Haplotype analysis of the germacrene A synthase gene and association with cynaropicrin content and biological activities in Cynara cardunculus
Cynara cardunculus : L. represents a natural source of terpenic compounds, with the predominant molecule being cynaropicrin. Cynaropicrin is gaining interest since it has been correlated to anti-hyperlipidaemia, antispasmodic and cytotoxicity activity against leukocyte cancer cells. The objective of...
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creator | Ferro, Ana Margarida Ramos, Patrícia Guerra, Ângela Parreira, Paula Brás, Teresa Guerreiro, Olinda Jerónimo, Eliana Capel, Carmen Capel, Juan Yuste-Lisbona, Fernando J. Duarte, Maria F. Lozano, Rafael Oliveira, M. Margarida Gonçalves, Sónia |
description | Cynara cardunculus
: L. represents a natural source of terpenic compounds, with the predominant molecule being cynaropicrin. Cynaropicrin is gaining interest since it has been correlated to anti-hyperlipidaemia, antispasmodic and cytotoxicity activity against leukocyte cancer cells. The objective of this work was to screen a collection of
C. cardunculus
, from different origins, for new allelic variants in
germacrene A synthase
(
GAS
) gene involved in the cynaropicrin biosynthesis and correlate them with improved cynaropicrin content and biological activities. Using high-resolution melting, nine haplotypes were identified. The putative impact of the identified allelic variants in GAS protein was evaluated by bioinformatic tools and polymorphisms that putatively lead to protein conformational changes were described. Additionally, cynaropicrin and main pentacyclic triterpenes contents, and antithrombin, antimicrobial and antiproliferative activities were also determined in
C. cardunculus
leaf lipophilic-derived extracts. In this work we identified allelic variants with putative impact on GAS protein, which are significantly associated with cynaropicrin content and antiproliferative activity. The results obtained suggest that the identified polymorphisms should be explored as putative genetic markers correlated with biological properties in
Cynara cardunculus
. |
doi_str_mv | 10.1007/s00438-017-1388-z |
format | Article |
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: L. represents a natural source of terpenic compounds, with the predominant molecule being cynaropicrin. Cynaropicrin is gaining interest since it has been correlated to anti-hyperlipidaemia, antispasmodic and cytotoxicity activity against leukocyte cancer cells. The objective of this work was to screen a collection of
C. cardunculus
, from different origins, for new allelic variants in
germacrene A synthase
(
GAS
) gene involved in the cynaropicrin biosynthesis and correlate them with improved cynaropicrin content and biological activities. Using high-resolution melting, nine haplotypes were identified. The putative impact of the identified allelic variants in GAS protein was evaluated by bioinformatic tools and polymorphisms that putatively lead to protein conformational changes were described. Additionally, cynaropicrin and main pentacyclic triterpenes contents, and antithrombin, antimicrobial and antiproliferative activities were also determined in
C. cardunculus
leaf lipophilic-derived extracts. In this work we identified allelic variants with putative impact on GAS protein, which are significantly associated with cynaropicrin content and antiproliferative activity. The results obtained suggest that the identified polymorphisms should be explored as putative genetic markers correlated with biological properties in
Cynara cardunculus
