Evaluation of the Thermo Scientific™ SureTect™ Salmonella species Assay
The Thermo Scientific™ SureTect™ Salmonella species Assay is a new real-time PCR assay for the detection of Salmonellae in food and environmental samples. This validation study was conducted using the AOAC Research Institute (RI) Performance Tested MethodsSM program to validate the SureTect Salmonel...
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Veröffentlicht in: | Journal of AOAC International 2014-03, Vol.97 (2), p.539-560 |
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creator | Cloke, Jonathan Clark, Jr, Dorn Radcliff, Roy Leon-Velarde, Carlos Larson, Nathan Dave, Keron Evans, Katharine Crabtree, David Hughes, Annette Simpson, Helen Holopainen, Jani Wickstrand, Nina Kauppinen, Mikko |
description | The Thermo Scientific™ SureTect™ Salmonella species Assay is a new real-time PCR assay for the detection of Salmonellae in food and environmental samples. This validation study was conducted using the AOAC Research Institute (RI) Performance Tested MethodsSM program to validate the SureTect Salmonella species Assay in comparison to the reference method detailed in International Organization for Standardization 6579:2002 in a variety of food matrixes, namely, raw ground beef, raw chicken breast, raw ground pork, fresh bagged lettuce, pork frankfurters, nonfat dried milk powder, cooked peeled shrimp, pasteurized liquid whole egg, ready-to-eat meal containing beef, and stainless steel surface samples. With the exception of liquid whole egg and fresh bagged lettuce, which were tested in-house, all matrixes were tested by Marshfield Food Safety, Marshfield, WI, on behalf of Thermo Fisher Scientific. In addition, three matrixes (pork frankfurters, lettuce, and stainless steel surface samples) were analyzed independently as part of the AOAC-RI-controlled laboratory study by the University of Guelph, Canada. No significant difference by probability of detection or McNemars Chi-squared statistical analysis was found between the candidate or reference methods for any of the food matrixes or environmental surface samples tested during the validation study. Inclusivity and exclusivity testing was conducted with 117 and 36 isolates, respectively, which demonstrated that the SureTect Salmonella species Assay was able to detect all the major groups of Salmonella enterica subspecies enterica (e.g., Typhimurium) and the less common subspecies of S. enterica (e.g., arizoniae) and the rarely encountered S. bongori. None of the exclusivity isolates analyzed were detected by the SureTect Salmonella species Assay. Ruggedness testing was conducted to evaluate the performance of the assay with specific method deviations outside of the recommended parameters open to variation (enrichment time and temperature, and lysis temperature), which demonstrated that the assay gave reliable performance. Accelerated stability testing was additionally conducted, validating the assay shelf life. |
doi_str_mv | 10.5740/jaoacint.13-347 |
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This validation study was conducted using the AOAC Research Institute (RI) Performance Tested MethodsSM program to validate the SureTect Salmonella species Assay in comparison to the reference method detailed in International Organization for Standardization 6579:2002 in a variety of food matrixes, namely, raw ground beef, raw chicken breast, raw ground pork, fresh bagged lettuce, pork frankfurters, nonfat dried milk powder, cooked peeled shrimp, pasteurized liquid whole egg, ready-to-eat meal containing beef, and stainless steel surface samples. With the exception of liquid whole egg and fresh bagged lettuce, which were tested in-house, all matrixes were tested by Marshfield Food Safety, Marshfield, WI, on behalf of Thermo Fisher Scientific. In addition, three matrixes (pork frankfurters, lettuce, and stainless steel surface samples) were analyzed independently as part of the AOAC-RI-controlled laboratory study by the University of Guelph, Canada. No significant difference by probability of detection or McNemars Chi-squared statistical analysis was found between the candidate or reference methods for any of the food matrixes or environmental surface samples tested during the validation study. Inclusivity and exclusivity testing was conducted with 117 and 36 isolates, respectively, which demonstrated that the SureTect Salmonella species Assay was able to detect all the major groups of Salmonella enterica subspecies enterica (e.g., Typhimurium) and the less common subspecies of S. enterica (e.g., arizoniae) and the rarely encountered S. bongori. None of the exclusivity isolates analyzed were detected by the SureTect Salmonella species Assay. Ruggedness testing was conducted to evaluate the performance of the assay with specific method deviations outside of the recommended parameters open to variation (enrichment time and temperature, and lysis temperature), which demonstrated that the assay gave reliable performance. Accelerated stability testing was additionally conducted, validating the assay shelf life.