High‐resolution hyperpolarized metabolic imaging of the rat heart using k–t PCA and k–t SPARSE
The purpose of this work was to increase the resolution of hyperpolarized metabolic imaging of the rat heart with accelerated imaging using k–t principal component analysis (k–t PCA) and k–t compressed sensing (k–t SPARSE). Fully sampled in vivo datasets were acquired from six healthy rats after the...
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description | The purpose of this work was to increase the resolution of hyperpolarized metabolic imaging of the rat heart with accelerated imaging using k–t principal component analysis (k–t PCA) and k–t compressed sensing (k–t SPARSE). Fully sampled in vivo datasets were acquired from six healthy rats after the injection of hyperpolarized [1‐13C]pyruvate. Data were retrospectively undersampled and reconstructed with either k–t PCA or k–t SPARSE. Errors of signal–time curves of pyruvate, lactate and bicarbonate were determined to compare the two reconstruction algorithms for different undersampling factors R. Prospectively undersampled imaging at 1 × 1 × 3.5‐mm3 resolution was performed with both methods in the same animals and compared with the fully sampled acquisition. k–t SPARSE was found to perform better at R < 3, but was outperformed by k–t PCA at R ≥ 4. Prospectively undersampled data were successfully reconstructed with both k–t PCA and k–t SPARSE in all subjects. No significant difference between the undersampled and fully sampled data was found in terms of signal‐to‐noise ratio (SNR) performance and metabolic quantification. Accelerated imaging with both k–t PCA and k–t SPARSE allows an increase in resolution, thereby reducing the intravoxel dephasing of hyperpolarized metabolic imaging of the rat heart.
k–t principal component analysis (k–t PCA) and k–t compressed sensing (k–t SPARSE) are shown to allow an increase in the resolution of hyperpolarized metabolic imaging of the rat heart at 9.4 T by more than two‐fold relative to previous methods, thereby reducing intravoxel phase dispersion and facilitating segment‐wise analysis of metabolic ratios of the in vivo rat heart |
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k–t principal component analysis (k–t PCA) and k–t compressed sensing (k–t SPARSE) are shown to allow an increase in the resolution of hyperpolarized metabolic imaging of the rat heart at 9.4 T by more than two‐fold relative to previous methods, thereby reducing intravoxel phase dispersion and facilitating segment‐wise analysis of metabolic ratios of the in vivo rat heart</description><identifier>ISSN: 0952-3480</identifier><identifier>EISSN: 1099-1492</identifier><identifier>DOI: 10.1002/nbm.3876</identifier><identifier>PMID: 29244228</identifier><language>eng</language><publisher>England: Wiley Subscription Services, Inc</publisher><subject>accelerated imaging ; Animals ; Area Under Curve ; Bicarbonates ; Bicarbonates - metabolism ; Biological products ; Carbon Isotopes - metabolism ; Carbonates ; cardiac metabolism ; Computer Simulation ; Heart ; hyperpolarized 13C ; Image Processing, Computer-Assisted ; Image resolution ; k–t PCA ; k–t SPARSE ; Lactic acid ; Lactic Acid - metabolism ; Magnetic Resonance Imaging ; metabolic imaging ; Metabolism ; Myocardium - metabolism ; Principal Component Analysis ; Principal components analysis ; Pyruvic acid ; Pyruvic Acid - metabolism ; Rats ; Rats, Sprague-Dawley ; Signal-To-Noise Ratio</subject><ispartof>NMR in biomedicine, 2018-02, Vol.31 (2), p.n/a</ispartof><rights>Copyright © 2017 John Wiley & Sons, Ltd.</rights><rights>Copyright © 2018 John Wiley & Sons, Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3496-c85af3334170321ddae0e5e0ae2e85d91ae0ba73e4ed97f4377665db6c12cdcd3</citedby><cites>FETCH-LOGICAL-c3496-c85af3334170321ddae0e5e0ae2e85d91ae0ba73e4ed97f4377665db6c12cdcd3</cites><orcidid>0000-0003-4309-445X ; 0000-0003-3916-1285 ; 0000-0001-6783-3590 ; 0000-0003-3725-8884</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fnbm.3876$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fnbm.3876$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29244228$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wespi, Patrick</creatorcontrib><creatorcontrib>Steinhauser, Jonas</creatorcontrib><creatorcontrib>Kwiatkowski, Grzegorz</creatorcontrib><creatorcontrib>Kozerke, Sebastian</creatorcontrib><title>High‐resolution hyperpolarized metabolic imaging of the rat heart using k–t PCA and k–t SPARSE</title><title>NMR in biomedicine</title><addtitle>NMR Biomed</addtitle><description>The purpose of this work was to increase the resolution of hyperpolarized metabolic imaging of the rat heart with accelerated imaging using k–t principal component analysis (k–t PCA) and k–t compressed sensing (k–t SPARSE). Fully sampled in vivo datasets were acquired from six healthy rats after the injection of hyperpolarized [1‐13C]pyruvate. Data were retrospectively undersampled and reconstructed with either k–t PCA or k–t SPARSE. Errors of signal–time curves of pyruvate, lactate and bicarbonate were determined to compare the two reconstruction algorithms for different undersampling factors R. Prospectively undersampled imaging at 1 × 1 × 3.5‐mm3 resolution was performed with both methods in the same animals and compared with the fully sampled acquisition. k–t SPARSE was found to perform better at R < 3, but was outperformed by k–t PCA at R ≥ 4. Prospectively undersampled data were successfully reconstructed with both k–t PCA and k–t SPARSE in all subjects. No significant difference between the undersampled and fully sampled data was found in terms of signal‐to‐noise ratio (SNR) performance and metabolic quantification. Accelerated imaging with both k–t PCA and k–t SPARSE allows an increase in resolution, thereby reducing the intravoxel dephasing of hyperpolarized metabolic imaging of the rat heart.
