Enzymatic transformation of humic substances by NDO

Enzymatic transformation of humic acids (HA), fulvic acids (FA) and indole was examined using naphthalene 1,2-dioxygenase (NDO). NDO was used as a model for dioxygenase enzymes found in various microbial species. Indole was used as a model substrate for NDO-catalyzed reactions resulting in condensat...

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Veröffentlicht in:Soil biology & biochemistry 2008-08, Vol.40 (8), p.2055-2062
Hauptverfasser: AbuBakr, Samer, Macmil, Simone L., Nanny, Mark A., Duncan, Kathleen E.
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Macmil, Simone L.
Nanny, Mark A.
Duncan, Kathleen E.
description Enzymatic transformation of humic acids (HA), fulvic acids (FA) and indole was examined using naphthalene 1,2-dioxygenase (NDO). NDO was used as a model for dioxygenase enzymes found in various microbial species. Indole was used as a model substrate for NDO-catalyzed reactions resulting in condensation products. Although NDO is not classified as a soil enzyme, all HA and FA tested were susceptible to NDO-induced transformation. The extent of NDO-specific NADH oxidation in solutions containing HA and FA paralleled the percent aromaticity of the HA and FA. Furthermore, the UV–Vis absorptive properties of NDO-treated HA and FA were altered in a manner suggesting condensation reactions similar to the formation of indigo from indole. Condensation reactions were enhanced in NDO-treated mixtures containing indole and an FA. NDO retained activity for 2 weeks under ambient conditions, and retained some enzymatic activity for 9 days based on detection of specific metabolites by HPLC, suggesting prolonged extracellular activity. Humic substances have not previously been known to be substrates for dioxygenases; even more significant was that dioxygenase enzymes can facilitate condensation reactions between indole-like functional groups well-known to be present in HA and FA. These results illustrate how dioxygenases can be potential humic-modifying enzymes when released into the environment upon microbial death and concurrent cell lysis which could alter the bioavailability of organic contaminants associated with dissolved organic matter through specific modulation of enzyme activity involving substrate competition.
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NDO was used as a model for dioxygenase enzymes found in various microbial species. Indole was used as a model substrate for NDO-catalyzed reactions resulting in condensation products. Although NDO is not classified as a soil enzyme, all HA and FA tested were susceptible to NDO-induced transformation. The extent of NDO-specific NADH oxidation in solutions containing HA and FA paralleled the percent aromaticity of the HA and FA. Furthermore, the UV–Vis absorptive properties of NDO-treated HA and FA were altered in a manner suggesting condensation reactions similar to the formation of indigo from indole. Condensation reactions were enhanced in NDO-treated mixtures containing indole and an FA. NDO retained activity for 2 weeks under ambient conditions, and retained some enzymatic activity for 9 days based on detection of specific metabolites by HPLC, suggesting prolonged extracellular activity. 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Humic substances have not previously been known to be substrates for dioxygenases; even more significant was that dioxygenase enzymes can facilitate condensation reactions between indole-like functional groups well-known to be present in HA and FA. These results illustrate how dioxygenases can be potential humic-modifying enzymes when released into the environment upon microbial death and concurrent cell lysis which could alter the bioavailability of organic contaminants associated with dissolved organic matter through specific modulation of enzyme activity involving substrate competition.</description><subject>Agronomy. Soil science and plant productions</subject><subject>bioavailability</subject><subject>Biochemistry and biology</subject><subject>Biological and medical sciences</subject><subject>Chemical, physicochemical, biochemical and biological properties</subject><subject>Dissolved organic matter</subject><subject>enzymatic treatment</subject><subject>enzyme activity</subject><subject>enzyme substrates</subject><subject>Fulvic acids</subject><subject>Fundamental and applied biological sciences. 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Psychology</topic><topic>Humic acids</topic><topic>humic substances</topic><topic>Humification</topic><topic>indigo</topic><topic>indoles</topic><topic>NAD (coenzyme)</topic><topic>naphthalene 1,2-dioxygenase</topic><topic>Naphthalene dioxygenase</topic><topic>oxidation</topic><topic>Physics, chemistry, biochemistry and biology of agricultural and forest soils</topic><topic>Soil enzyme activity</topic><topic>soil enzymes</topic><topic>soil microorganisms</topic><topic>Soil science</topic><topic>ultraviolet-visible spectroscopy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>AbuBakr, Samer</creatorcontrib><creatorcontrib>Macmil, Simone L.</creatorcontrib><creatorcontrib>Nanny, Mark A.</creatorcontrib><creatorcontrib>Duncan, Kathleen E.</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Soil biology &amp; biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>AbuBakr, Samer</au><au>Macmil, Simone L.</au><au>Nanny, Mark A.</au><au>Duncan, Kathleen E.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Enzymatic transformation of humic substances by NDO</atitle><jtitle>Soil biology &amp; biochemistry</jtitle><date>2008-08-01</date><risdate>2008</risdate><volume>40</volume><issue>8</issue><spage>2055</spage><epage>2062</epage><pages>2055-2062</pages><issn>0038-0717</issn><eissn>1879-3428</eissn><coden>SBIOAH</coden><abstract>Enzymatic transformation of humic acids (HA), fulvic acids (FA) and indole was examined using naphthalene 1,2-dioxygenase (NDO). 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subjects Agronomy. Soil science and plant productions
bioavailability
Biochemistry and biology
Biological and medical sciences
Chemical, physicochemical, biochemical and biological properties
Dissolved organic matter
enzymatic treatment
enzyme activity
enzyme substrates
Fulvic acids
Fundamental and applied biological sciences. Psychology
Humic acids
humic substances
Humification
indigo
indoles
NAD (coenzyme)
naphthalene 1,2-dioxygenase
Naphthalene dioxygenase
oxidation
Physics, chemistry, biochemistry and biology of agricultural and forest soils
Soil enzyme activity
soil enzymes
soil microorganisms
Soil science
ultraviolet-visible spectroscopy
title Enzymatic transformation of humic substances by NDO
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