FT-MIR and NIR spectral data fusion: a synergetic strategy for the geographical traceability of Panax notoginseng
Three data fusion strategies (low-llevel, mid-llevel, and high-llevel) combined with a multivariate classification algorithm (random forest, RF) were applied to authenticate the geographical origins of Panax notoginseng collected from five regions of Yunnan province in China. In low-level fusion, th...
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description | Three data fusion strategies (low-llevel, mid-llevel, and high-llevel) combined with a multivariate classification algorithm (random forest, RF) were applied to authenticate the geographical origins of
Panax notoginseng
collected from five regions of Yunnan province in China. In low-level fusion, the original data from two spectra (Fourier transform mid-IR spectrum and near-IR spectrum) were directly concatenated into a new matrix, which then was applied for the classification. Mid-level fusion was the strategy that inputted variables extracted from the spectral data into an RF classification model. The extracted variables were processed by iterate variable selection of the RF model and principal component analysis. The use of high-level fusion combined the decision making of each spectroscopic technique and resulted in an ensemble decision. The results showed that the mid-level and high-level data fusion take advantage of the information synergy from two spectroscopic techniques and had better classification performance than that of independent decision making. High-level data fusion is the most effective strategy since the classification results are better than those of the other fusion strategies: accuracy rates ranged between 93% and 96% for the low-level data fusion, between 95% and 98% for the mid-level data fusion, and between 98% and 100% for the high-level data fusion. In conclusion, the high-level data fusion strategy for Fourier transform mid-IR and near-IR spectra can be used as a reliable tool for correct geographical identification of
P. notoginseng
.
Graphical abstract
The analytical steps of Fourier transform mid-IR and near-IR spectral data fusion for the geographical traceability of
Panax notoginseng |
doi_str_mv | 10.1007/s00216-017-0692-0 |
format | Article |
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Panax notoginseng
collected from five regions of Yunnan province in China. In low-level fusion, the original data from two spectra (Fourier transform mid-IR spectrum and near-IR spectrum) were directly concatenated into a new matrix, which then was applied for the classification. Mid-level fusion was the strategy that inputted variables extracted from the spectral data into an RF classification model. The extracted variables were processed by iterate variable selection of the RF model and principal component analysis. The use of high-level fusion combined the decision making of each spectroscopic technique and resulted in an ensemble decision. The results showed that the mid-level and high-level data fusion take advantage of the information synergy from two spectroscopic techniques and had better classification performance than that of independent decision making. High-level data fusion is the most effective strategy since the classification results are better than those of the other fusion strategies: accuracy rates ranged between 93% and 96% for the low-level data fusion, between 95% and 98% for the mid-level data fusion, and between 98% and 100% for the high-level data fusion. In conclusion, the high-level data fusion strategy for Fourier transform mid-IR and near-IR spectra can be used as a reliable tool for correct geographical identification of
P. notoginseng
.
Graphical abstract
The analytical steps of Fourier transform mid-IR and near-IR spectral data fusion for the geographical traceability of
Panax notoginseng</description><identifier>ISSN: 1618-2642</identifier><identifier>EISSN: 1618-2650</identifier><identifier>DOI: 10.1007/s00216-017-0692-0</identifier><identifier>PMID: 29143877</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Analytical Chemistry ; Biochemistry ; Characterization and Evaluation of Materials ; Chemical properties ; Chemistry ; Chemistry and Materials Science ; China ; Classification ; Data integration ; Data Mining - methods ; Decision analysis ; Decision making ; Decision trees ; Electronics ; Food Science ; Fourier transforms ; Geographical distribution ; Infrared spectroscopy ; Korean ginseng ; Laboratory Medicine ; Levels ; Mathematical models ; Methods ; Military strategy ; Monitoring/Environmental Analysis ; Multisensor fusion ; Multivariate Analysis ; Panax notoginseng ; Panax notoginseng - chemistry ; Panax notoginseng - classification ; Plant extracts ; Principal components analysis ; Research Paper ; Spectra ; Spectroscopy ; Spectroscopy, Fourier Transform Infrared - methods ; Spectroscopy, Near-Infrared - methods ; Strategy</subject><ispartof>Analytical and bioanalytical chemistry, 2018-01, Vol.410 (1), p.91-103</ispartof><rights>Springer-Verlag GmbH Germany 2017</rights><rights>COPYRIGHT 2018 Springer</rights><rights>Analytical and Bioanalytical Chemistry is a copyright of Springer, (2017). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c542t-51ccdf1b32ad51df43735e04a5e14289292e944da82a3d68325160bcf81b41643</citedby><cites>FETCH-LOGICAL-c542t-51ccdf1b32ad51df43735e04a5e14289292e944da82a3d68325160bcf81b41643</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00216-017-0692-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00216-017-0692-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,782,786,27933,27934,41497,42566,51328</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29143877$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Yun</creatorcontrib><creatorcontrib>Zhang, Jin-Yu</creatorcontrib><creatorcontrib>Wang, Yuan-Zhong</creatorcontrib><title>FT-MIR and NIR spectral data fusion: a synergetic strategy for the geographical traceability of Panax notoginseng</title><title>Analytical and bioanalytical chemistry</title><addtitle>Anal Bioanal Chem</addtitle><addtitle>Anal Bioanal Chem</addtitle><description>Three data fusion strategies (low-llevel, mid-llevel, and high-llevel) combined with a multivariate classification algorithm (random forest, RF) were applied to authenticate the geographical origins of
Panax notoginseng
collected from five regions of Yunnan province in China. In low-level fusion, the original data from two spectra (Fourier transform mid-IR spectrum and near-IR spectrum) were directly concatenated into a new matrix, which then was applied for the classification. Mid-level fusion was the strategy that inputted variables extracted from the spectral data into an RF classification model. The extracted variables were processed by iterate variable selection of the RF model and principal component analysis. The use of high-level fusion combined the decision making of each spectroscopic technique and resulted in an ensemble decision. The results showed that the mid-level and high-level data fusion take advantage of the information synergy from two spectroscopic techniques and had better classification performance than that of independent decision making. High-level data fusion is the most effective strategy since the classification results are better than those of the other fusion strategies: accuracy rates ranged between 93% and 96% for the low-level data fusion, between 95% and 98% for the mid-level data fusion, and between 98% and 100% for the high-level data fusion. In conclusion, the high-level data fusion strategy for Fourier transform mid-IR and near-IR spectra can be used as a reliable tool for correct geographical identification of
P. notoginseng
.
Graphical abstract
The analytical steps of Fourier transform mid-IR and near-IR spectral data fusion for the geographical traceability of
Panax notoginseng</description><subject>Analytical Chemistry</subject><subject>Biochemistry</subject><subject>Characterization and Evaluation of Materials</subject><subject>Chemical properties</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>China</subject><subject>Classification</subject><subject>Data integration</subject><subject>Data Mining - methods</subject><subject>Decision analysis</subject><subject>Decision making</subject><subject>Decision trees</subject><subject>Electronics</subject><subject>Food Science</subject><subject>Fourier transforms</subject><subject>Geographical distribution</subject><subject>Infrared spectroscopy</subject><subject>Korean ginseng</subject><subject>Laboratory Medicine</subject><subject>Levels</subject><subject>Mathematical models</subject><subject>Methods</subject><subject>Military strategy</subject><subject>Monitoring/Environmental Analysis</subject><subject>Multisensor fusion</subject><subject>Multivariate Analysis</subject><subject>Panax notoginseng</subject><subject>Panax notoginseng - chemistry</subject><subject>Panax notoginseng - classification</subject><subject>Plant extracts</subject><subject>Principal components analysis</subject><subject>Research Paper</subject><subject>Spectra</subject><subject>Spectroscopy</subject><subject>Spectroscopy, Fourier Transform Infrared - methods</subject><subject>Spectroscopy, Near-Infrared - methods</subject><subject>Strategy</subject><issn>1618-2642</issn><issn>1618-2650</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kUtv1TAQhSMEouXCD2CDLLFhk-JxbMdhV1UUKpWHUFlbjjNOXeXat3Yi9f57HN1SHgJ5MdbMd45mdKrqJdAToLR9myllIGsKbU1lx2r6qDoGCapmUtDHD3_OjqpnOd9QCkKBfFodsQ54o9r2uLo9v6o_XXwjJgzkc6l5h3ZOZiKDmQ1xS_YxvCOG5H3ANOLsLcllPuO4Jy4mMl8jGTGOyeyuvS26MrRoej_5eU-iI19NMHckxDmOPmQM4_PqiTNTxhf3dVN9P39_dfaxvvzy4eLs9LK2grO5FmDt4KBvmBkEDI43bSOQciMQOFMd6xh2nA9GMdMMUjVMgKS9dQp6DpI3m-rNwXeX4u2CedZbny1OkwkYl6yhk4Jx1RXppnr9F3oTlxTKdivFO5Cq5b-o0UyofXBxvXU11aeCAVWt4LRQJ_-gyhtw620M6Hzp_yGAg8CmmHNCp3fJb03aa6B6jVkfYtYlZr3GrFfNq_uFl36Lw4PiZ64FYAcgl1EYMf120X9dfwB9tK-z</recordid><startdate>20180101</startdate><enddate>20180101</enddate><creator>Li, Yun</creator><creator>Zhang, Jin-Yu</creator><creator>Wang, Yuan-Zhong</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>7U7</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8BQ</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>F28</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H8D</scope><scope>H8G</scope><scope>HCIFZ</scope><scope>JG9</scope><scope>JQ2</scope><scope>K9.</scope><scope>KB.