k–t principal component analysis (k–t PCA) and k–t compressed sensing (k–t SPARSE) are shown to allow an increase in the resolution of hyperpolarized metabolic imaging of the rat heart at 9.4 T by more than two‐fold relative to previous methods, thereby reducing intravoxel phase dispersion and facilitating segment‐wise analysis of metabolic ratios of the in vivo rat heart</description><subject>accelerated imaging</subject><subject>Animals</subject><subject>Area Under Curve</subject><subject>Bicarbonates</subject><subject>Bicarbonates - metabolism</subject><subject>Biological products</subject><subject>Carbon Isotopes - metabolism</subject><subject>Carbonates</subject><subject>cardiac metabolism</subject><subject>Computer Simulation</subject><subject>Heart</subject><subject>hyperpolarized 13C</subject><subject>Image Processing, Computer-Assisted</subject><subject>Image resolution</subject><subject>k–t PCA</subject><subject>k–t SPARSE</subject><subject>Lactic acid</subject><subject>Lactic Acid - metabolism</subject><subject>Magnetic Resonance Imaging</subject><subject>metabolic imaging</subject><subject>Metabolism</subject><subject>Myocardium - metabolism</subject><subject>Principal Component Analysis</subject><subject>Principal components analysis</subject><subject>Pyruvic acid</subject><subject>Pyruvic Acid - metabolism</subject><subject>Rats</subject><subject>Rats, Sprague-Dawley</subject><subject>Signal-To-Noise Ratio</subject><issn>0952-3480</issn><issn>1099-1492</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kM1q20AQgJeSUjtJoU8QFnLpRe7-Sbt7dIwbF5LUJOlZrLQjW4mkdXYlinvyIwTyhn6SyombQCGnYYaPj-FD6AslI0oI-9Zk9YgrmXxAQ0q0jqjQ7AANiY5ZxIUiA3QYwh0hRAnOPqEB00wIxtQQ2Vm5WG43jx6Cq7q2dA1erlfgV64yvvwDFtfQmsxVZY7L2izKZoFdgdslYG9avATjW9yF3fl-u3lq8Xwyxqax--1mPr6-mR6jj4WpAnzezyP06_v0djKLLn6e_5iML6KcC51EuYpNwTkXVBLOqLUGCMRADDBQsdW03zMjOQiwWhaCS5kksc2SnLLc5pYfoa8v3pV3Dx2ENq3LkENVmQZcF1KqpZSKKMV79PQ_9M51vum_6ymlYqJizt6EuXcheCjSle8r-HVKSborn_bl0135Hj3ZC7usBvsK_kvdA9EL8LusYP2uKL06u3wW_gV9Q461</recordid><startdate>201802</startdate><enddate>201802</enddate><creator>Wespi, Patrick</creator><creator>Steinhauser, Jonas</creator><creator>Kwiatkowski, Grzegorz</creator><creator>Kozerke, Sebastian</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-4309-445X</orcidid><orcidid>https://orcid.org/0000-0003-3916-1285</orcidid><orcidid>https://orcid.org/0000-0001-6783-3590</orcidid><orcidid>https://orcid.org/0000-0003-3725-8884</orcidid></search><sort><creationdate>201802</creationdate><title>High‐resolution hyperpolarized metabolic imaging of the rat heart using k–t PCA and k–t SPARSE</title><author>Wespi, Patrick ; Steinhauser, Jonas ; Kwiatkowski, Grzegorz ; Kozerke, Sebastian</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3496-c85af3334170321ddae0e5e0ae2e85d91ae0ba73e4ed97f4377665db6c12cdcd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>accelerated imaging</topic><topic>Animals</topic><topic>Area Under Curve</topic><topic>Bicarbonates</topic><topic>Bicarbonates - metabolism</topic><topic>Biological products</topic><topic>Carbon Isotopes - metabolism</topic><topic>Carbonates</topic><topic>cardiac metabolism</topic><topic>Computer Simulation</topic><topic>Heart</topic><topic>hyperpolarized 13C</topic><topic>Image Processing, Computer-Assisted</topic><topic>Image resolution</topic><topic>k–t PCA</topic><topic>k–t SPARSE</topic><topic>Lactic acid</topic><topic>Lactic Acid - metabolism</topic><topic>Magnetic Resonance Imaging</topic><topic>metabolic imaging</topic><topic>Metabolism</topic><topic>Myocardium - metabolism</topic><topic>Principal Component Analysis</topic><topic>Principal components analysis</topic><topic>Pyruvic acid</topic><topic>Pyruvic Acid - metabolism</topic><topic>Rats</topic><topic>Rats, Sprague-Dawley</topic><topic>Signal-To-Noise Ratio</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wespi, Patrick</creatorcontrib><creatorcontrib>Steinhauser, Jonas</creatorcontrib><creatorcontrib>Kwiatkowski, Grzegorz</creatorcontrib><creatorcontrib>Kozerke, Sebastian</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>NMR in biomedicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wespi, Patrick</au><au>Steinhauser, Jonas</au><au>Kwiatkowski, Grzegorz</au><au>Kozerke, Sebastian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>High‐resolution hyperpolarized metabolic imaging of the rat heart using k–t PCA and k–t SPARSE</atitle><jtitle>NMR in biomedicine</jtitle><addtitle>NMR Biomed</addtitle><date>2018-02</date><risdate>2018</risdate><volume>31</volume><issue>2</issue><epage>n/a</epage><issn>0952-3480</issn><eissn>1099-1492</eissn><abstract>The purpose of this work was to increase the resolution of hyperpolarized metabolic imaging of the rat heart with accelerated imaging using k–t principal component analysis (k–t PCA) and k–t compressed sensing (k–t SPARSE). Fully sampled in vivo datasets were acquired from six healthy rats after the injection of hyperpolarized [1‐13C]pyruvate. Data were retrospectively undersampled and reconstructed with either k–t PCA or k–t SPARSE. Errors of signal–time curves of pyruvate, lactate and bicarbonate were determined to compare the two reconstruction algorithms for different undersampling factors R. Prospectively undersampled imaging at 1 × 1 × 3.5‐mm3 resolution was performed with both methods in the same animals and compared with the fully sampled acquisition. k–t SPARSE was found to perform better at R < 3, but was outperformed by k–t PCA at R ≥ 4. Prospectively undersampled data were successfully reconstructed with both k–t PCA and k–t SPARSE in all subjects. No significant difference between the undersampled and fully sampled data was found in terms of signal‐to‐noise ratio (SNR) performance and metabolic quantification. Accelerated imaging with both k–t PCA and k–t SPARSE allows an increase in resolution, thereby reducing the intravoxel dephasing of hyperpolarized metabolic imaging of the rat heart.
k–t principal component analysis (k–t PCA) and k–t compressed sensing (k–t SPARSE) are shown to allow an increase in the resolution of hyperpolarized metabolic imaging of the rat heart at 9.4 T by more than two‐fold relative to previous methods, thereby reducing intravoxel phase dispersion and facilitating segment‐wise analysis of metabolic ratios of the in vivo rat heart</abstract><cop>England</cop><pub>Wiley Subscription Services, Inc</pub><pmid>29244228</pmid><doi>10.1002/nbm.3876</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0003-4309-445X</orcidid><orcidid>https://orcid.org/0000-0003-3916-1285</orcidid><orcidid>https://orcid.org/0000-0001-6783-3590</orcidid><orcidid>https://orcid.org/0000-0003-3725-8884</orcidid></addata></record> |
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subjects | accelerated imaging Animals Area Under Curve Bicarbonates Bicarbonates - metabolism Biological products Carbon Isotopes - metabolism Carbonates cardiac metabolism Computer Simulation Heart hyperpolarized 13C Image Processing, Computer-Assisted Image resolution k–t PCA k–t SPARSE Lactic acid Lactic Acid - metabolism Magnetic Resonance Imaging metabolic imaging Metabolism Myocardium - metabolism Principal Component Analysis Principal components analysis Pyruvic acid Pyruvic Acid - metabolism Rats Rats, Sprague-Dawley Signal-To-Noise Ratio |
title | High‐resolution hyperpolarized metabolic imaging of the rat heart using k–t PCA and k–t SPARSE |
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