A synthetic pathway for the production of 2-hydroxyisovaleric acid in Escherichia coli
Synthetic biology, encompassing the design and construction of novel artificial biological pathways and organisms and the redesign of existing natural biological systems, is rapidly expanding the number of applications for which biological systems can play an integral role. In the context of chemica...
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creator | Cheong, Seokjung Clomburg, James M. Gonzalez, Ramon |
description | Synthetic biology, encompassing the design and construction of novel artificial biological pathways and organisms and the redesign of existing natural biological systems, is rapidly expanding the number of applications for which biological systems can play an integral role. In the context of chemical production, the combination of synthetic biology and metabolic engineering approaches continues to unlock the ability to biologically produce novel and complex molecules from a variety of feedstocks. Here, we utilize a synthetic approach to design and build a pathway to produce 2-hydroxyisovaleric acid in
Escherichia coli
and demonstrate how pathway design can be supplemented with metabolic engineering approaches to improve pathway performance from various carbon sources. Drawing inspiration from the native pathway for the synthesis of the 5-carbon amino acid
l
-valine, we exploit the decarboxylative condensation of two molecules of pyruvate, with subsequent reduction and dehydration reactions enabling the synthesis of 2-hydroxyisovaleric acid. Key to our approach was the utilization of an acetolactate synthase which minimized kinetic and regulatory constraints to ensure sufficient flux entering the pathway. Critical host modifications enabling maximum product synthesis from either glycerol or glucose were then examined, with the varying degree of reduction of these carbons sources playing a major role in the required host background. Through these engineering efforts, the designed pathway produced 6.2 g/L 2-hydroxyisovaleric acid from glycerol at 58% of maximum theoretical yield and 7.8 g/L 2-hydroxyisovaleric acid from glucose at 73% of maximum theoretical yield. These results demonstrate how the combination of synthetic biology and metabolic engineering approaches can facilitate bio-based chemical production. |
doi_str_mv | 10.1007/s10295-018-2005-9 |
format | Article |
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Escherichia coli
and demonstrate how pathway design can be supplemented with metabolic engineering approaches to improve pathway performance from various carbon sources. Drawing inspiration from the native pathway for the synthesis of the 5-carbon amino acid
l
-valine, we exploit the decarboxylative condensation of two molecules of pyruvate, with subsequent reduction and dehydration reactions enabling the synthesis of 2-hydroxyisovaleric acid. Key to our approach was the utilization of an acetolactate synthase which minimized kinetic and regulatory constraints to ensure sufficient flux entering the pathway. Critical host modifications enabling maximum product synthesis from either glycerol or glucose were then examined, with the varying degree of reduction of these carbons sources playing a major role in the required host background. Through these engineering efforts, the designed pathway produced 6.2 g/L 2-hydroxyisovaleric acid from glycerol at 58% of maximum theoretical yield and 7.8 g/L 2-hydroxyisovaleric acid from glucose at 73% of maximum theoretical yield. These results demonstrate how the combination of synthetic biology and metabolic engineering approaches can facilitate bio-based chemical production.