Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL
Key message Four QTLs and an epistatic interaction were associated with disease severity in response to inoculation with Fusarium oxysporum f. sp. melonis race 1 in a recombinant inbred line population of melon. The USDA Cucumis melo inbred line, MR-1, harbors a wealth of alleles associated with res...
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| Veröffentlicht in: | Theoretical and applied genetics 2018-04, Vol.131 (4), p.829-837 |
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| creator | Branham, Sandra E. Levi, Amnon Katawczik, Melanie Fei, Zhangjun Wechter, W. Patrick |
| description | Key message
Four QTLs and an epistatic interaction were associated with disease severity in response to inoculation with
Fusarium oxysporum
f. sp.
melonis
race 1 in a recombinant inbred line population of melon.
The USDA
Cucumis melo
inbred line, MR-1, harbors a wealth of alleles associated with resistance to several major diseases of melon, including powdery mildew, downy mildew, Alternaria leaf blight, and Fusarium wilt. MR-1 was crossed to an Israeli cultivar, Ananas Yok’neam, which is susceptible to all of these diseases, to generate a recombinant inbred line (RIL) population of 172 lines. In this study, the RIL population was genotyped to construct an ultra-dense genetic linkage map with 5663 binned SNPs anchored to the
C. melo
genome and exhibits the overall high quality of the assembly. The utility of the densely genotyped population was demonstrated through QTL mapping of a well-studied trait, resistance to Fusarium wilt caused by
Fusarium oxysporum
f. sp.
melonis
(
Fom
) race 1. A major QTL co-located with the previously validated resistance gene
Fom
-
2
. In addition, three minor QTLs and an epistatic interaction contributing to
Fom
race 1 resistance were identified. The MR-1 × AY RIL population provides a valuable resource for future QTL mapping studies and marker-assisted selection of disease resistance in melon. |
| doi_str_mv | 10.1007/s00122-017-3039-5 |
| format | Article |
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Four QTLs and an epistatic interaction were associated with disease severity in response to inoculation with
Fusarium oxysporum
f. sp.
melonis
race 1 in a recombinant inbred line population of melon.
The USDA
Cucumis melo
inbred line, MR-1, harbors a wealth of alleles associated with resistance to several major diseases of melon, including powdery mildew, downy mildew, Alternaria leaf blight, and Fusarium wilt. MR-1 was crossed to an Israeli cultivar, Ananas Yok’neam, which is susceptible to all of these diseases, to generate a recombinant inbred line (RIL) population of 172 lines. In this study, the RIL population was genotyped to construct an ultra-dense genetic linkage map with 5663 binned SNPs anchored to the
C. melo
genome and exhibits the overall high quality of the assembly. The utility of the densely genotyped population was demonstrated through QTL mapping of a well-studied trait, resistance to Fusarium wilt caused by
Fusarium oxysporum
f. sp.
melonis
(
Fom
) race 1. A major QTL co-located with the previously validated resistance gene
Fom
-
2
. In addition, three minor QTLs and an epistatic interaction contributing to
Fom
race 1 resistance were identified. The MR-1 × AY RIL population provides a valuable resource for future QTL mapping studies and marker-assisted selection of disease resistance in melon.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-017-3039-5</identifier><identifier>PMID: 29372283</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agriculture ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Chromosome Mapping ; Cucumis melo ; Cucumis melo - genetics ; Cucumis melo - microbiology ; Disease resistance ; Disease resistance (Plants) ; Disease Resistance - genetics ; Diseases and pests ; Downy mildew ; Epistasis ; Epistasis, Genetic ; Fusarium ; Fusarium oxysporum ; Gene mapping ; Genetic aspects ; Genetic Linkage ; Genomes ; Genotype ; Genotype & phenotype ; Inbreeding ; Inoculation ; Leaf blight ; Life Sciences ; Marker-assisted selection ; Muskmelon ; Original Article ; Phenotype ; Plant Biochemistry ; Plant Breeding/Biotechnology ; Plant Diseases - genetics ; Plant Diseases - microbiology ; Plant Genetics and Genomics ; Polymorphism, Single Nucleotide ; Population ; Population studies ; Powdery mildew ; Quantitative Trait Loci ; Single-nucleotide polymorphism ; Wilt</subject><ispartof>Theoretical and applied genetics, 2018-04, Vol.131 (4), p.829-837</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature (Outside the USA) 2018</rights><rights>COPYRIGHT 2018 Springer</rights><rights>Theoretical and Applied Genetics is a copyright of Springer, (2018). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c439t-ac44154246d55eecab843c1da4c1af6555eb33cd9345e2740c516e646bcc9d6b3</citedby><cites>FETCH-LOGICAL-c439t-ac44154246d55eecab843c1da4c1af6555eb33cd9345e2740c516e646bcc9d6b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-017-3039-5$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-017-3039-5$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51298</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29372283$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Branham, Sandra E.</creatorcontrib><creatorcontrib>Levi, Amnon</creatorcontrib><creatorcontrib>Katawczik, Melanie</creatorcontrib><creatorcontrib>Fei, Zhangjun</creatorcontrib><creatorcontrib>Wechter, W. Patrick</creatorcontrib><title>Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><addtitle>Theor Appl Genet</addtitle><description>Key message
Four QTLs and an epistatic interaction were associated with disease severity in response to inoculation with
Fusarium oxysporum
f. sp.
