GlycoDomainViewer: a bioinformatics tool for contextual exploration of glycoproteomes
Abstract The GlycoDomainViewer is a bioinformatic tool to aid in the mining of glycoproteomic datasets from different sources and facilitate incorporation of glycosylation into studies of protein structure and function. We present a version 2.0 of GlycoDomainViewer incorporating a number of advanced...
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| Veröffentlicht in: | Glycobiology (Oxford) 2018-03, Vol.28 (3), p.131-136 |
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| container_title | Glycobiology (Oxford) |
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| creator | Joshi, Hiren J Jørgensen, Anja Schjoldager, Katrine T Halim, Adnan Dworkin, Leo A Steentoft, Catharina Wandall, Hans H Clausen, Henrik Vakhrushev, Sergey Y |
| description | Abstract
The GlycoDomainViewer is a bioinformatic tool to aid in the mining of glycoproteomic datasets from different sources and facilitate incorporation of glycosylation into studies of protein structure and function. We present a version 2.0 of GlycoDomainViewer incorporating a number of advanced features, which enhances visibility and accessibility of the wealth of glycoproteomic data being generated. The GlycoDomainViewer enables visual exploration of glycoproteomic data, incorporating information from recent N- and O-glycoproteome studies on human and animal cell lines and some organs and body fluids. The initial data comprises sites of glycosylation for N-linked, O-GalNAc, O-Fucose, O-Xyl, O-Mannose (in both human and yeast) and cytosolic O-GlcNAc type. The data made available via this tool will be regularly updated to improve the coverage of known glycosylation sites and datasets, reflecting the advances currently being made in characterization of glycoproteomes. The tool is available at https://glycodomain.glycomics.ku.dk. |
| doi_str_mv | 10.1093/glycob/cwx104 |
| format | Article |
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The GlycoDomainViewer is a bioinformatic tool to aid in the mining of glycoproteomic datasets from different sources and facilitate incorporation of glycosylation into studies of protein structure and function. We present a version 2.0 of GlycoDomainViewer incorporating a number of advanced features, which enhances visibility and accessibility of the wealth of glycoproteomic data being generated. The GlycoDomainViewer enables visual exploration of glycoproteomic data, incorporating information from recent N- and O-glycoproteome studies on human and animal cell lines and some organs and body fluids. The initial data comprises sites of glycosylation for N-linked, O-GalNAc, O-Fucose, O-Xyl, O-Mannose (in both human and yeast) and cytosolic O-GlcNAc type. The data made available via this tool will be regularly updated to improve the coverage of known glycosylation sites and datasets, reflecting the advances currently being made in characterization of glycoproteomes. The tool is available at https://glycodomain.glycomics.ku.dk.</description><identifier>ISSN: 0959-6658</identifier><identifier>EISSN: 1460-2423</identifier><identifier>DOI: 10.1093/glycob/cwx104</identifier><identifier>PMID: 29267884</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><ispartof>Glycobiology (Oxford), 2018-03, Vol.28 (3), p.131-136</ispartof><rights>The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018</rights><rights>The Author(s) 2017. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c431t-4f7fffe856237e35523d2a86f912a17080acaf02f3cb90351ae4b7eafb1622043</citedby><cites>FETCH-LOGICAL-c431t-4f7fffe856237e35523d2a86f912a17080acaf02f3cb90351ae4b7eafb1622043</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,1578,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29267884$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Joshi, Hiren J</creatorcontrib><creatorcontrib>Jørgensen, Anja</creatorcontrib><creatorcontrib>Schjoldager, Katrine T</creatorcontrib><creatorcontrib>Halim, Adnan</creatorcontrib><creatorcontrib>Dworkin, Leo A</creatorcontrib><creatorcontrib>Steentoft, Catharina</creatorcontrib><creatorcontrib>Wandall, Hans H</creatorcontrib><creatorcontrib>Clausen, Henrik</creatorcontrib><creatorcontrib>Vakhrushev, Sergey Y</creatorcontrib><title>GlycoDomainViewer: a bioinformatics tool for contextual exploration of glycoproteomes</title><title>Glycobiology (Oxford)</title><addtitle>Glycobiology</addtitle><description>Abstract