</description><identifier>ISSN: 1060-3271</identifier><identifier>EISSN: 1944-7922</identifier><identifier>DOI: 10.5740/jaoacint.13-347</identifier><identifier>PMID: 29166999</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Biological assay ; Food contamination ; Food research ; Identification and classification ; Methods ; Microbiological research ; Polymerase chain reaction ; Salmonella</subject><ispartof>Journal of AOAC International, 2014-03, Vol.97 (2), p.539-560</ispartof><rights>COPYRIGHT 2014 Oxford University Press</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29166999$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cloke, Jonathan</creatorcontrib><creatorcontrib>Clark, Jr, Dorn</creatorcontrib><creatorcontrib>Radcliff, Roy</creatorcontrib><creatorcontrib>Leon-Velarde, Carlos</creatorcontrib><creatorcontrib>Larson, Nathan</creatorcontrib><creatorcontrib>Dave, Keron</creatorcontrib><creatorcontrib>Evans, Katharine</creatorcontrib><creatorcontrib>Crabtree, David</creatorcontrib><creatorcontrib>Hughes, Annette</creatorcontrib><creatorcontrib>Simpson, Helen</creatorcontrib><creatorcontrib>Holopainen, Jani</creatorcontrib><creatorcontrib>Wickstrand, Nina</creatorcontrib><creatorcontrib>Kauppinen, Mikko</creatorcontrib><title>Evaluation of the Thermo Scientific™ SureTect™ Salmonella species Assay</title><title>Journal of AOAC International</title><addtitle>J AOAC Int</addtitle><description>The Thermo Scientific™ SureTect™ Salmonella species Assay is a new real-time PCR assay for the detection of Salmonellae in food and environmental samples. This validation study was conducted using the AOAC Research Institute (RI) Performance Tested MethodsSM program to validate the SureTect Salmonella species Assay in comparison to the reference method detailed in International Organization for Standardization 6579:2002 in a variety of food matrixes, namely, raw ground beef, raw chicken breast, raw ground pork, fresh bagged lettuce, pork frankfurters, nonfat dried milk powder, cooked peeled shrimp, pasteurized liquid whole egg, ready-to-eat meal containing beef, and stainless steel surface samples. With the exception of liquid whole egg and fresh bagged lettuce, which were tested in-house, all matrixes were tested by Marshfield Food Safety, Marshfield, WI, on behalf of Thermo Fisher Scientific. In addition, three matrixes (pork frankfurters, lettuce, and stainless steel surface samples) were analyzed independently as part of the AOAC-RI-controlled laboratory study by the University of Guelph, Canada. No significant difference by probability of detection or McNemars Chi-squared statistical analysis was found between the candidate or reference methods for any of the food matrixes or environmental surface samples tested during the validation study. Inclusivity and exclusivity testing was conducted with 117 and 36 isolates, respectively, which demonstrated that the SureTect Salmonella species Assay was able to detect all the major groups of Salmonella enterica subspecies enterica (e.g., Typhimurium) and the less common subspecies of S. enterica (e.g., arizoniae) and the rarely encountered S. bongori. None of the exclusivity isolates analyzed were detected by the SureTect Salmonella species Assay. Ruggedness testing was conducted to evaluate the performance of the assay with specific method deviations outside of the recommended parameters open to variation (enrichment time and temperature, and lysis temperature), which demonstrated that the assay gave reliable performance. Accelerated stability testing was additionally conducted, validating the assay shelf life.</description><subject>Biological assay</subject><subject>Food contamination</subject><subject>Food research</subject><subject>Identification and classification</subject><subject>Methods</subject><subject>Microbiological research</subject><subject>Polymerase chain reaction</subject><subject>Salmonella</subject><issn>1060-3271</issn><issn>1944-7922</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNptkctKBDEQRYMovtfupMGNmx4rj0kmy0F8oeDCcR3SmYpGujtjp1tw75f4aX6JGUcFQWpRRXFucYtLyAGF0VgJOHmy0brQ9iPKSy7UGtmmWohSacbW8wwSSs4U3SI7KT0BCCqBbZItpqmUWuttcn32YuvB9iG2RfRF_4jF7BG7JhZ3LmDbBx_cx9t7cTd0OEPXf822bmKLdW2LtMCMpWKakn3dIxve1gn3v_suuT8_m51elje3F1en05vSMSVUKWA-rrwVwDRUgF4yZR1QUVGvvJszpyifCEBJrQeJ1Xhi6dgCsopr7hTju-R4dXfRxecBU2-akNzST4txSIZqqSYSNBMZPVqhD7ZGE1of-866JW6mXCqlNWU8U6N_qFxzbILLr_qQ938EJyuB62JKHXqz6EJju1dDwSyDMT_BGMpNDiYrDr89D1WD81_-Jwn-CeW8izQ</recordid><startdate>20140301</startdate><enddate>20140301</enddate><creator>Cloke, Jonathan</creator><creator>Clark, Jr, Dorn</creator><creator>Radcliff, Roy</creator><creator>Leon-Velarde, Carlos</creator><creator>Larson, Nathan</creator><creator>Dave, Keron</creator><creator>Evans, Katharine</creator><creator>Crabtree, David</creator><creator>Hughes, Annette</creator><creator>Simpson, Helen</creator><creator>Holopainen, Jani</creator><creator>Wickstrand, Nina</creator><creator>Kauppinen, Mikko</creator><general>Oxford University