Devosia geojensis sp. nov., isolated from diesel-contaminated soil in Korea
1 Division of Applied Life Science, EB-NCRC, PMBBRC, Gyeongsang National University, Jinju 660-701, Republic of Korea 2 Jeju Hi-Tech Industry Development Institute, 4-8 Ara-1 dong, Jeju 690-121, Republic of Korea 3 Division of Environmental Science and Ecological Engineering, Korea University, Seoul...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2008-03, Vol.58 (3), p.633-636 |
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| creator | Ryu, Seung Hyun Chung, Bok Sil Le, Ngoc Thuan Jang, Ho Hee Yun, Pil-Yong Park, Woojun Jeon, Che Ok |
| description | 1 Division of Applied Life Science, EB-NCRC, PMBBRC, Gyeongsang National University, Jinju 660-701, Republic of Korea
2 Jeju Hi-Tech Industry Development Institute, 4-8 Ara-1 dong, Jeju 690-121, Republic of Korea
3 Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701, Republic of Korea
Correspondence Che Ok Jeon cojeon{at}gnu.ac.kr
A Gram-negative, strictly aerobic, non-spore-forming bacterium, designated strain BD-c194 T , was isolated from diesel-contaminated soil in Geoje, Korea. The cells were short, motile rods with single polar flagella. Growth of strain BD-c194 T was observed between 15 and 45 °C (optimally at 30–35 °C) and between pH 6.0 and 9.5 (optimally at pH 7.5–9.0). The predominant fatty acids were 11-methyl C 18 : 1 7c , C 16 : 0 , C 18 : 1 7c , C 18 : 0 and an unknown fatty acid (equivalent chain-length 18.814); a large amount of phosphatidylglycerol and a small amount of diphosphatidylglycerol were present as polar lipids. The G+C content of the genomic DNA was 60.8 mol% and the major isoprenoid quinone was Q-10. A comparative 16S rRNA gene sequence analysis showed that strain BD-c194 T formed a well-defined phyletic lineage within the genus Devosia (with 100 % bootstrap support). The levels of 16S rRNA gene sequence similarity with respect to the type strains of other Devosia species ranged from 95.0 to 96.1 %. On the basis of chemotaxonomic data and molecular properties, strain BD-c194 T represents a novel species within the genus Devosia , for which the name Devosia geojensis sp. nov. is proposed. The type strain is BD-c194 T (=KCTC 22082 T =DSM 19414 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain BD-c194 T is EF575560 .
A transmission electron micrograph of negatively stained cells of strain BD-c194 T and a table comparing the cellular fatty acid compositions of strain BD-c194 T and type strains of related Devosia species are available as supplementary material with the online version of this paper. |
| doi_str_mv | 10.1099/ijs.0.65481-0 |
| format | Article |
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2 Jeju Hi-Tech Industry Development Institute, 4-8 Ara-1 dong, Jeju 690-121, Republic of Korea
3 Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701, Republic of Korea
Correspondence Che Ok Jeon cojeon{at}gnu.ac.kr
A Gram-negative, strictly aerobic, non-spore-forming bacterium, designated strain BD-c194 T , was isolated from diesel-contaminated soil in Geoje, Korea. The cells were short, motile rods with single polar flagella. Growth of strain BD-c194 T was observed between 15 and 45 °C (optimally at 30–35 °C) and between pH 6.0 and 9.5 (optimally at pH 7.5–9.0). The predominant fatty acids were 11-methyl C 18 : 1 7c , C 16 : 0 , C 18 : 1 7c , C 18 : 0 and an unknown fatty acid (equivalent chain-length 18.814); a large amount of phosphatidylglycerol and a small amount of diphosphatidylglycerol were present as polar lipids. The G+C content of the genomic DNA was 60.8 mol% and the major isoprenoid quinone was Q-10. A comparative 16S rRNA gene sequence analysis showed that strain BD-c194 T formed a well-defined phyletic lineage within the genus Devosia (with 100 % bootstrap support). The levels of 16S rRNA gene sequence similarity with respect to the type strains of other Devosia species ranged from 95.0 to 96.1 %. On the basis of chemotaxonomic data and molecular properties, strain BD-c194 T represents a novel species within the genus Devosia , for which the name Devosia geojensis sp. nov. is proposed. The type strain is BD-c194 T (=KCTC 22082 T =DSM 19414 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain BD-c194 T is EF575560 .
