Bacillus amyloliquefaciens ssp. plantarum F11 isolated from Algerian salty lake as a source of biosurfactants and bioactive lipopeptides
In this study, we identified a new Bacillus strain isolated from an Algerian salty lake that produces metabolites that are active against Gram-positive and Gram-negative bacteria, as well as fungal pathogens. The draft genome sequence of the strain is presented herein. Genome sequence analysis ident...
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| Veröffentlicht in: | FEMS microbiology letters 2018-01, Vol.365 (1), p.1 |
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| creator | Daas, Mohamed Seghir Acedo, Jeella Z Rosana, Albert Remus R Orata, Fabini D Reiz, Béla Zheng, Jing Nateche, Farida Case, Rebecca J Kebbouche-Gana, Salima Vederas, John C |
| description | In this study, we identified a new Bacillus strain isolated from an Algerian salty lake that produces metabolites that are active against Gram-positive and Gram-negative bacteria, as well as fungal pathogens. The draft genome sequence of the strain is presented herein. Genome sequence analysis identified the strain to be B. amyloliquefaciens subspecies plantarum F11, and showed that the strain carries the gene clusters for the production of a number of bioactive and surface-active compounds. These include the lipopeptides surfactin and fengycin, antibacterial polyketides macrolactin and bacillaene, and a putative novel lanthipeptide, among others. Through an activity-guided purification method using hydrophobic interaction chromatographic techniques, we confirmed the ability of the strain to produce fengycin lipopeptides. The identities of the isolated fengycin homologs were ascertained through tandem mass spectrometry. |
| doi_str_mv | 10.1093/femsle/fnx248 |
| format | Article |
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The draft genome sequence of the strain is presented herein. Genome sequence analysis identified the strain to be B. amyloliquefaciens subspecies plantarum F11, and showed that the strain carries the gene clusters for the production of a number of bioactive and surface-active compounds. These include the lipopeptides surfactin and fengycin, antibacterial polyketides macrolactin and bacillaene, and a putative novel lanthipeptide, among others. Through an activity-guided purification method using hydrophobic interaction chromatographic techniques, we confirmed the ability of the strain to produce fengycin lipopeptides. The identities of the isolated fengycin homologs were ascertained through tandem mass spectrometry.</description><identifier>ISSN: 1574-6968</identifier><identifier>ISSN: 0378-1097</identifier><identifier>EISSN: 1574-6968</identifier><identifier>DOI: 10.1093/femsle/fnx248</identifier><identifier>PMID: 29186395</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Antibacterial agents ; Antimicrobial agents ; Bacillus (Bacteria) ; Bacteria ; Biological activity ; Biosurfactants ; Chemical properties ; Chromatography ; Gene clusters ; Genetic aspects ; Genomes ; Gram-negative bacteria ; Homology ; Hydrophobicity ; Identification and classification ; Lakes ; Lipopeptides ; Mass spectrometry ; Mass spectroscopy ; Metabolites ; Microbiological research ; Microbiology ; Nucleotide sequence ; Polyketides ; Purification ; Sequence analysis ; Surfactin ; Water analysis</subject><ispartof>FEMS microbiology letters, 2018-01, Vol.365 (1), p.1</ispartof><rights>FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</rights><rights>COPYRIGHT 2018 Oxford University Press</rights><rights>FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c461t-4083a702b916b15195c2f458f9527f542f424ef0f133ff31c82c2981703b413f3</citedby><cites>FETCH-LOGICAL-c461t-4083a702b916b15195c2f458f9527f542f424ef0f133ff31c82c2981703b413f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29186395$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Daas, Mohamed Seghir</creatorcontrib><creatorcontrib>Acedo, Jeella Z</creatorcontrib><creatorcontrib>Rosana, Albert Remus R</creatorcontrib><creatorcontrib>Orata, Fabini D</creatorcontrib><creatorcontrib>Reiz, Béla</creatorcontrib><creatorcontrib>Zheng, Jing</creatorcontrib><creatorcontrib>Nateche, Farida</creatorcontrib><creatorcontrib>Case, Rebecca J</creatorcontrib><creatorcontrib>Kebbouche-Gana, Salima</creatorcontrib><creatorcontrib>Vederas, John C</creatorcontrib><title>Bacillus amyloliquefaciens ssp. plantarum F11 isolated from Algerian salty lake as a source of biosurfactants and bioactive lipopeptides</title><title>FEMS microbiology letters</title><addtitle>FEMS Microbiol Lett</addtitle><description>In this study, we identified a new Bacillus strain isolated from an Algerian salty lake that produces metabolites that are active against Gram-positive and Gram-negative bacteria, as well as fungal pathogens. The draft genome sequence of the strain is presented herein. Genome sequence analysis identified the strain to be B. amyloliquefaciens subspecies plantarum F11, and showed that the strain carries the gene clusters for the production of a number of bioactive and surface-active compounds. These include the lipopeptides surfactin and fengycin, antibacterial polyketides macrolactin and bacillaene, and a putative novel lanthipeptide, among others. Through an activity-guided purification method using hydrophobic interaction chromatographic techniques, we confirmed the ability of the strain to produce fengycin lipopeptides. The identities of the isolated fengycin homologs were ascertained through tandem mass spectrometry.