</description><identifier>ISSN: 1367-5435</identifier><identifier>EISSN: 1476-5535</identifier><identifier>DOI: 10.1007/s10295-018-2005-9</identifier><identifier>PMID: 29330665</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Acetolactate synthase ; Amino acids ; Bacteria ; Biochemistry ; Bioinformatics ; Biological effects ; Biology ; Biomedical and Life Sciences ; Biotechnology ; Carbon sources ; Chemical synthesis ; Condensates ; Dehydration ; Design ; Design engineering ; E coli ; Engineering ; Escherichia coli ; Escherichia coli - genetics ; Escherichia coli - metabolism ; Escherichia coli Proteins - metabolism ; Genetic Engineering ; Glucose ; Glycerol ; Glycerol - metabolism ; Inorganic Chemistry ; Kinetics ; Life Sciences ; Metabolic engineering ; Metabolic Engineering - methods ; Metabolic Engineering and Synthetic Biology - Original Paper ; Metabolism ; Microbiology ; Pyruvic acid ; Pyruvic Acid - metabolism ; Redesign ; Reduction ; Synthetic Biology ; Valerates - metabolism ; Valine</subject><ispartof>Journal of industrial microbiology & biotechnology, 2018-07, Vol.45 (7), p.579-588</ispartof><rights>Society for Industrial Microbiology and Biotechnology 2018</rights><rights>Journal of Industrial Microbiology & Biotechnology is a copyright of Springer, (2018). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c372t-da816bc7c2d22b824e74f99f6016365f20de3dd627e9ccd403e5e71a1399a3573</citedby><cites>FETCH-LOGICAL-c372t-da816bc7c2d22b824e74f99f6016365f20de3dd627e9ccd403e5e71a1399a3573</cites><orcidid>0000-0003-4797-6580</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10295-018-2005-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10295-018-2005-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29330665$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cheong, Seokjung</creatorcontrib><creatorcontrib>Clomburg, James M.</creatorcontrib><creatorcontrib>Gonzalez, Ramon</creatorcontrib><title>A synthetic pathway for the production of 2-hydroxyisovaleric acid in Escherichia coli</title><title>Journal of industrial microbiology & biotechnology</title><addtitle>J Ind Microbiol Biotechnol</addtitle><addtitle>J Ind Microbiol Biotechnol</addtitle><description>Synthetic biology, encompassing the design and construction of novel artificial biological pathways and organisms and the redesign of existing natural biological systems, is rapidly expanding the number of applications for which biological systems can play an integral role. In the context of chemical production, the combination of synthetic biology and metabolic engineering approaches continues to unlock the ability to biologically produce novel and complex molecules from a variety of feedstocks. Here, we utilize a synthetic approach to design and build a pathway to produce 2-hydroxyisovaleric acid in
Escherichia coli
and demonstrate how pathway design can be supplemented with metabolic engineering approaches to improve pathway performance from various carbon sources. Drawing inspiration from the native pathway for the synthesis of the 5-carbon amino acid
l
-valine, we exploit the decarboxylative condensation of two molecules of pyruvate, with subsequent reduction and dehydration reactions enabling the synthesis of 2-hydroxyisovaleric acid. Key to our approach was the utilization of an acetolactate synthase which minimized kinetic and regulatory constraints to ensure sufficient flux entering the pathway. Critical host modifications enabling maximum product synthesis from either glycerol or glucose were then examined, with the varying degree of reduction of these carbons sources playing a major role in the required host background. Through these engineering efforts, the designed pathway produced 6.2 g/L 2-hydroxyisovaleric acid from glycerol at 58% of maximum theoretical yield and 7.8 g/L 2-hydroxyisovaleric acid from glucose at 73% of maximum theoretical yield. These results demonstrate how the combination of synthetic biology and metabolic engineering approaches can facilitate bio-based chemical production.</description><subject>Acetolactate synthase</subject><subject>Amino acids</subject><subject>Bacteria</subject><subject>Biochemistry</subject><subject>Bioinformatics</subject><subject>Biological effects</subject><subject>Biology</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Carbon sources</subject><subject>Chemical synthesis</subject><subject>Condensates</subject><subject>Dehydration</subject><subject>Design</subject><subject>Design engineering</subject><subject>E coli</subject><subject>Engineering</subject><subject>Escherichia coli</subject><subject>Escherichia coli - genetics</subject><subject>Escherichia coli - metabolism</subject><subject>Escherichia coli Proteins - metabolism</subject><subject>Genetic Engineering</subject><subject>Glucose</subject><subject>Glycerol</subject><subject>Glycerol - metabolism</subject><subject>Inorganic Chemistry</subject><subject>Kinetics</subject><subject>Life Sciences</subject><subject>Metabolic engineering</subject><subject>Metabolic Engineering - methods</subject><subject>Metabolic Engineering and Synthetic Biology - Original Paper</subject><subject>Metabolism</subject><subject>Microbiology</subject><subject>Pyruvic acid</subject><subject>Pyruvic Acid - metabolism</subject><subject>Redesign</subject><subject>Reduction</subject><subject>Synthetic Biology</subject><subject>Valerates - metabolism</subject><subject>Valine</subject><issn>1367-5435</issn><issn>1476-5535</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp1kMtKxDAUhoMo3h_AjQTcuInm0iTNUmS8gOBG3YZMktpIpxmTVu3bm2FURHB1Diff-XP4ADgi-IxgLM8zwVRxhEmNKMYcqQ2wSyopEOeMb5aeCYl4xfgO2Mv5BRdGSroNdqhiDAvBd8HTBcxTP7R-CBYuzdC-mwk2McEygssU3WiHEHsYG0hRO7kUP6aQ45vpfCobxgYHQw9n2barQRsMtLELB2CrMV32h191HzxezR4ub9Dd_fXt5cUdskzSATlTEzG30lJH6bymlZdVo1QjMBFM8IZi55lzgkqvrHUVZp57SQxhShnGJdsHp-vccurr6POgFyFb33Wm93HMmqhacVkzoQp68gd9iWPqy3WFUlSqihFSKLKmbIo5J9_oZQoLkyZNsF5J12vpukjXK-l6lXz8lTzOF979bHxbLgBdA7k89c8-_fr639RPdAaLwg</recordid><startdate>20180701</startdate><enddate>20180701</enddate><creator>Cheong, Seokjung</creator><creator>Clomburg, James M.</creator><creator>Gonzalez, Ramon</creator><general>Springer International Publishing</general><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QR</scope><scope>7T7</scope><scope>7WY</scope><scope>7WZ</scope><scope>7X7</scope><scope>7XB</scope><scope>87Z</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8FL</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BEZIV</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FRNLG</scope><scope>FYUFA</scope><scope>F~G</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K60</scope><scope>K6~</scope><scope>K9.</scope><scope>L.-</scope><scope>LK8</scope><scope>M0C</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQBIZ</scope><scope>PQBZA</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-4797-6580</orcidid></search><sort><creationdate>20180701</creationdate><title>A synthetic pathway for the production of 2-hydroxyisovaleric acid in Escherichia coli</title><author>Cheong, Seokjung ; Clomburg, James M. ; Gonzalez, Ramon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c372t-da816bc7c2d22b824e74f99f6016365f20de3dd627e9ccd403e5e71a1399a3573</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Acetolactate synthase</topic><topic>Amino acids</topic><topic>Bacteria</topic><topic>Biochemistry</topic><topic>Bioinformatics</topic><topic>Biological effects</topic><topic>Biology</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Carbon sources</topic><topic>Chemical synthesis</topic><topic>Condensates</topic><topic>Dehydration</topic><topic>Design</topic><topic>Design engineering</topic><topic>E coli</topic><topic>Engineering</topic><topic>Escherichia coli</topic><topic>Escherichia coli - genetics</topic><topic>Escherichia coli - metabolism</topic><topic>Escherichia coli Proteins - metabolism</topic><topic>Genetic Engineering</topic><topic>Glucose</topic><topic>Glycerol</topic><topic>Glycerol - metabolism</topic><topic>Inorganic Chemistry</topic><topic>Kinetics</topic><topic>Life Sciences</topic><topic>Metabolic engineering</topic><topic>Metabolic Engineering - methods</topic><topic>Metabolic Engineering and Synthetic Biology - Original Paper</topic><topic>Metabolism</topic><topic>Microbiology</topic><topic>Pyruvic acid</topic><topic>Pyruvic Acid - metabolism</topic><topic>Redesign</topic><topic>Reduction</topic><topic>Synthetic Biology</topic><topic>Valerates - metabolism</topic><topic>Valine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cheong, Seokjung</creatorcontrib><creatorcontrib>Clomburg, James M.