Press</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20140301</creationdate><title>Evaluation of the Thermo Scientific™ SureTect™ Salmonella species Assay</title><author>Cloke, Jonathan ; Clark, Jr, Dorn ; Radcliff, Roy ; Leon-Velarde, Carlos ; Larson, Nathan ; Dave, Keron ; Evans, Katharine ; Crabtree, David ; Hughes, Annette ; Simpson, Helen ; Holopainen, Jani ; Wickstrand, Nina ; Kauppinen, Mikko</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2747-40d5bfa40290b0ef627ac014b1f7fcd2c713840e61af06eb58a15a0e2b393c723</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Biological assay</topic><topic>Food contamination</topic><topic>Food research</topic><topic>Identification and classification</topic><topic>Methods</topic><topic>Microbiological research</topic><topic>Polymerase chain reaction</topic><topic>Salmonella</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cloke, Jonathan</creatorcontrib><creatorcontrib>Clark, Jr, Dorn</creatorcontrib><creatorcontrib>Radcliff, Roy</creatorcontrib><creatorcontrib>Leon-Velarde, Carlos</creatorcontrib><creatorcontrib>Larson, Nathan</creatorcontrib><creatorcontrib>Dave, Keron</creatorcontrib><creatorcontrib>Evans, Katharine</creatorcontrib><creatorcontrib>Crabtree, David</creatorcontrib><creatorcontrib>Hughes, Annette</creatorcontrib><creatorcontrib>Simpson, Helen</creatorcontrib><creatorcontrib>Holopainen, Jani</creatorcontrib><creatorcontrib>Wickstrand, Nina</creatorcontrib><creatorcontrib>Kauppinen, Mikko</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of AOAC International</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cloke, Jonathan</au><au>Clark, Jr, Dorn</au><au>Radcliff, Roy</au><au>Leon-Velarde, Carlos</au><au>Larson, Nathan</au><au>Dave, Keron</au><au>Evans, Katharine</au><au>Crabtree, David</au><au>Hughes, Annette</au><au>Simpson, Helen</au><au>Holopainen, Jani</au><au>Wickstrand, Nina</au><au>Kauppinen, Mikko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluation of the Thermo Scientific™ SureTect™ Salmonella species Assay</atitle><jtitle>Journal of AOAC International</jtitle><addtitle>J AOAC Int</addtitle><date>2014-03-01</date><risdate>2014</risdate><volume>97</volume><issue>2</issue><spage>539</spage><epage>560</epage><pages>539-560</pages><issn>1060-3271</issn><eissn>1944-7922</eissn><abstract>The Thermo Scientific™ SureTect™ Salmonella species Assay is a new real-time PCR assay for the detection of Salmonellae in food and environmental samples. This validation study was conducted using the AOAC Research Institute (RI) Performance Tested MethodsSM program to validate the SureTect Salmonella species Assay in comparison to the reference method detailed in International Organization for Standardization 6579:2002 in a variety of food matrixes, namely, raw ground beef, raw chicken breast, raw ground pork, fresh bagged lettuce, pork frankfurters, nonfat dried milk powder, cooked peeled shrimp, pasteurized liquid whole egg, ready-to-eat meal containing beef, and stainless steel surface samples. With the exception of liquid whole egg and fresh bagged lettuce, which were tested in-house, all matrixes were tested by Marshfield Food Safety, Marshfield, WI, on behalf of Thermo Fisher Scientific. In addition, three matrixes (pork frankfurters, lettuce, and stainless steel surface samples) were analyzed independently as part of the AOAC-RI-controlled laboratory study by the University of Guelph, Canada. No significant difference by probability of detection or McNemars Chi-squared statistical analysis was found between the candidate or reference methods for any of the food matrixes or environmental surface samples tested during the validation study. Inclusivity and exclusivity testing was conducted with 117 and 36 isolates, respectively, which demonstrated that the SureTect Salmonella species Assay was able to detect all the major groups of Salmonella enterica subspecies enterica (e.g., Typhimurium) and the less common subspecies of S. enterica (e.g., arizoniae) and the rarely encountered S. bongori. None of the exclusivity isolates analyzed were detected by the SureTect Salmonella species Assay. Ruggedness testing was conducted to evaluate the performance of the assay with specific method deviations outside of the recommended parameters open to variation (enrichment time and temperature, and lysis temperature), which demonstrated that the assay gave reliable performance. Accelerated stability testing was additionally conducted, validating the assay shelf life.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>29166999</pmid><doi>10.5740/jaoacint.13-347</doi><tpages>22</tpages><oa>free_for_read</oa></addata></record> |
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source | Oxford University Press Journals All Titles (1996-Current) |
subjects | Biological assay Food contamination Food research Identification and classification Methods Microbiological research Polymerase chain reaction Salmonella |
title | Evaluation of the Thermo Scientific™ SureTect™ Salmonella species Assay |
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