.</description><identifier>ISSN: 1617-4615</identifier><identifier>EISSN: 1617-4623</identifier><identifier>DOI: 10.1007/s00438-017-1388-z</identifier><identifier>PMID: 29143866</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Animal Genetics and Genomics ; Antithrombin ; Biochemistry ; Biomarkers ; Biomedical and Life Sciences ; Cancer ; Cynara cardunculus ; Cytotoxicity ; Genetic markers ; Germacrene ; Haplotypes ; Human Genetics ; Hyperlipidemia ; Life Sciences ; Lipophilic ; Microbial Genetics and Genomics ; Muscle relaxants ; Original Article ; Parasympathetic nervous system ; Plant Genetics and Genomics ; Proteins ; Terpenic compounds ; Triterpenes</subject><ispartof>Molecular genetics and genomics : MGG, 2018-04, Vol.293 (2), p.417-433</ispartof><rights>Springer-Verlag GmbH Germany 2017</rights><rights>Molecular Genetics and Genomics is a copyright of Springer, (2017). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c372t-13443e96491fc7d6774c75871d565babcb66b3f524c6ba3577dda3df2690ee6a3</citedby><cites>FETCH-LOGICAL-c372t-13443e96491fc7d6774c75871d565babcb66b3f524c6ba3577dda3df2690ee6a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00438-017-1388-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00438-017-1388-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27922,27923,41486,42555,51317</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29143866$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ferro, Ana Margarida</creatorcontrib><creatorcontrib>Ramos, Patrícia</creatorcontrib><creatorcontrib>Guerra, Ângela</creatorcontrib><creatorcontrib>Parreira, Paula</creatorcontrib><creatorcontrib>Brás, Teresa</creatorcontrib><creatorcontrib>Guerreiro, Olinda</creatorcontrib><creatorcontrib>Jerónimo, Eliana</creatorcontrib><creatorcontrib>Capel, Carmen</creatorcontrib><creatorcontrib>Capel, Juan</creatorcontrib><creatorcontrib>Yuste-Lisbona, Fernando J.</creatorcontrib><creatorcontrib>Duarte, Maria F.</creatorcontrib><creatorcontrib>Lozano, Rafael</creatorcontrib><creatorcontrib>Oliveira, M. Margarida</creatorcontrib><creatorcontrib>Gonçalves, Sónia</creatorcontrib><title>Haplotype analysis of the germacrene A synthase gene and association with cynaropicrin content and biological activities in Cynara cardunculus</title><title>Molecular genetics and genomics : MGG</title><addtitle>Mol Genet Genomics</addtitle><addtitle>Mol Genet Genomics</addtitle><description>Cynara cardunculus
: L. represents a natural source of terpenic compounds, with the predominant molecule being cynaropicrin. Cynaropicrin is gaining interest since it has been correlated to anti-hyperlipidaemia, antispasmodic and cytotoxicity activity against leukocyte cancer cells. The objective of this work was to screen a collection of
C. cardunculus
, from different origins, for new allelic variants in
germacrene A synthase
(
GAS
) gene involved in the cynaropicrin biosynthesis and correlate them with improved cynaropicrin content and biological activities. Using high-resolution melting, nine haplotypes were identified. The putative impact of the identified allelic variants in GAS protein was evaluated by bioinformatic tools and polymorphisms that putatively lead to protein conformational changes were described. Additionally, cynaropicrin and main pentacyclic triterpenes contents, and antithrombin, antimicrobial and antiproliferative activities were also determined in
C. cardunculus
leaf lipophilic-derived extracts. In this work we identified allelic variants with putative impact on GAS protein, which are significantly associated with cynaropicrin content and antiproliferative activity. The results obtained suggest that the identified polymorphisms should be explored as putative genetic markers correlated with biological properties in
Cynara cardunculus
.</description><subject>Animal Genetics and Genomics</subject><subject>Antithrombin</subject><subject>Biochemistry</subject><subject>Biomarkers</subject><subject>Biomedical and Life Sciences</subject><subject>Cancer</subject><subject>Cynara cardunculus</subject><subject>Cytotoxicity</subject><subject>Genetic markers</subject><subject>Germacrene</subject><subject>Haplotypes</subject><subject>Human Genetics</subject><subject>Hyperlipidemia</subject><subject>Life Sciences</subject><subject>Lipophilic</subject><subject>Microbial Genetics and Genomics</subject><subject>Muscle relaxants</subject><subject>Original Article</subject><subject>Parasympathetic nervous system</subject><subject>Plant Genetics and Genomics</subject><subject>Proteins</subject><subject>Terpenic