The GlycoDomainViewer is a bioinformatic tool to aid in the mining of glycoproteomic datasets from different sources and facilitate incorporation of glycosylation into studies of protein structure and function. We present a version 2.0 of GlycoDomainViewer incorporating a number of advanced features, which enhances visibility and accessibility of the wealth of glycoproteomic data being generated. The GlycoDomainViewer enables visual exploration of glycoproteomic data, incorporating information from recent N- and O-glycoproteome studies on human and animal cell lines and some organs and body fluids. The initial data comprises sites of glycosylation for N-linked, O-GalNAc, O-Fucose, O-Xyl, O-Mannose (in both human and yeast) and cytosolic O-GlcNAc type. The data made available via this tool will be regularly updated to improve the coverage of known glycosylation sites and datasets, reflecting the advances currently being made in characterization of glycoproteomes. The tool is available at https://glycodomain.glycomics.ku.dk.</description><issn>0959-6658</issn><issn>1460-2423</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNqFkD1PwzAQhi0EoqUwsiKPLKH-imOzoQIFqRILZY0c94yCkjjYidr-e1JaYGQ6ne65904PQpeU3FCi-fS92lpfTO16Q4k4QmMqJEmYYPwYjYlOdSJlqkboLMYPQqikKj1FI6aZzJQSY7Sc7_bvfW3K5q2ENYRbbHBR-rJxPtSmK23EnfcVHlpsfdPBputNhWHTVj4Mc99g7_D3G23wHfga4jk6caaKcHGoE7R8fHidPSWLl_nz7G6RWMFplwiXOedApZLxDHiaMr5iRkmnKTM0I4oYaxxhjttCE55SA6LIwLiCSsaI4BN0vc8dLn_2ELu8LqOFqjIN-D7mVGdaSyEVG9Bkj9rgYwzg8jaUtQnbnJJ8ZzLfm8z3Jgf-6hDdFzWsfukfdX-3fd_-k_UFe1SAyg</recordid><startdate>20180301</startdate><enddate>20180301</enddate><creator>Joshi, Hiren J</creator><creator>Jørgensen, Anja</creator><creator>Schjoldager, Katrine T</creator><creator>Halim, Adnan</creator><creator>Dworkin, Leo A</creator><creator>Steentoft, Catharina</creator><creator>Wandall, Hans H</creator><creator>Clausen, Henrik</creator><creator>Vakhrushev, Sergey Y</creator><general>Oxford University Press</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20180301</creationdate><title>GlycoDomainViewer: a bioinformatics tool for contextual exploration of glycoproteomes</title><author>Joshi, Hiren J ; Jørgensen, Anja ; Schjoldager, Katrine T ; Halim, Adnan ; Dworkin, Leo A ; Steentoft, Catharina ; Wandall, Hans H ; Clausen, Henrik ; Vakhrushev, Sergey Y</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c431t-4f7fffe856237e35523d2a86f912a17080acaf02f3cb90351ae4b7eafb1622043</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Joshi, Hiren J</creatorcontrib><creatorcontrib>Jørgensen, Anja</creatorcontrib><creatorcontrib>Schjoldager, Katrine T</creatorcontrib><creatorcontrib>Halim, Adnan</creatorcontrib><creatorcontrib>Dworkin, Leo A</creatorcontrib><creatorcontrib>Steentoft, Catharina</creatorcontrib><creatorcontrib>Wandall, Hans H</creatorcontrib><creatorcontrib>Clausen, Henrik</creatorcontrib><creatorcontrib>Vakhrushev, Sergey Y</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Glycobiology (Oxford)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Joshi, Hiren J</au><au>Jørgensen, Anja</au><au>Schjoldager, Katrine T</au><au>Halim, Adnan</au><au>Dworkin, Leo A</au><au>Steentoft, Catharina</au><au>Wandall, Hans H</au><au>Clausen, Henrik</au><au>Vakhrushev, Sergey Y</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>GlycoDomainViewer: a bioinformatics tool for contextual exploration of glycoproteomes</atitle><jtitle>Glycobiology (Oxford)</jtitle><addtitle>Glycobiology</addtitle><date>2018-03-01</date><risdate>2018</risdate><volume>28</volume><issue>3</issue><spage>131</spage><epage>136</epage><pages>131-136</pages><issn>0959-6658</issn><eissn>1460-2423</eissn><abstract>Abstract
The GlycoDomainViewer is a bioinformatic tool to aid in the mining of glycoproteomic datasets from different sources and facilitate incorporation of glycosylation into studies of protein structure and function. We present a version 2.0 of GlycoDomainViewer incorporating a number of advanced features, which enhances visibility and accessibility of the wealth of glycoproteomic data being generated. The GlycoDomainViewer enables visual exploration of glycoproteomic data, incorporating information from recent N- and O-glycoproteome studies on human and animal cell lines and some organs and body fluids. The initial data comprises sites of glycosylation for N-linked, O-GalNAc, O-Fucose, O-Xyl, O-Mannose (in both human and yeast) and cytosolic O-GlcNAc type. The data made available via this tool will be regularly updated to improve the coverage of known glycosylation sites and datasets, reflecting the advances currently being made in characterization of glycoproteomes. The tool is available at https://glycodomain.glycomics.ku.dk.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>29267884</pmid><doi>10.1093/glycob/cwx104</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| source | Oxford University Press Journals All Titles (1996-Current); Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| title | GlycoDomainViewer: a bioinformatics tool for contextual exploration of glycoproteomes |
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