</creatorcontrib><creatorcontrib>Gonzalez, Ramon</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Chemoreception Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Access via ABI/INFORM (ProQuest)</collection><collection>ABI/INFORM Global (PDF only)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ABI/INFORM Global (Alumni Edition)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ABI/INFORM Collection (Alumni Edition)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Business Premium Collection</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Business Premium Collection (Alumni)</collection><collection>Health Research Premium Collection</collection><collection>ABI/INFORM Global (Corporate)</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Business Collection (Alumni Edition)</collection><collection>ProQuest Business Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ABI/INFORM Professional Advanced</collection><collection>ProQuest Biological Science Collection</collection><collection>ABI/INFORM Global</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Business</collection><collection>ProQuest One Business (Alumni)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of industrial microbiology & biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cheong, Seokjung</au><au>Clomburg, James M.</au><au>Gonzalez, Ramon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A synthetic pathway for the production of 2-hydroxyisovaleric acid in Escherichia coli</atitle><jtitle>Journal of industrial microbiology & biotechnology</jtitle><stitle>J Ind Microbiol Biotechnol</stitle><addtitle>J Ind Microbiol Biotechnol</addtitle><date>2018-07-01</date><risdate>2018</risdate><volume>45</volume><issue>7</issue><spage>579</spage><epage>588</epage><pages>579-588</pages><issn>1367-5435</issn><eissn>1476-5535</eissn><abstract>Synthetic biology, encompassing the design and construction of novel artificial biological pathways and organisms and the redesign of existing natural biological systems, is rapidly expanding the number of applications for which biological systems can play an integral role. In the context of chemical production, the combination of synthetic biology and metabolic engineering approaches continues to unlock the ability to biologically produce novel and complex molecules from a variety of feedstocks. Here, we utilize a synthetic approach to design and build a pathway to produce 2-hydroxyisovaleric acid in
Escherichia coli
and demonstrate how pathway design can be supplemented with metabolic engineering approaches to improve pathway performance from various carbon sources. Drawing inspiration from the native pathway for the synthesis of the 5-carbon amino acid
l
-valine, we exploit the decarboxylative condensation of two molecules of pyruvate, with subsequent reduction and dehydration reactions enabling the synthesis of 2-hydroxyisovaleric acid. Key to our approach was the utilization of an acetolactate synthase which minimized kinetic and regulatory constraints to ensure sufficient flux entering the pathway. Critical host modifications enabling maximum product synthesis from either glycerol or glucose were then examined, with the varying degree of reduction of these carbons sources playing a major role in the required host background. Through these engineering efforts, the designed pathway produced 6.2 g/L 2-hydroxyisovaleric acid from glycerol at 58% of maximum theoretical yield and 7.8 g/L 2-hydroxyisovaleric acid from glucose at 73% of maximum theoretical yield. These results demonstrate how the combination of synthetic biology and metabolic engineering approaches can facilitate bio-based chemical production.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>29330665</pmid><doi>10.1007/s10295-018-2005-9</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0003-4797-6580</orcidid></addata></record> |
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subjects | Acetolactate synthase Amino acids Bacteria Biochemistry Bioinformatics Biological effects Biology Biomedical and Life Sciences Biotechnology Carbon sources Chemical synthesis Condensates Dehydration Design Design engineering E coli Engineering Escherichia coli Escherichia coli - genetics Escherichia coli - metabolism Escherichia coli Proteins - metabolism Genetic Engineering Glucose Glycerol Glycerol - metabolism Inorganic Chemistry Kinetics Life Sciences Metabolic engineering Metabolic Engineering - methods Metabolic Engineering and Synthetic Biology - Original Paper Metabolism Microbiology Pyruvic acid Pyruvic Acid - metabolism Redesign Reduction Synthetic Biology Valerates - metabolism Valine |
title | A synthetic pathway for the production of 2-hydroxyisovaleric acid in Escherichia coli |
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