A transmission electron micrograph of negatively stained cells of strain BD-c194 T and a table comparing the cellular fatty acid compositions of strain BD-c194 T and type strains of related Devosia species are available as supplementary material with the online version of this paper.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.65481-0</identifier><identifier>PMID: 18319469</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Bacterial Typing Techniques ; Bacteriology ; Base Composition ; Biological and medical sciences ; Devosia ; DNA, Bacterial - analysis ; DNA, Ribosomal - analysis ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Gasoline ; Genes, rRNA ; Genotype ; Hyphomicrobiaceae - classification ; Hyphomicrobiaceae - genetics ; Hyphomicrobiaceae - isolation & purification ; Hyphomicrobiaceae - physiology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Phenotype ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Soil Pollutants ; Species Specificity ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2008-03, Vol.58 (3), p.633-636</ispartof><rights>2008 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c423t-52d09c0eadb12818ad7c66d69e045d6d6cffe150f75a8c67c489069d70c10eca3</citedby><cites>FETCH-LOGICAL-c423t-52d09c0eadb12818ad7c66d69e045d6d6cffe150f75a8c67c489069d70c10eca3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3732,3733,27903,27904</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=20189001$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18319469$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ryu, Seung Hyun</creatorcontrib><creatorcontrib>Chung, Bok Sil</creatorcontrib><creatorcontrib>Le, Ngoc Thuan</creatorcontrib><creatorcontrib>Jang, Ho Hee</creatorcontrib><creatorcontrib>Yun, Pil-Yong</creatorcontrib><creatorcontrib>Park, Woojun</creatorcontrib><creatorcontrib>Jeon, Che Ok</creatorcontrib><title>Devosia geojensis sp. nov., isolated from diesel-contaminated soil in Korea</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Division of Applied Life Science, EB-NCRC, PMBBRC, Gyeongsang National University, Jinju 660-701, Republic of Korea
2 Jeju Hi-Tech Industry Development Institute, 4-8 Ara-1 dong, Jeju 690-121, Republic of Korea
3 Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701, Republic of Korea
Correspondence Che Ok Jeon cojeon{at}gnu.ac.kr
A Gram-negative, strictly aerobic, non-spore-forming bacterium, designated strain BD-c194 T , was isolated from diesel-contaminated soil in Geoje, Korea. The cells were short, motile rods with single polar flagella. Growth of strain BD-c194 T was observed between 15 and 45 °C (optimally at 30–35 °C) and between pH 6.0 and 9.5 (optimally at pH 7.5–9.0). The predominant fatty acids were 11-methyl C 18 : 1 7c , C 16 : 0 , C 18 : 1 7c , C 18 : 0 and an unknown fatty acid (equivalent chain-length 18.814); a large amount of phosphatidylglycerol and a small amount of diphosphatidylglycerol were present as polar lipids. The G+C content of the genomic DNA was 60.8 mol% and the major isoprenoid quinone was Q-10. A comparative 16S rRNA gene sequence analysis showed that strain BD-c194 T formed a well-defined phyletic lineage within the genus Devosia (with 100 % bootstrap support). The levels of 16S rRNA gene sequence similarity with respect to the type strains of other Devosia species ranged from 95.0 to 96.1 %. On the basis of chemotaxonomic data and molecular properties, strain BD-c194 T represents a novel species within the genus Devosia , for which the name Devosia geojensis sp. nov. is proposed. The type strain is BD-c194 T (=KCTC 22082 T =DSM 19414 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain BD-c194 T is EF575560 .
A transmission electron micrograph of negatively stained cells of strain BD-c194 T and a table comparing the cellular fatty acid compositions of strain BD-c194 T and type strains of related Devosia species are available as supplementary material with the online version of this paper.</description><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Devosia</subject><subject>DNA, Bacterial - analysis</subject><subject>DNA, Ribosomal - analysis</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gasoline</subject><subject>Genes, rRNA</subject><subject>Genotype</subject><subject>Hyphomicrobiaceae - classification</subject><subject>Hyphomicrobiaceae - genetics</subject><subject>Hyphomicrobiaceae - isolation & purification</subject><subject>Hyphomicrobiaceae - physiology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Phenotype</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Soil Pollutants</subject><subject>Species Specificity</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpF0E1PwzAMBuAIgfg-ckW9ABdanDbNmiManwKJC5yjLHFHprYZ8TbEvyewCU6x4ke29TJ2wqHgoNSVn1EBhaxFw3PYYvtcSJnXUIntv7qUe-yAaAaQPgB22R5vKq6EVPvs6QZXgbzJphhmOJCnjOZFNoRVcZl5Cp1ZoMvaGPrMeSTschuGhen98Nug4LvMD9lTiGiO2E5rOsLjzXvI3u5uX8cP-fPL_eP4-jm3oqwWeV06UBbQuAkvG94YN7JSOqkQRO1SYdsWeQ3tqDaNlSMrGgVSuRFYDmhNdcjO13PnMXwskRa692Sx68yAYUmaK8mFUCLBfA1tDEQRWz2PvjfxS3PQP-nplJ4G_ZuehuRPN4OXkx7dv97ElcDZBhiypmujGaynP1cCT6cCT-5i7d799P3TR9RTHHqfzpj48LO0bnSlZVVV3_fwhZ0</recordid><startdate>20080301</startdate><enddate>20080301</enddate><creator>Ryu, Seung