compounds</subject><subject>Triterpenes</subject><issn>1617-4615</issn><issn>1617-4623</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kctu3CAUhlGVqrm0D9BNhdRNN07B2GAvo1HaRIqUTbtGxxhniDzgcnArz0P0mYMzaRRVyorb958DfIR85OycM6a-ImOVaArGVcFF0xT7N-SEy7yqZCmOnue8PianiPcsg7JU78hx2fIclPKE_L2CaQxpmSwFD-OCDmkYaNpaemfjDky03tILiotPW8B1169oTwExGAfJBU__uLSlZvEQw-RMdJ6a4JP16ZHsXBjDnTMwUjDJ_XbJWaQZ2qwJoAZiP3szjzO-J28HGNF-eBrPyM9vlz82V8XN7ffrzcVNYYQqU35tVQnbyqrlg1G9VKoyqm4U72tZd9CZTspODHVZGdmBqJXqexD9UMqWWStBnJEvh7pTDL9mi0nvHBo7juBtmFHzVuZw07Iyo5__Q-_DHPNfPVL5BqytZab4gTIxIEY76Cm6HcRFc6ZXWfogS2cHepWl9znz6any3O1s_5z4ZycD5QHAfOSzjxetX636AFPxoqY</recordid><startdate>20180401</startdate><enddate>20180401</enddate><creator>Ferro, Ana Margarida</creator><creator>Ramos, Patrícia</creator><creator>Guerra, Ângela</creator><creator>Parreira, Paula</creator><creator>Brás, Teresa</creator><creator>Guerreiro, Olinda</creator><creator>Jerónimo, Eliana</creator><creator>Capel, Carmen</creator><creator>Capel, Juan</creator><creator>Yuste-Lisbona, Fernando J.</creator><creator>Duarte, Maria F.</creator><creator>Lozano, Rafael</creator><creator>Oliveira, M. Margarida</creator><creator>Gonçalves, Sónia</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20180401</creationdate><title>Haplotype analysis of the germacrene A synthase gene and association with cynaropicrin content and biological activities in Cynara cardunculus</title><author>Ferro, Ana Margarida ; Ramos, Patrícia ; Guerra, Ângela ; Parreira, Paula ; Brás, Teresa ; Guerreiro, Olinda ; Jerónimo, Eliana ; Capel, Carmen ; Capel, Juan ; Yuste-Lisbona, Fernando J. ; Duarte, Maria F. ; Lozano, Rafael ; Oliveira, M. 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Margarida</au><au>Gonçalves, Sónia</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Haplotype analysis of the germacrene A synthase gene and association with cynaropicrin content and biological activities in Cynara cardunculus</atitle><jtitle>Molecular genetics and genomics : MGG</jtitle><stitle>Mol Genet Genomics</stitle><addtitle>Mol Genet Genomics</addtitle><date>2018-04-01</date><risdate>2018</risdate><volume>293</volume><issue>2</issue><spage>417</spage><epage>433</epage><pages>417-433</pages><issn>1617-4615</issn><eissn>1617-4623</eissn><abstract>Cynara cardunculus
: L. represents a natural source of terpenic compounds, with the predominant molecule being cynaropicrin. Cynaropicrin is gaining interest since it has been correlated to anti-hyperlipidaemia, antispasmodic and cytotoxicity activity against leukocyte cancer cells. The objective of this work was to screen a collection of
C. cardunculus
, from different origins, for new allelic variants in
germacrene A synthase
(
GAS
) gene involved in the cynaropicrin biosynthesis and correlate them with improved cynaropicrin content and biological activities. Using high-resolution melting, nine haplotypes were identified. The putative impact of the identified allelic variants in GAS protein was evaluated by bioinformatic tools and polymorphisms that putatively lead to protein conformational changes were described. Additionally, cynaropicrin and main pentacyclic triterpenes contents, and antithrombin, antimicrobial and antiproliferative activities were also determined in
C. cardunculus
leaf lipophilic-derived extracts. In this work we identified allelic variants with putative impact on GAS protein, which are significantly associated with cynaropicrin content and antiproliferative activity. The results obtained suggest that the identified polymorphisms should be explored as putative genetic markers correlated with biological properties in
Cynara cardunculus
.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>29143866</pmid><doi>10.1007/s00438-017-1388-z</doi><tpages>17</tpages></addata></record> |
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subjects | Animal Genetics and Genomics Antithrombin Biochemistry Biomarkers Biomedical and Life Sciences Cancer Cynara cardunculus Cytotoxicity Genetic markers Germacrene Haplotypes Human Genetics Hyperlipidemia Life Sciences Lipophilic Microbial Genetics and Genomics Muscle relaxants Original Article Parasympathetic nervous system Plant Genetics and Genomics Proteins Terpenic compounds Triterpenes |
title | Haplotype analysis of the germacrene A synthase gene and association with cynaropicrin content and biological activities in Cynara cardunculus |
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