Marichromatium bheemlicum sp. nov., a non-diazotrophic, photosynthetic gammaproteobacterium from a marine aquaculture pond

1 Bacterial Discovery Laboratory, Centre for Environment, Institute of Science and Technology, JNT University, Kukatpally, Hyderabad 500 085, India 2 Department of Plant Sciences, School of Life Sciences, University of Hyderabad, PO Central University, Hyderabad 500 046, India 3 Leibniz-Institut für...

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Veröffentlicht in:International journal of systematic and evolutionary microbiology 2007-06, Vol.57 (6), p.1261-1265
Hauptverfasser: Kumar, P. Anil, Jyothsna, T. S. Sasi, Srinivas, T. N. R, Sasikala, Ch, Ramana, Ch. V, Imhoff, J. F
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container_start_page 1261
container_title International journal of systematic and evolutionary microbiology
container_volume 57
creator Kumar, P. Anil
Jyothsna, T. S. Sasi
Srinivas, T. N. R
Sasikala, Ch
Ramana, Ch. V
Imhoff, J. F
description 1 Bacterial Discovery Laboratory, Centre for Environment, Institute of Science and Technology, JNT University, Kukatpally, Hyderabad 500 085, India 2 Department of Plant Sciences, School of Life Sciences, University of Hyderabad, PO Central University, Hyderabad 500 046, India 3 Leibniz-Institut für Meereswissenschaften, IFM-GEOMAR, Marine Mikrobiologie, Düsternbrooker Weg 20, 24105 Kiel, Germany Correspondence Ch. Sasikala r449{at}sify.com A rod-shaped, phototrophic, purple sulfur bacterium, strain JA124 T , was isolated in pure culture from a marine aquaculture pond, located near Bhimunipatnam, in a medium that contained 3 % NaCl (w/v). Strain JA124 T is a Gram-negative, motile rod with a single polar flagellum. Strain JA124 T has a requirement for NaCl, with optimum growth at 1.5–8.5 %, and tolerates up to 11 % NaCl. Intracellular photosynthetic membranes are of the vesicular type. Bacteriochlorophyll a and probably carotenoids of the spirilloxanthin series are present as photosynthetic pigments. Strain JA124 T was able to utilize sulfide, sulfate, thiosulfate, sulfite, thioglycollate and cysteine as sulfur sources. Strain JA124 T was able to grow photolithoautotrophically, photolithoheterotrophically and photo-organoheterotrophically. Chemotrophic and fermentative growth could not be demonstrated. Strain JA124 T lacks diazotrophic growth and acetylene reduction activity. Pyridoxal phosphate is required for growth. During growth on reduced sulfur sources as electron donors, sulfur is deposited intermediately as a number of small granules within the cell. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that strain JA124 T clusters with species of the genus Marichromatium belonging to the class Gammaproteobacteria . The highest sequence similarities of strain JA124 T were found with the type strains of Marichromatium indicum (98 %), Marichromatium purpuratum (95 %) and Marichromatium gracile (93 %). However, DNA–DNA hybridization with Marichromatium indicum DSM 15907 T revealed relatedness of only 65 % with strain JA124 T . The DNA base composition of strain JA124 T was 67 mol% G+C (by HPLC). Based on 16S rRNA gene sequence analysis, morphological and physiological characteristics and DNA–DNA hybridization studies, strain JA124 T (=ATCC BAA-1316 T =JCM 13911 T ) is sufficiently different from other Marichromatium species to merit its description as the type strain of a novel species, Marichromatium bheemlicum sp. nov. The GenBank/EMBL
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Anil ; Jyothsna, T. S. Sasi ; Srinivas, T. N. R ; Sasikala, Ch ; Ramana, Ch. V ; Imhoff, J. F</creator><creatorcontrib>Kumar, P. Anil ; Jyothsna, T. S. Sasi ; Srinivas, T. N. R ; Sasikala, Ch ; Ramana, Ch. V ; Imhoff, J. F</creatorcontrib><description>1 Bacterial Discovery Laboratory, Centre for Environment, Institute of Science and Technology, JNT University, Kukatpally, Hyderabad 500 085, India 2 Department of Plant Sciences, School of Life Sciences, University of Hyderabad, PO Central University, Hyderabad 500 046, India 3 Leibniz-Institut für Meereswissenschaften, IFM-GEOMAR, Marine Mikrobiologie, Düsternbrooker Weg 20, 24105 Kiel, Germany Correspondence Ch. Sasikala r449{at}sify.com A rod-shaped, phototrophic, purple sulfur bacterium, strain JA124 T , was isolated in pure culture from a marine aquaculture pond, located near