Hyun</creator><creator>Chung, Bok Sil</creator><creator>Le, Ngoc Thuan</creator><creator>Jang, Ho Hee</creator><creator>Yun, Pil-Yong</creator><creator>Park, Woojun</creator><creator>Jeon, Che Ok</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20080301</creationdate><title>Devosia geojensis sp. nov., isolated from diesel-contaminated soil in Korea</title><author>Ryu, Seung Hyun ; Chung, Bok Sil ; Le, Ngoc Thuan ; Jang, Ho Hee ; Yun, Pil-Yong ; Park, Woojun ; Jeon, Che Ok</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c423t-52d09c0eadb12818ad7c66d69e045d6d6cffe150f75a8c67c489069d70c10eca3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Devosia</topic><topic>DNA, Bacterial - analysis</topic><topic>DNA, Ribosomal - analysis</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gasoline</topic><topic>Genes, rRNA</topic><topic>Genotype</topic><topic>Hyphomicrobiaceae - classification</topic><topic>Hyphomicrobiaceae - genetics</topic><topic>Hyphomicrobiaceae - isolation & purification</topic><topic>Hyphomicrobiaceae - physiology</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Phenotype</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Soil Pollutants</topic><topic>Species Specificity</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ryu, Seung Hyun</creatorcontrib><creatorcontrib>Chung, Bok Sil</creatorcontrib><creatorcontrib>Le, Ngoc Thuan</creatorcontrib><creatorcontrib>Jang, Ho Hee</creatorcontrib><creatorcontrib>Yun, Pil-Yong</creatorcontrib><creatorcontrib>Park, Woojun</creatorcontrib><creatorcontrib>Jeon, Che Ok</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ryu, Seung Hyun</au><au>Chung, Bok Sil</au><au>Le, Ngoc Thuan</au><au>Jang, Ho Hee</au><au>Yun, Pil-Yong</au><au>Park, Woojun</au><au>Jeon, Che Ok</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Devosia geojensis sp. nov., isolated from diesel-contaminated soil in Korea</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2008-03-01</date><risdate>2008</risdate><volume>58</volume><issue>3</issue><spage>633</spage><epage>636</epage><pages>633-636</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Division of Applied Life Science, EB-NCRC, PMBBRC, Gyeongsang National University, Jinju 660-701, Republic of Korea
2 Jeju Hi-Tech Industry Development Institute, 4-8 Ara-1 dong, Jeju 690-121, Republic of Korea
3 Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701, Republic of Korea
Correspondence Che Ok Jeon cojeon{at}gnu.ac.kr
A Gram-negative, strictly aerobic, non-spore-forming bacterium, designated strain BD-c194 T , was isolated from diesel-contaminated soil in Geoje, Korea. The cells were short, motile rods with single polar flagella. Growth of strain BD-c194 T was observed between 15 and 45 °C (optimally at 30–35 °C) and between pH 6.0 and 9.5 (optimally at pH 7.5–9.0). The predominant fatty acids were 11-methyl C 18 : 1 7c , C 16 : 0 , C 18 : 1 7c , C 18 : 0 and an unknown fatty acid (equivalent chain-length 18.814); a large amount of phosphatidylglycerol and a small amount of diphosphatidylglycerol were present as polar lipids. The G+C content of the genomic DNA was 60.8 mol% and the major isoprenoid quinone was Q-10. A comparative 16S rRNA gene sequence analysis showed that strain BD-c194 T formed a well-defined phyletic lineage within the genus Devosia (with 100 % bootstrap support). The levels of 16S rRNA gene sequence similarity with respect to the type strains of other Devosia species ranged from 95.0 to 96.1 %. On the basis of chemotaxonomic data and molecular properties, strain BD-c194 T represents a novel species within the genus Devosia , for which the name Devosia geojensis sp. nov. is proposed. The type strain is BD-c194 T (=KCTC 22082 T =DSM 19414 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain BD-c194 T is EF575560 .
A transmission electron micrograph of negatively stained cells of strain BD-c194 T and a table comparing the cellular fatty acid compositions of strain BD-c194 T and type strains of related Devosia species are available as supplementary material with the online version of this paper.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>18319469</pmid><doi>10.1099/ijs.0.65481-0</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Bacterial Typing Techniques Bacteriology Base Composition Biological and medical sciences Devosia DNA, Bacterial - analysis DNA, Ribosomal - analysis Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Gasoline Genes, rRNA Genotype Hyphomicrobiaceae - classification Hyphomicrobiaceae - genetics Hyphomicrobiaceae - isolation & purification Hyphomicrobiaceae - physiology Microbiology Miscellaneous Molecular Sequence Data Phenotype Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Soil Pollutants Species Specificity Systematics |
| title | Devosia geojensis sp. nov., isolated from diesel-contaminated soil in Korea |
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