</scope><scope>KR7</scope><scope>L7M</scope><scope>LK8</scope><scope>L~C</scope><scope>L~D</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PDBOC</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope></search><sort><creationdate>20180101</creationdate><title>FT-MIR and NIR spectral data fusion: a synergetic strategy for the geographical traceability of Panax notoginseng</title><author>Li, Yun ; Zhang, Jin-Yu ; Wang, Yuan-Zhong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c542t-51ccdf1b32ad51df43735e04a5e14289292e944da82a3d68325160bcf81b41643</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Analytical Chemistry</topic><topic>Biochemistry</topic><topic>Characterization and Evaluation of Materials</topic><topic>Chemical properties</topic><topic>Chemistry</topic><topic>Chemistry and Materials Science</topic><topic>China</topic><topic>Classification</topic><topic>Data integration</topic><topic>Data Mining - methods</topic><topic>Decision analysis</topic><topic>Decision making</topic><topic>Decision trees</topic><topic>Electronics</topic><topic>Food Science</topic><topic>Fourier transforms</topic><topic>Geographical distribution</topic><topic>Infrared spectroscopy</topic><topic>Korean ginseng</topic><topic>Laboratory Medicine</topic><topic>Levels</topic><topic>Mathematical models</topic><topic>Methods</topic><topic>Military strategy</topic><topic>Monitoring/Environmental Analysis</topic><topic>Multisensor fusion</topic><topic>Multivariate Analysis</topic><topic>Panax notoginseng</topic><topic>Panax notoginseng - chemistry</topic><topic>Panax notoginseng - classification</topic><topic>Plant extracts</topic><topic>Principal components analysis</topic><topic>Research Paper</topic><topic>Spectra</topic><topic>Spectroscopy</topic><topic>Spectroscopy, Fourier Transform Infrared - methods</topic><topic>Spectroscopy, Near-Infrared - methods</topic><topic>Strategy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Yun</creatorcontrib><creatorcontrib>Zhang, Jin-Yu</creatorcontrib><creatorcontrib>Wang, Yuan-Zhong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>SciTech Premium Collection</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>ProQuest Biological Science Collection</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Materials Science Collection</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><jtitle>Analytical and bioanalytical chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Yun</au><au>Zhang, Jin-Yu</au><au>Wang, Yuan-Zhong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>FT-MIR and NIR spectral data fusion: a synergetic strategy for the geographical traceability of Panax notoginseng</atitle><jtitle>Analytical and bioanalytical chemistry</jtitle><stitle>Anal Bioanal Chem</stitle><addtitle>Anal Bioanal Chem</addtitle><date>2018-01-01</date><risdate>2018</risdate><volume>410</volume><issue>1</issue><spage>91</spage><epage>103</epage><pages>91-103</pages><issn>1618-2642</issn><eissn>1618-2650</eissn><abstract>Three data fusion strategies (low-llevel, mid-llevel, and high-llevel) combined with a multivariate classification algorithm (random forest, RF) were applied to authenticate the geographical origins of
Panax notoginseng
collected from five regions of Yunnan province in China. In low-level fusion, the original data from two spectra (Fourier transform mid-IR spectrum and near-IR spectrum) were directly concatenated into a new matrix, which then was applied for the classification. Mid-level fusion was the strategy that inputted variables extracted from the spectral data into an RF classification model. The extracted variables were processed by iterate variable selection of the RF model and principal component analysis. The use of high-level fusion combined the decision making of each spectroscopic technique and resulted in an ensemble decision. The results showed that the mid-level and high-level data fusion take advantage of the information synergy from two spectroscopic techniques and had better classification performance than that of independent decision making. High-level data fusion is the most effective strategy since the classification results are better than those of the other fusion strategies: accuracy rates ranged between 93% and 96% for the low-level data fusion, between 95% and 98% for the mid-level data fusion, and between 98% and 100% for the high-level data fusion. In conclusion, the high-level data fusion strategy for Fourier transform mid-IR and near-IR spectra can be used as a reliable tool for correct geographical identification of
P. notoginseng
.
Graphical abstract
The analytical steps of Fourier transform mid-IR and near-IR spectral data fusion for the geographical traceability of
Panax notoginseng</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>29143877</pmid><doi>10.1007/s00216-017-0692-0</doi><tpages>13</tpages></addata></record> |
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subjects | Analytical Chemistry Biochemistry Characterization and Evaluation of Materials Chemical properties Chemistry Chemistry and Materials Science China Classification Data integration Data Mining - methods Decision analysis Decision making Decision trees Electronics Food Science Fourier transforms Geographical distribution Infrared spectroscopy Korean ginseng Laboratory Medicine Levels Mathematical models Methods Military strategy Monitoring/Environmental Analysis Multisensor fusion Multivariate Analysis Panax notoginseng Panax notoginseng - chemistry Panax notoginseng - classification Plant extracts Principal components analysis Research Paper Spectra Spectroscopy Spectroscopy, Fourier Transform Infrared - methods Spectroscopy, Near-Infrared - methods Strategy |
title | FT-MIR and NIR spectral data fusion: a synergetic strategy for the geographical traceability of Panax notoginseng |
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