rod to oval-shaped bacteria. Strains M3
and M11 grew at 13-42 °C (optimum, 30-35 °C) and pH 6.5-9.0 (optimum, 7.0-7.5). No additional NaCl was required for the growth of both strains. The genomic DNA G+C content of strains M3
and M11 were 69.5 and 69.0 mol%, respectively. Both strains were closely related and the mean DNA-DNA hybridization value was 92±1 %. 16S rRNA gene sequence comparisons of both strains indicated that they belong to the genus Roseomonas. Strains M3
and M11 had a sequence similarity of 97.3 and 97.4 % with Roseomonas oryzae JC288
, respectively. Both strains had <97 % 16S rRNA gene sequence similarity with other members of the genus Roseomonas. Strain M3
showed 18±2 and 13±2 % reassociation (based on DNA-DNA hybridization) with R. oryzae KCTC 42542
and Roseomonas cervicalis KACC 11686
, respectively. The major cellular fatty acids (>5 %) were identified as C18 : 1ω6c/C18 : 1ω7c, C16 : 1ω6c/C16 : 1ω7c and C16 : 0 in both strains. Both strains showed diphosphatidylglycerol, phosphatidylglycerol, phosphatidyl-ethanolamine, phosphatidylcholine and unidentified glycolipid as major polar lipids. Based on distinct phenotypic, genotypic and phylogenetic differences from the previously described taxa, we propose the classification of strains M3
and M11 as representative of a novel species in the genus Roseomonas, for which the name Roseomonas deserti sp. nov. is suggested. The type strain is M3
(=KEMB 2255-459
=JCM 31275
).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Desert Climate</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Glycolipids - chemistry</subject><subject>Kuwait</subject><subject>Methylobacteriaceae - classification</subject><subject>Methylobacteriaceae - genetics</subject><subject>Methylobacteriaceae - isolation & purification</subject><subject>Nucleic Acid Hybridization</subject><subject>Petroleum - microbiology</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>Pigmentation</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Silicon Dioxide</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kM1LxDAQxYMo7rp69Sg5erB1krRJc5Rl_YAVQfQcss0UurTNmrSC_711u-5phpn3HrwfIdcMUgZa39fbiG0KKQDPZX5C5iyTMslBZKfHncsZuYhxCzAeAM7JjGtRFHkm5-T13Uf0re9spA4jhr6mcZfSzn-nd7SOvrE9OloF39IyDA6prxta-q63bd3tf5ONRtu5S3JW2Sbi1WEuyOfj6mP5nKzfnl6WD-ukFCLvEymKTHGnmVUFaAWV0pnLS6uFVMppl7GCb5SQQjCQqmQKMWecc3SZrpjUYkFup9xd8F8Dxt60dSyxaWyHfoiGaS3GhlLBKE0naRl8jAErswt1a8OPYWD-EJo9QgNmQjgabg7Zw6ZFd5T_MxO_qWdrrw</recordid><startdate>201802</startdate><enddate>201802</enddate><creator>Subhash, Y</creator><creator>Lee, Sang-Seob</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201802</creationdate><title>Roseomonas deserti sp. nov., isolated from crude oil contaminated desert sand</title><author>Subhash, Y ; Lee, Sang-Seob</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-638472d91a780970f794d5ca93677d9d4182b736331067c17ee51222ed49f1693</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Desert Climate</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Glycolipids - chemistry</topic><topic>Kuwait</topic><topic>Methylobacteriaceae - classification</topic><topic>Methylobacteriaceae - genetics</topic><topic>Methylobacteriaceae - isolation & purification</topic><topic>Nucleic Acid Hybridization</topic><topic>Petroleum - microbiology</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>Pigmentation</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Silicon Dioxide</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Subhash, Y</creatorcontrib><creatorcontrib>Lee, Sang-Seob</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Subhash, Y</au><au>Lee, Sang-Seob</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Roseomonas deserti sp. nov., isolated from crude oil contaminated desert sand</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2018-02</date><risdate>2018</risdate><volume>68</volume><issue>2</issue><spage>675</spage><epage>680</epage><pages>675-680</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Two dark pink pigmented bacterial strains (M3
and M11) were isolated from crude oil contaminated desert sand from Kuwait. Both strains were Gram-stain-negative and small-rod to oval-shaped bacteria. Strains M3
and M11 grew at 13-42 °C (optimum, 30-35 °C) and pH 6.5-9.0 (optimum, 7.0-7.5). No additional NaCl was required for the growth of both strains. The genomic DNA G+C content of strains M3
and M11 were 69.5 and 69.0 mol%, respectively. Both strains were closely related and the mean DNA-DNA hybridization value was 92±1 %. 16S rRNA gene sequence comparisons of both strains indicated that they belong to the genus Roseomonas. Strains M3
and M11 had a sequence similarity of 97.3 and 97.4 % with Roseomonas oryzae JC288
, respectively. Both strains had <97 % 16S rRNA gene sequence similarity with other members of the genus Roseomonas. Strain M3
showed 18±2 and 13±2 % reassociation (based on DNA-DNA hybridization) with R. oryzae KCTC 42542
and Roseomonas cervicalis KACC 11686
, respectively. The major cellular fatty acids (>5 %) were identified as C18 : 1ω6c/C18 : 1ω7c, C16 : 1ω6c/C16 : 1ω7c and C16 : 0 in both strains. Both strains showed diphosphatidylglycerol, phosphatidylglycerol, phosphatidyl-ethanolamine, phosphatidylcholine and unidentified glycolipid as major polar lipids. Based on distinct phenotypic, genotypic and phylogenetic differences from the previously described taxa, we propose the classification of strains M3
and M11 as representative of a novel species in the genus Roseomonas, for which the name Roseomonas deserti sp. nov. is suggested. The type strain is M3
(=KEMB 2255-459
=JCM 31275
).</abstract><cop>England</cop><pmid>29388546</pmid><doi>10.1099/ijsem.0.002565</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | International journal of systematic and evolutionary microbiology, 2018-02, Vol.68 (2), p.675-680 |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition Desert Climate DNA, Bacterial - genetics Fatty Acids - chemistry Glycolipids - chemistry Kuwait Methylobacteriaceae - classification Methylobacteriaceae - genetics Methylobacteriaceae - isolation & purification Nucleic Acid Hybridization Petroleum - microbiology Phospholipids - chemistry Phylogeny Pigmentation RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Silicon Dioxide |
| title | Roseomonas deserti sp. nov., isolated from crude oil contaminated desert sand |
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