melonis
race 1 in a recombinant inbred line population of melon.
The USDA
Cucumis melo
inbred line, MR-1, harbors a wealth of alleles associated with resistance to several major diseases of melon, including powdery mildew, downy mildew, Alternaria leaf blight, and Fusarium wilt. MR-1 was crossed to an Israeli cultivar, Ananas Yok’neam, which is susceptible to all of these diseases, to generate a recombinant inbred line (RIL) population of 172 lines. In this study, the RIL population was genotyped to construct an ultra-dense genetic linkage map with 5663 binned SNPs anchored to the
C. melo
genome and exhibits the overall high quality of the assembly. The utility of the densely genotyped population was demonstrated through QTL mapping of a well-studied trait, resistance to Fusarium wilt caused by
Fusarium oxysporum
f. sp.
melonis
(
Fom
) race 1. A major QTL co-located with the previously validated resistance gene
Fom
-
2
. In addition, three minor QTLs and an epistatic interaction contributing to
Fom
race 1 resistance were identified. The MR-1 × AY RIL population provides a valuable resource for future QTL mapping studies and marker-assisted selection of disease resistance in melon.</description><subject>Agriculture</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chromosome Mapping</subject><subject>Cucumis melo</subject><subject>Cucumis melo - genetics</subject><subject>Cucumis melo - microbiology</subject><subject>Disease resistance</subject><subject>Disease resistance (Plants)</subject><subject>Disease Resistance - genetics</subject><subject>Diseases and pests</subject><subject>Downy mildew</subject><subject>Epistasis</subject><subject>Epistasis, Genetic</subject><subject>Fusarium</subject><subject>Fusarium oxysporum</subject><subject>Gene mapping</subject><subject>Genetic aspects</subject><subject>Genetic Linkage</subject><subject>Genomes</subject><subject>Genotype</subject><subject>Genotype & phenotype</subject><subject>Inbreeding</subject><subject>Inoculation</subject><subject>Leaf blight</subject><subject>Life Sciences</subject><subject>Marker-assisted selection</subject><subject>Muskmelon</subject><subject>Original Article</subject><subject>Phenotype</subject><subject>Plant Biochemistry</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Diseases - genetics</subject><subject>Plant Diseases - microbiology</subject><subject>Plant Genetics and Genomics</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Population</subject><subject>Population studies</subject><subject>Powdery mildew</subject><subject>Quantitative Trait Loci</subject><subject>Single-nucleotide polymorphism</subject><subject>Wilt</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kl2L1DAUhoso7rj6A7yRgDe7YGo-28nlMrgqDIiwXoc0PZ3J0iY1acH5Qf5P0-2uXyi5SHLyvG_OgbcoXlJSUkLqt4kQyhgmtMaccIXlo2JDBWeYMcEeFxtCBMGyluyseJbSLSGEScKfFmdM8ZqxLd8U33fBpynOdnLBo9Ahgw7gwwDYeHsMEdo36OgOR9yCT246La8wOYsGM6IuRDRAn4UXu9nOg0t3V7QvL5HxLXJZNLnOWfPgfj0nE908oPDtlMYQ86krURrL1ScbRGMBURQhuTTlHgB9vtk_L550pk_w4n4_L75cv7vZfcD7T-8_7q722AquJmysEFQKJqpWSgBrmq3glrZGWGq6SuZiw7ltFRcSWC2IlbSCSlSNtaqtGn5eXKy-YwxfZ0iTzjNZ6HvjIcxJU6UYoUQxltHXf6G3YY4-d7dQ-QMpOf9FHUwP2vkuTHnAxVRfSb5lQjGuMlX-g8qrhcHZ4KFzuf6HgK4CG0NKETo9RjeYeNKU6CUaeo2GztHQSzS0zJpX9w3PzQDtT8VDFjLAViDlJ3-A-NtE_3X9AULfwtM</recordid><startdate>20180401</startdate><enddate>20180401</enddate><creator>Branham, Sandra E.</creator><creator>Levi, Amnon</creator><creator>Katawczik, Melanie</creator><creator>Fei, Zhangjun</creator><creator>Wechter, W. Patrick</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20180401</creationdate><title>Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL</title><author>Branham, Sandra E. ; Levi, Amnon ; Katawczik, Melanie ; Fei, Zhangjun ; Wechter, W. Patrick</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c439t-ac44154246d55eecab843c1da4c1af6555eb33cd9345e2740c516e646bcc9d6b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Agriculture</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chromosome Mapping</topic><topic>Cucumis melo</topic><topic>Cucumis melo - genetics</topic><topic>Cucumis melo - microbiology</topic><topic>Disease resistance</topic><topic>Disease resistance (Plants)</topic><topic>Disease Resistance - genetics</topic><topic>Diseases and pests</topic><topic>Downy mildew</topic><topic>Epistasis</topic><topic>Epistasis, Genetic</topic><topic>Fusarium</topic><topic>Fusarium oxysporum</topic><topic>Gene mapping</topic><topic>Genetic aspects</topic><topic>Genetic Linkage</topic><topic>Genomes</topic><topic>Genotype</topic><topic>Genotype & phenotype</topic><topic>Inbreeding</topic><topic>Inoculation</topic><topic>Leaf blight</topic><topic>Life Sciences</topic><topic>Marker-assisted selection</topic><topic>Muskmelon</topic><topic>Original Article</topic><topic>Phenotype</topic><topic>Plant Biochemistry</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Diseases - genetics</topic><topic>Plant Diseases - microbiology</topic><topic>Plant Genetics and Genomics</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Population</topic><topic>Population studies</topic><topic>Powdery mildew</topic><topic>Quantitative Trait Loci</topic><topic>Single-nucleotide polymorphism</topic><topic>Wilt</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Branham, Sandra E.</creatorcontrib><creatorcontrib>Levi, Amnon</creatorcontrib><creatorcontrib>Katawczik, Melanie</creatorcontrib><creatorcontrib>Fei, Zhangjun</creatorcontrib><creatorcontrib>Wechter, W. 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Patrick</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><addtitle>Theor Appl Genet</addtitle><date>2018-04-01</date><risdate>2018</risdate><volume>131</volume><issue>4</issue><spage>829</spage><epage>837</epage><pages>829-837</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>Key message
Four QTLs and an epistatic interaction were associated with disease severity in response to inoculation with
Fusarium oxysporum
f. sp.
melonis
race 1 in a recombinant inbred line population of melon.
The USDA
Cucumis melo
inbred line, MR-1, harbors a wealth of alleles associated with resistance to several major diseases of melon, including powdery mildew, downy mildew, Alternaria leaf blight, and Fusarium wilt. MR-1 was crossed to an Israeli cultivar, Ananas Yok’neam, which is susceptible to all of these diseases, to generate a recombinant inbred line (RIL) population of 172 lines. In this study, the RIL population was genotyped to construct an ultra-dense genetic linkage map with 5663 binned SNPs anchored to the
C. melo
genome and exhibits the overall high quality of the assembly. The utility of the densely genotyped population was demonstrated through QTL mapping of a well-studied trait, resistance to Fusarium wilt caused by
Fusarium oxysporum
f. sp.
melonis
(
Fom
) race 1. A major QTL co-located with the previously validated resistance gene
Fom
-
2
. In addition, three minor QTLs and an epistatic interaction contributing to
Fom
race 1 resistance were identified. The MR-1 × AY RIL population provides a valuable resource for future QTL mapping studies and marker-assisted selection of disease resistance in melon.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>29372283</pmid><doi>10.1007/s00122-017-3039-5</doi><tpages>9</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0040-5752 |
| ispartof | Theoretical and applied genetics, 2018-04, Vol.131 (4), p.829-837 |
| issn | 0040-5752 1432-2242 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1992010922 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Agriculture Biochemistry Biomedical and Life Sciences Biotechnology Chromosome Mapping Cucumis melo Cucumis melo - genetics Cucumis melo - microbiology Disease resistance Disease resistance (Plants) Disease Resistance - genetics Diseases and pests Downy mildew Epistasis Epistasis, Genetic Fusarium Fusarium oxysporum Gene mapping Genetic aspects Genetic Linkage Genomes Genotype Genotype & phenotype Inbreeding Inoculation Leaf blight Life Sciences Marker-assisted selection Muskmelon Original Article Phenotype Plant Biochemistry Plant Breeding/Biotechnology Plant Diseases - genetics Plant Diseases - microbiology Plant Genetics and Genomics Polymorphism, Single Nucleotide Population Population studies Powdery mildew Quantitative Trait Loci Single-nucleotide polymorphism Wilt |
| title | Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL |
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