Enzymatic transformation of humic substances by NDO
Enzymatic transformation of humic acids (HA), fulvic acids (FA) and indole was examined using naphthalene 1,2-dioxygenase (NDO). NDO was used as a model for dioxygenase enzymes found in various microbial species. Indole was used as a model substrate for NDO-catalyzed reactions resulting in condensat...
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description | Enzymatic transformation of humic acids (HA), fulvic acids (FA) and indole was examined using naphthalene 1,2-dioxygenase (NDO). NDO was used as a model for dioxygenase enzymes found in various microbial species. Indole was used as a model substrate for NDO-catalyzed reactions resulting in condensation products. Although NDO is not classified as a soil enzyme, all HA and FA tested were susceptible to NDO-induced transformation. The extent of NDO-specific NADH oxidation in solutions containing HA and FA paralleled the percent aromaticity of the HA and FA. Furthermore, the UV–Vis absorptive properties of NDO-treated HA and FA were altered in a manner suggesting condensation reactions similar to the formation of indigo from indole. Condensation reactions were enhanced in NDO-treated mixtures containing indole and an FA. NDO retained activity for 2 weeks under ambient conditions, and retained some enzymatic activity for 9 days based on detection of specific metabolites by HPLC, suggesting prolonged extracellular activity. Humic substances have not previously been known to be substrates for dioxygenases; even more significant was that dioxygenase enzymes can facilitate condensation reactions between indole-like functional groups well-known to be present in HA and FA. These results illustrate how dioxygenases can be potential humic-modifying enzymes when released into the environment upon microbial death and concurrent cell lysis which could alter the bioavailability of organic contaminants associated with dissolved organic matter through specific modulation of enzyme activity involving substrate competition. |
doi_str_mv | 10.1016/j.soilbio.2008.04.017 |
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NDO was used as a model for dioxygenase enzymes found in various microbial species. Indole was used as a model substrate for NDO-catalyzed reactions resulting in condensation products. Although NDO is not classified as a soil enzyme, all HA and FA tested were susceptible to NDO-induced transformation. The extent of NDO-specific NADH oxidation in solutions containing HA and FA paralleled the percent aromaticity of the HA and FA. Furthermore, the UV–Vis absorptive properties of NDO-treated HA and FA were altered in a manner suggesting condensation reactions similar to the formation of indigo from indole. Condensation reactions were enhanced in NDO-treated mixtures containing indole and an FA. NDO retained activity for 2 weeks under ambient conditions, and retained some enzymatic activity for 9 days based on detection of specific metabolites by HPLC, suggesting prolonged extracellular activity. Humic substances have not previously been known to be substrates for dioxygenases; even more significant was that dioxygenase enzymes can facilitate condensation reactions between indole-like functional groups well-known to be present in HA and FA. These results illustrate how dioxygenases can be potential humic-modifying enzymes when released into the environment upon microbial death and concurrent cell lysis which could alter the bioavailability of organic contaminants associated with dissolved organic matter through specific modulation of enzyme activity involving substrate competition.</description><identifier>ISSN: 0038-0717</identifier><identifier>EISSN: 1879-3428</identifier><identifier>DOI: 10.1016/j.soilbio.2008.04.017</identifier><identifier>CODEN: SBIOAH</identifier><language>eng</language><publisher>Oxford: Elsevier Ltd</publisher><subject>Agronomy. Soil science and plant productions ; bioavailability ; Biochemistry and biology ; Biological and medical sciences ; Chemical, physicochemical, biochemical and biological properties ; Dissolved organic matter ; enzymatic treatment ; enzyme activity ; enzyme substrates ; Fulvic acids ; Fundamental and applied biological sciences. 