Bhimunipatnam, in a medium that contained 3 % NaCl (w/v). Strain JA124 T is a Gram-negative, motile rod with a single polar flagellum. Strain JA124 T has a requirement for NaCl, with optimum growth at 1.5–8.5 %, and tolerates up to 11 % NaCl. Intracellular photosynthetic membranes are of the vesicular type. Bacteriochlorophyll a and probably carotenoids of the spirilloxanthin series are present as photosynthetic pigments. Strain JA124 T was able to utilize sulfide, sulfate, thiosulfate, sulfite, thioglycollate and cysteine as sulfur sources. Strain JA124 T was able to grow photolithoautotrophically, photolithoheterotrophically and photo-organoheterotrophically. Chemotrophic and fermentative growth could not be demonstrated. Strain JA124 T lacks diazotrophic growth and acetylene reduction activity. Pyridoxal phosphate is required for growth. During growth on reduced sulfur sources as electron donors, sulfur is deposited intermediately as a number of small granules within the cell. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that strain JA124 T clusters with species of the genus Marichromatium belonging to the class Gammaproteobacteria . The highest sequence similarities of strain JA124 T were found with the type strains of Marichromatium indicum (98 %), Marichromatium purpuratum (95 %) and Marichromatium gracile (93 %). However, DNA–DNA hybridization with Marichromatium indicum DSM 15907 T revealed relatedness of only 65 % with strain JA124 T . The DNA base composition of strain JA124 T was 67 mol% G+C (by HPLC). Based on 16S rRNA gene sequence analysis, morphological and physiological characteristics and DNA–DNA hybridization studies, strain JA124 T (=ATCC BAA-1316 T =JCM 13911 T ) is sufficiently different from other Marichromatium species to merit its description as the type strain of a novel species, Marichromatium bheemlicum sp. nov. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain JA124 T is AM180952 . Phase-contrast and electron micrograph images of cells of strain JA124 T and absorption spectra of a whole-cell extract and acetone-extracted pigments are available as supplementary material with the online version of this paper.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64753-0</identifier><identifier>PMID: 17551040</identifier><language>eng</language><publisher>England: Soc General Microbiol</publisher><subject>Acetylene - metabolism ; Aquaculture ; Bacterial Proteins - analysis ; Bacterial Typing Techniques ; Bacteriochlorophylls - analysis ; Base Composition ; Chromatiaceae - classification ; Chromatiaceae - cytology ; Chromatiaceae - isolation &amp; purification ; Chromatiaceae - physiology ; Cytoplasmic Vesicles - physiology ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Electrophoresis, Polyacrylamide Gel ; Flagella - physiology ; Genes, rRNA ; India ; Locomotion ; Marichromatium bheemlicum ; Marine ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Photosynthesis ; Phylogeny ; Proteobacteria ; Proteome - analysis ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Seawater - microbiology ; Sequence Analysis, DNA ; Sequence Homology, Nucleic Acid ; Sulfur - metabolism ; Xanthophylls - analysis</subject><ispartof>International journal of systematic and evolutionary microbiology, 2007-06, Vol.57 (6), p.1261-1265</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3090-c6ca17ef4f67efa88b98d722fd9506d2bb5816505ecf16aa39a2a83682deb8083</citedby><cites>FETCH-LOGICAL-c3090-c6ca17ef4f67efa88b98d722fd9506d2bb5816505ecf16aa39a2a83682deb8083</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,3747,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17551040$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kumar, P. Anil</creatorcontrib><creatorcontrib>Jyothsna, T. S. Sasi</creatorcontrib><creatorcontrib>Srinivas, T. N. R</creatorcontrib><creatorcontrib>Sasikala, Ch</creatorcontrib><creatorcontrib>Ramana, Ch. V</creatorcontrib><creatorcontrib>Imhoff, J. F</creatorcontrib><title>Marichromatium bheemlicum sp. nov., a non-diazotrophic, photosynthetic gammaproteobacterium from a marine aquaculture pond</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Bacterial Discovery Laboratory, Centre for Environment, Institute of Science and Technology, JNT University, Kukatpally, Hyderabad 500 085, India 2 Department of Plant Sciences, School of Life Sciences, University of Hyderabad, PO