</description><subject>Antibacterial agents</subject><subject>Antimicrobial agents</subject><subject>Bacillus (Bacteria)</subject><subject>Bacteria</subject><subject>Biological activity</subject><subject>Biosurfactants</subject><subject>Chemical properties</subject><subject>Chromatography</subject><subject>Gene clusters</subject><subject>Genetic aspects</subject><subject>Genomes</subject><subject>Gram-negative bacteria</subject><subject>Homology</subject><subject>Hydrophobicity</subject><subject>Identification and classification</subject><subject>Lakes</subject><subject>Lipopeptides</subject><subject>Mass spectrometry</subject><subject>Mass spectroscopy</subject><subject>Metabolites</subject><subject>Microbiological research</subject><subject>Microbiology</subject><subject>Nucleotide sequence</subject><subject>Polyketides</subject><subject>Purification</subject><subject>Sequence 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amyloliquefaciens ssp. plantarum F11 isolated from Algerian salty lake as a source of biosurfactants and bioactive lipopeptides</title><author>Daas, Mohamed Seghir ; Acedo, Jeella Z ; Rosana, Albert Remus R ; Orata, Fabini D ; Reiz, Béla ; Zheng, Jing ; Nateche, Farida ; Case, Rebecca J ; Kebbouche-Gana, Salima ; Vederas, John C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c461t-4083a702b916b15195c2f458f9527f542f424ef0f133ff31c82c2981703b413f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Antibacterial agents</topic><topic>Antimicrobial agents</topic><topic>Bacillus (Bacteria)</topic><topic>Bacteria</topic><topic>Biological activity</topic><topic>Biosurfactants</topic><topic>Chemical properties</topic><topic>Chromatography</topic><topic>Gene clusters</topic><topic>Genetic aspects</topic><topic>Genomes</topic><topic>Gram-negative bacteria</topic><topic>Homology</topic><topic>Hydrophobicity</topic><topic>Identification and classification</topic><topic>Lakes</topic><topic>Lipopeptides</topic><topic>Mass spectrometry</topic><topic>Mass spectroscopy</topic><topic>Metabolites</topic><topic>Microbiological research</topic><topic>Microbiology</topic><topic>Nucleotide sequence</topic><topic>Polyketides</topic><topic>Purification</topic><topic>Sequence analysis</topic><topic>Surfactin</topic><topic>Water analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Daas, Mohamed Seghir</creatorcontrib><creatorcontrib>Acedo, Jeella Z</creatorcontrib><creatorcontrib>Rosana, Albert Remus R</creatorcontrib><creatorcontrib>Orata, Fabini D</creatorcontrib><creatorcontrib>Reiz, Béla</creatorcontrib><creatorcontrib>Zheng, Jing</creatorcontrib><creatorcontrib>Nateche, Farida</creatorcontrib><creatorcontrib>Case, Rebecca J</creatorcontrib><creatorcontrib>Kebbouche-Gana, 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Z</au><au>Rosana, Albert Remus R</au><au>Orata, Fabini D</au><au>Reiz, Béla</au><au>Zheng, Jing</au><au>Nateche, Farida</au><au>Case, Rebecca J</au><au>Kebbouche-Gana, Salima</au><au>Vederas, John C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Bacillus amyloliquefaciens ssp. plantarum F11 isolated from Algerian salty lake as a source of biosurfactants and bioactive lipopeptides</atitle><jtitle>FEMS microbiology letters</jtitle><addtitle>FEMS Microbiol Lett</addtitle><date>2018-01-01</date><risdate>2018</risdate><volume>365</volume><issue>1</issue><spage>1</spage><pages>1-</pages><issn>1574-6968</issn><issn>0378-1097</issn><eissn>1574-6968</eissn><abstract>In this study, we identified a new Bacillus strain isolated from an Algerian salty lake that produces metabolites that are active against Gram-positive and Gram-negative bacteria, as well as fungal pathogens. The draft genome sequence of the strain is presented herein. Genome sequence analysis identified the strain to be B. amyloliquefaciens subspecies plantarum F11, and showed that the strain carries the gene clusters for the production of a number of bioactive and surface-active compounds. These include the lipopeptides surfactin and fengycin, antibacterial polyketides macrolactin and bacillaene, and a putative novel lanthipeptide, among others. Through an activity-guided purification method using hydrophobic interaction chromatographic techniques, we confirmed the ability of the strain to produce fengycin lipopeptides. The identities of the isolated fengycin homologs were ascertained through tandem mass spectrometry.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>29186395</pmid><doi>10.1093/femsle/fnx248</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 1574-6968 |
| ispartof | FEMS microbiology letters, 2018-01, Vol.365 (1), p.1 |
| issn | 1574-6968 0378-1097 1574-6968 |
| language | eng |
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| source | Oxford University Press Journals All Titles (1996-Current); Alma/SFX Local Collection |
| subjects | Antibacterial agents Antimicrobial agents Bacillus (Bacteria) Bacteria Biological activity Biosurfactants Chemical properties Chromatography Gene clusters Genetic aspects Genomes Gram-negative bacteria Homology Hydrophobicity Identification and classification Lakes Lipopeptides Mass spectrometry Mass spectroscopy Metabolites Microbiological research Microbiology Nucleotide sequence Polyketides Purification Sequence analysis Surfactin Water analysis |
| title | Bacillus amyloliquefaciens ssp. plantarum F11 isolated from Algerian salty lake as a source of biosurfactants and bioactive lipopeptides |
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