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NDO was used as a model for dioxygenase enzymes found in various microbial species. Indole was used as a model substrate for NDO-catalyzed reactions resulting in condensation products. Although NDO is not classified as a soil enzyme, all HA and FA tested were susceptible to NDO-induced transformation. The extent of NDO-specific NADH oxidation in solutions containing HA and FA paralleled the percent aromaticity of the HA and FA. Furthermore, the UV–Vis absorptive properties of NDO-treated HA and FA were altered in a manner suggesting condensation reactions similar to the formation of indigo from indole. Condensation reactions were enhanced in NDO-treated mixtures containing indole and an FA. NDO retained activity for 2 weeks under ambient conditions, and retained some enzymatic activity for 9 days based on detection of specific metabolites by HPLC, suggesting prolonged extracellular activity. Humic substances have not previously been known to be substrates for dioxygenases; even more significant was that dioxygenase enzymes can facilitate condensation reactions between indole-like functional groups well-known to be present in HA and FA. These results illustrate how dioxygenases can be potential humic-modifying enzymes when released into the environment upon microbial death and concurrent cell lysis which could alter the bioavailability of organic contaminants associated with dissolved organic matter through specific modulation of enzyme activity involving substrate competition.</description><subject>Agronomy. Soil science and plant productions</subject><subject>bioavailability</subject><subject>Biochemistry and biology</subject><subject>Biological and medical sciences</subject><subject>Chemical, physicochemical, biochemical and biological properties</subject><subject>Dissolved organic matter</subject><subject>enzymatic treatment</subject><subject>enzyme activity</subject><subject>enzyme substrates</subject><subject>Fulvic acids</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Humic acids</subject><subject>humic substances</subject><subject>Humification</subject><subject>indigo</subject><subject>indoles</subject><subject>NAD (coenzyme)</subject><subject>naphthalene 1,2-dioxygenase</subject><subject>Naphthalene dioxygenase</subject><subject>oxidation</subject><subject>Physics, chemistry, biochemistry and biology of agricultural and forest soils</subject><subject>Soil enzyme activity</subject><subject>soil enzymes</subject><subject>soil microorganisms</subject><subject>Soil science</subject><subject>ultraviolet-visible spectroscopy</subject><issn>0038-0717</issn><issn>1879-3428</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqFkE1P3DAQQK2KSl1of0LVXMotYcb2xs4JIdgCEiqHlrPlOOPiVTamdrbS8uvr1a64chrNzJsPPca-IjQI2F6smxzD2IfYcADdgGwA1Qe2QK26WkiuT9gCQOgaFKpP7DTnNQDwJYoFE6vpdbexc3DVnOyUfUz7LE5V9NXzdlPqedvn2U6OctXvqp83j5_ZR2_HTF-O8Yw9_Vj9vr6rHx5v76-vHmonOjnXloYBCDUpgXrwspMaeycGbDlxLpSV6KVSvnOWlHJeaNUrz0m0dknd0Iszdn7Y-5Li3y3l2WxCdjSOdqK4zQa7tgWJsoDLA-hSzDmRNy8pbGzaGQSzV2TW5qjI7BUZkKYoKnPfjwdsdnb0RYAL-W2YwxK4BizctwPnbTT2TyrM0y9eGgAdR8lFIS4PBBUf_wIlk12g4mwIidxshhje-eU_PXCIJA</recordid><startdate>20080801</startdate><enddate>20080801</enddate><creator>AbuBakr, Samer</creator><creator>Macmil, Simone L.</creator><creator>Nanny, Mark A.</creator><creator>Duncan, Kathleen E.</creator><general>Elsevier Ltd</general><general>Elsevier Science</general><scope>FBQ</scope><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope></search><sort><creationdate>20080801</creationdate><title>Enzymatic transformation of humic substances by NDO</title><author>AbuBakr, Samer ; Macmil, Simone L. ; Nanny, Mark A. ; Duncan, Kathleen E.