Central University, Hyderabad 500 046, India 3 Leibniz-Institut für Meereswissenschaften, IFM-GEOMAR, Marine Mikrobiologie, Düsternbrooker Weg 20, 24105 Kiel, Germany Correspondence Ch. Sasikala r449{at}sify.com A rod-shaped, phototrophic, purple sulfur bacterium, strain JA124 T , was isolated in pure culture from a marine aquaculture pond, located near Bhimunipatnam, in a medium that contained 3 % NaCl (w/v). Strain JA124 T is a Gram-negative, motile rod with a single polar flagellum. Strain JA124 T has a requirement for NaCl, with optimum growth at 1.5–8.5 %, and tolerates up to 11 % NaCl. Intracellular photosynthetic membranes are of the vesicular type. Bacteriochlorophyll a and probably carotenoids of the spirilloxanthin series are present as photosynthetic pigments. Strain JA124 T was able to utilize sulfide, sulfate, thiosulfate, sulfite, thioglycollate and cysteine as sulfur sources. Strain JA124 T was able to grow photolithoautotrophically, photolithoheterotrophically and photo-organoheterotrophically. Chemotrophic and fermentative growth could not be demonstrated. Strain JA124 T lacks diazotrophic growth and acetylene reduction activity. Pyridoxal phosphate is required for growth. During growth on reduced sulfur sources as electron donors, sulfur is deposited intermediately as a number of small granules within the cell. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that strain JA124 T clusters with species of the genus Marichromatium belonging to the class Gammaproteobacteria . The highest sequence similarities of strain JA124 T were found with the type strains of Marichromatium indicum (98 %), Marichromatium purpuratum (95 %) and Marichromatium gracile (93 %). However, DNA–DNA hybridization with Marichromatium indicum DSM 15907 T revealed relatedness of only 65 % with strain JA124 T . The DNA base composition of strain JA124 T was 67 mol% G+C (by HPLC). Based on 16S rRNA gene sequence analysis, morphological and physiological characteristics and DNA–DNA hybridization studies, strain JA124 T (=ATCC BAA-1316 T =JCM 13911 T ) is sufficiently different from other Marichromatium species to merit its description as the type strain of a novel species, Marichromatium bheemlicum sp. nov. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain JA124 T is AM180952 . Phase-contrast and electron micrograph images of cells of strain JA124 T and absorption spectra of a whole-cell extract and acetone-extracted pigments are available as supplementary material with the online version of this paper.</description><subject>Acetylene - metabolism</subject><subject>Aquaculture</subject><subject>Bacterial Proteins - analysis</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriochlorophylls - analysis</subject><subject>Base Composition</subject><subject>Chromatiaceae - classification</subject><subject>Chromatiaceae - cytology</subject><subject>Chromatiaceae - isolation &amp; purification</subject><subject>Chromatiaceae - physiology</subject><subject>Cytoplasmic Vesicles - physiology</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Electrophoresis, Polyacrylamide Gel</subject><subject>Flagella - physiology</subject><subject>Genes, rRNA</subject><subject>India</subject><subject>Locomotion</subject><subject>Marichromatium bheemlicum</subject><subject>Marine</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Hybridization</subject><subject>Photosynthesis</subject><subject>Phylogeny</subject><subject>Proteobacteria</subject><subject>Proteome - analysis</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Sulfur - metabolism</subject><subject>Xanthophylls - analysis</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkbFP3TAQh60KVCjtyFplQh1IOCex44wVorQSqEuZLce5vBjFcbAdEPz1-PGe6MriO50-f_bpR8gphYJC216Y-1BAweuGVTl8Ise05jxnUNUH733Jj8iXEO4B0gDgMzmiDWMUajgmL7fKGz16Z1U0q826EdFORqc2LEU2u8fiPFOpznlv1IuL3i2j0efZMrrowvMcR4xGZxtlrVq8i-g6pSP6rWxI2nTZpidmzNTDqvQ6xdVjtri5_0oOBzUF_LavJ-Tu19W_y9_5zd_rP5c_b3JdQQu55lrRBod64OlUQnSt6JuyHPqWAe_LrmOCcgYM9UC5UlWrSiUqLsoeOwGiOiFnO2_63sOKIUprgsZpUjO6NUjaNgmj_ANgzUVFIYH5DtTeheBxkIs3actnSUFuU5EpFQnyLRW55b_vxWtnsf9P72NIwI8dMJrN-GQ8yg3O1iR9Z9xWxhrJJS05rV4BtamZNg</recordid><startdate>200706</startdate><enddate>200706</enddate><creator>Kumar, P. 