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c394t-aedd0e18e7318df49481bc3d162e2237a41f477f9cae77cf387b7f2e36a5e9db3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Agronomy. Soil science and plant productions</topic><topic>bioavailability</topic><topic>Biochemistry and biology</topic><topic>Biological and medical sciences</topic><topic>Chemical, physicochemical, biochemical and biological properties</topic><topic>Dissolved organic matter</topic><topic>enzymatic treatment</topic><topic>enzyme activity</topic><topic>enzyme substrates</topic><topic>Fulvic acids</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Humic acids</topic><topic>humic substances</topic><topic>Humification</topic><topic>indigo</topic><topic>indoles</topic><topic>NAD (coenzyme)</topic><topic>naphthalene 1,2-dioxygenase</topic><topic>Naphthalene dioxygenase</topic><topic>oxidation</topic><topic>Physics, chemistry, biochemistry and biology of agricultural and forest soils</topic><topic>Soil enzyme activity</topic><topic>soil enzymes</topic><topic>soil microorganisms</topic><topic>Soil science</topic><topic>ultraviolet-visible spectroscopy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>AbuBakr, Samer</creatorcontrib><creatorcontrib>Macmil, Simone L.</creatorcontrib><creatorcontrib>Nanny, Mark A.</creatorcontrib><creatorcontrib>Duncan, Kathleen E.</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Soil biology & biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>AbuBakr, Samer</au><au>Macmil, Simone L.</au><au>Nanny, Mark A.</au><au>Duncan, Kathleen E.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Enzymatic transformation of humic substances by NDO</atitle><jtitle>Soil biology & biochemistry</jtitle><date>2008-08-01</date><risdate>2008</risdate><volume>40</volume><issue>8</issue><spage>2055</spage><epage>2062</epage><pages>2055-2062</pages><issn>0038-0717</issn><eissn>1879-3428</eissn><coden>SBIOAH</coden><abstract>Enzymatic transformation of humic acids (HA), fulvic acids (FA) and indole was examined using naphthalene 1,2-dioxygenase (NDO). NDO was used as a model for dioxygenase enzymes found in various microbial species. Indole was used as a model substrate for NDO-catalyzed reactions resulting in condensation products. Although NDO is not classified as a soil enzyme, all HA and FA tested were susceptible to NDO-induced transformation. The extent of NDO-specific NADH oxidation in solutions containing HA and FA paralleled the percent aromaticity of the HA and FA. Furthermore, the UV–Vis absorptive properties of NDO-treated HA and FA were altered in a manner suggesting condensation reactions similar to the formation of indigo from indole. Condensation reactions were enhanced in NDO-treated mixtures containing indole and an FA. NDO retained activity for 2 weeks under ambient conditions, and retained some enzymatic activity for 9 days based on detection of specific metabolites by HPLC, suggesting prolonged extracellular activity. Humic substances have not previously been known to be substrates for dioxygenases; even more significant was that dioxygenase enzymes can facilitate condensation reactions between indole-like functional groups well-known to be present in HA and FA. These results illustrate how dioxygenases can be potential humic-modifying enzymes when released into the environment upon microbial death and concurrent cell lysis which could alter the bioavailability of organic contaminants associated with dissolved organic matter through specific modulation of enzyme activity involving substrate competition.</abstract><cop>Oxford</cop><cop>New York, NY</cop><pub>Elsevier Ltd</pub><doi>10.1016/j.soilbio.2008.04.017</doi><tpages>8</tpages></addata></record> |
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subjects | Agronomy. Soil science and plant productions bioavailability Biochemistry and biology Biological and medical sciences Chemical, physicochemical, biochemical and biological properties Dissolved organic matter enzymatic treatment enzyme activity enzyme substrates Fulvic acids Fundamental and applied biological sciences. Psychology Humic acids humic substances Humification indigo indoles NAD (coenzyme) naphthalene 1,2-dioxygenase Naphthalene dioxygenase oxidation Physics, chemistry, biochemistry and biology of agricultural and forest soils Soil enzyme activity soil enzymes soil microorganisms Soil science ultraviolet-visible spectroscopy |
title | Enzymatic transformation of humic substances by NDO |
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