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Anil</au><au>Jyothsna, T. S. Sasi</au><au>Srinivas, T. N. R</au><au>Sasikala, Ch</au><au>Ramana, Ch. V</au><au>Imhoff, J. F</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Marichromatium bheemlicum sp. nov., a non-diazotrophic, photosynthetic gammaproteobacterium from a marine aquaculture pond</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2007-06</date><risdate>2007</risdate><volume>57</volume><issue>6</issue><spage>1261</spage><epage>1265</epage><pages>1261-1265</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Bacterial Discovery Laboratory, Centre for Environment, Institute of Science and Technology, JNT University, Kukatpally, Hyderabad 500 085, India 2 Department of Plant Sciences, School of Life Sciences, University of Hyderabad, PO Central University, Hyderabad 500 046, India 3 Leibniz-Institut für Meereswissenschaften, IFM-GEOMAR, Marine Mikrobiologie, Düsternbrooker Weg 20, 24105 Kiel, Germany Correspondence Ch. Sasikala r449{at}sify.com A rod-shaped, phototrophic, purple sulfur bacterium, strain JA124 T , was isolated in pure culture from a marine aquaculture pond, located near Bhimunipatnam, in a medium that contained 3 % NaCl (w/v). Strain JA124 T is a Gram-negative, motile rod with a single polar flagellum. Strain JA124 T has a requirement for NaCl, with optimum growth at 1.5–8.5 %, and tolerates up to 11 % NaCl. Intracellular photosynthetic membranes are of the vesicular type. Bacteriochlorophyll a and probably carotenoids of the spirilloxanthin series are present as photosynthetic pigments. Strain JA124 T was able to utilize sulfide, sulfate, thiosulfate, sulfite, thioglycollate and cysteine as sulfur sources. Strain JA124 T was able to grow photolithoautotrophically, photolithoheterotrophically and photo-organoheterotrophically. Chemotrophic and fermentative growth could not be demonstrated. Strain JA124 T lacks diazotrophic growth and acetylene reduction activity. Pyridoxal phosphate is required for growth. During growth on reduced sulfur sources as electron donors, sulfur is deposited intermediately as a number of small granules within the cell. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that strain JA124 T clusters with species of the genus Marichromatium belonging to the class Gammaproteobacteria . The highest sequence similarities of strain JA124 T were found with the type strains of Marichromatium indicum (98 %), Marichromatium purpuratum (95 %) and Marichromatium gracile (93 %). However, DNA–DNA hybridization with Marichromatium indicum DSM 15907 T revealed relatedness of only 65 % with strain JA124 T . The DNA base composition of strain JA124 T was 67 mol% G+C (by HPLC). Based on 16S rRNA gene sequence analysis, morphological and physiological characteristics and DNA–DNA hybridization studies, strain JA124 T (=ATCC BAA-1316 T =JCM 13911 T ) is sufficiently different from other Marichromatium species to merit its description as the type strain of a novel species, Marichromatium bheemlicum sp. nov. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain JA124 T is AM180952 . Phase-contrast and electron micrograph images of cells of strain JA124 T and absorption spectra of a whole-cell extract and acetone-extracted pigments are available as supplementary material with the online version of this paper.</abstract><cop>England</cop><pub>Soc General Microbiol</pub><pmid>17551040</pmid><doi>10.1099/ijs.0.64753-0</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record>
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subjects Acetylene - metabolism
Aquaculture
Bacterial Proteins - analysis
Bacterial Typing Techniques
Bacteriochlorophylls - analysis
Base Composition
Chromatiaceae - classification
Chromatiaceae - cytology
Chromatiaceae - isolation & purification
Chromatiaceae - physiology
Cytoplasmic Vesicles - physiology
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
Electrophoresis, Polyacrylamide Gel
Flagella - physiology
Genes, rRNA
India
Locomotion
Marichromatium bheemlicum
Marine
Molecular Sequence Data
Nucleic Acid Hybridization
Photosynthesis
Phylogeny
Proteobacteria
Proteome - analysis
RNA, Bacterial - genetics
RNA, Ribosomal, 16S - genetics
Seawater - microbiology
Sequence Analysis, DNA
Sequence Homology, Nucleic Acid
Sulfur - metabolism
Xanthophylls - analysis
title Marichromatium bheemlicum sp. nov., a non-diazotrophic, photosynthetic gammaproteobacterium from a marine aquaculture pond
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