Development of specific and rapid detection of bacterial pathogens in dairy products by PCR

A simple and specific method for direct detection of bovine mastitis pathogens (Streptococcus agalactiae (GBS), Staphylococcus aureus and Escherichia coli) in milk products, bacterial samples from milk and isolated bacterial DNA was developed. The method is based on PCR using sequence-specific prime...

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Veröffentlicht in:Folia microbiologica 2006-01, Vol.51 (6), p.639-646
Hauptverfasser: Chotar, M, Vidova, B, Godany, A
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Vidova, B
Godany, A
description A simple and specific method for direct detection of bovine mastitis pathogens (Streptococcus agalactiae (GBS), Staphylococcus aureus and Escherichia coli) in milk products, bacterial samples from milk and isolated bacterial DNA was developed. The method is based on PCR using sequence-specific primers only for GBS and species-specific primers derived from 16S and 23S rRNA for all chosen species. The presence of the gene of surface immunogenic protein (Sip) in bovine GBS isolates was confirmed. The GBS detection was performed with the sequence coding for surface immunogenic protein from GBS human isolates designated as Sip specific sequence (SSS); this sequence was selected for specific primer design. The sequence is unique for GBS and was designed from a consensus of all known sip genes. The specific identification was shown on a collection of 75 GBS bovine isolates from different localities in Slovakia. All isolates were positive to SSS, 16S and 23S rRNA sequence. The 16S and 23S rRNA PCR detection was also performed with S. aureus and E. coli isolates and specific PCR products were also detected. The detection limit of this assay for milk products was 6 CFU/microL for GBS and E. coli, and 16 CFU/microL for S. aureus. This rapid, sensitive and specific diagnostic method can be performed within hours and represents an innovative diagnostic tool for the detection of milk pathogens in dairy products.
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The method is based on PCR using sequence-specific primers only for GBS and species-specific primers derived from 16S and 23S rRNA for all chosen species. The presence of the gene of surface immunogenic protein (Sip) in bovine GBS isolates was confirmed. The GBS detection was performed with the sequence coding for surface immunogenic protein from GBS human isolates designated as Sip specific sequence (SSS); this sequence was selected for specific primer design. The sequence is unique for GBS and was designed from a consensus of all known sip genes. The specific identification was shown on a collection of 75 GBS bovine isolates from different localities in Slovakia. All isolates were positive to SSS, 16S and 23S rRNA sequence. The 16S and 23S rRNA PCR detection was also performed with S. aureus and E. coli isolates and specific PCR products were also detected. The detection limit of this assay for milk products was 6 CFU/microL for GBS and E. coli, and 16 CFU/microL for S. aureus. This rapid, sensitive and specific diagnostic method can be performed within hours and represents an innovative diagnostic tool for the detection of milk pathogens in dairy products.</description><identifier>ISSN: 0015-5632</identifier><identifier>EISSN: 1874-9356</identifier><identifier>DOI: 10.1007/BF02931632</identifier><identifier>PMID: 17455804</identifier><language>eng</language><publisher>United States: Springer Nature B.V</publisher><subject>ADN ; AGENT PATHOGENE ; AISLAMIENTO ; Antigens, Bacterial - genetics ; Bacteria ; Bacteriological Techniques ; Base Sequence ; Colony-forming cells ; Conserved sequence ; COW MILK ; Dairy products ; Dairy Products - microbiology ; DNA ; DNA Primers ; DNA, Bacterial - analysis ; DNA, Bacterial - genetics ; DNA, Ribosomal - analysis ; DNA, Ribosomal - genetics ; Electrophoresis, Agar Gel ; ESCHERICHIA COLI ; Escherichia coli - genetics ; Escherichia coli - isolation &amp; purification ; Food Microbiology ; GENE ; GENES ; Geographical variations ; http://www.fao.org/aos/agrovoc#c_16080 ; http://www.fao.org/aos/agrovoc#c_16429 ; http://www.fao.org/aos/agrovoc#c_2347 ; http://www.fao.org/aos/agrovoc#c_26700 ; http://www.fao.org/aos/agrovoc#c_27583 ; http://www.fao.org/aos/agrovoc#c_3214 ; http://www.fao.org/aos/agrovoc#c_33700 ; http://www.fao.org/aos/agrovoc#c_34079 ; http://www.fao.org/aos/agrovoc#c_37744 ; http://www.fao.org/aos/agrovoc#c_4788 ; http://www.fao.org/aos/agrovoc#c_4830 ; http://www.fao.org/aos/agrovoc#c_5630 ; Immunogenicity ; ISOLATION ; ISOLEMENT ; LAIT DE VACHE ; LECHE DE VACA ; Mastitis ; METHODE ; METHODS ; METODOS ; Microbiology ; Milk ; MILK PRODUCTS ; Molecular Sequence Data ; NUCLEOTIDE SEQUENCE ; ORGANISMOS PATOGENOS ; PATHOGENS ; PCR ; Polymerase chain reaction ; Polymerase Chain Reaction - methods ; Primers ; PRODUCTOS LACTEOS ; PRODUIT LAITIER ; RNA, Ribosomal, 16S - genetics ; RNA, Ribosomal, 23S - genetics ; rRNA 16S ; rRNA 23S ; SECUENCIA NUCLEOTIDICA ; Sensitivity and Specificity ; SEQUENCE NUCLEOTIDIQUE ; STAPHYLOCOCCUS AUREAS ; STAPHYLOCOCCUS AUREUS ; Staphylococcus aureus - genetics ; Staphylococcus aureus - isolation &amp; purification ; STREPTOCOCCUS AGALACTIAE ; Streptococcus agalactiae - genetics ; Streptococcus agalactiae - isolation &amp; purification</subject><ispartof>Folia microbiologica, 2006-01, Vol.51 (6), p.639-646</ispartof><rights>Institute of Microbiology, Academy of Sciences of the Czech Republic 2006</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c398t-49031df66e372686c4958e6591aeff3e703f00d5ecc71f9c7babb0137f547e73</citedby><cites>FETCH-LOGICAL-c398t-49031df66e372686c4958e6591aeff3e703f00d5ecc71f9c7babb0137f547e73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17455804$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chotar, M</creatorcontrib><creatorcontrib>Vidova, B</creatorcontrib><creatorcontrib>Godany, A</creatorcontrib><title>Development of specific and rapid detection of bacterial pathogens in dairy products by PCR</title><title>Folia microbiologica</title><addtitle>Folia Microbiol (Praha)</addtitle><description>A simple and specific method for direct detection of bovine mastitis pathogens (Streptococcus agalactiae (GBS), Staphylococcus aureus and Escherichia coli) in milk products, bacterial samples from milk and isolated bacterial DNA was developed. The method is based on PCR using sequence-specific primers only for GBS and species-specific primers derived from 16S and 23S rRNA for all chosen species. The presence of the gene of surface immunogenic protein (Sip) in bovine GBS isolates was confirmed. The GBS detection was performed with the sequence coding for surface immunogenic protein from GBS human isolates designated as Sip specific sequence (SSS); this sequence was selected for specific primer design. The sequence is unique for GBS and was designed from a consensus of all known sip genes. The specific identification was shown on a collection of 75 GBS bovine isolates from different localities in Slovakia. All isolates were positive to SSS, 16S and 23S rRNA sequence. The 16S and 23S rRNA PCR detection was also performed with S. aureus and E. coli isolates and specific PCR products were also detected. The detection limit of this assay for milk products was 6 CFU/microL for GBS and E. coli, and 16 CFU/microL for S. aureus. 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purification</subject><subject>STREPTOCOCCUS AGALACTIAE</subject><subject>Streptococcus agalactiae - genetics</subject><subject>Streptococcus agalactiae - isolation &amp; purification</subject><issn>0015-5632</issn><issn>1874-9356</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU2LFDEQhoMo7uzqxbsSPIgIrZXOV-eos64KC4rsSQ8hna6sWXo6bdItzL83wwwsePBUUPXwFFUvIc8YvGUA-t2HK2gNZ4q3D8iGdVo0hkv1kGwAmGxk7Z-R81LuABQI3j4mZ0wLKTsQG_LzEv_gmOYdTgtNgZYZfQzRUzcNNLs5DnTABf0S03SY984vmKMb6eyWX-kWp0LjRAcX857OOQ2rXwrt9_Tb9vsT8ii4seDTU70gN1cfb7afm-uvn75s3183nptuaYQBzoagFHLdqk55YWSHShrmMASOGngAGCR6r1kwXveu74FxHaTQqPkFeXXU1vW_VyyL3cXicRzdhGktllWd0ZpX8PX_Qc6kYtByVdGX_6B3ac1TvcJqKYyovzv43hwhn1MpGYOdc9y5vLcM7CEZe59MhV-cjGu_w-EePUVRgedHILhk3W2OxW5_tNUCNUbT8b8l0Y9_</recordid><startdate>20060101</startdate><enddate>20060101</enddate><creator>Chotar, M</creator><creator>Vidova, B</creator><creator>Godany, A</creator><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope></search><sort><creationdate>20060101</creationdate><title>Development of specific and rapid detection of bacterial pathogens in dairy products by PCR</title><author>Chotar, M ; 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identifier ISSN: 0015-5632
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issn 0015-5632
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language eng
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source MEDLINE; SpringerNature Journals
subjects ADN
AGENT PATHOGENE
AISLAMIENTO
Antigens, Bacterial - genetics
Bacteria
Bacteriological Techniques
Base Sequence
Colony-forming cells
Conserved sequence
COW MILK
Dairy products
Dairy Products - microbiology
DNA
DNA Primers
DNA, Bacterial - analysis
DNA, Bacterial - genetics
DNA, Ribosomal - analysis
DNA, Ribosomal - genetics
Electrophoresis, Agar Gel
ESCHERICHIA COLI
Escherichia coli - genetics
Escherichia coli - isolation & purification
Food Microbiology
GENE
GENES
Geographical variations
http://www.fao.org/aos/agrovoc#c_16080
http://www.fao.org/aos/agrovoc#c_16429
http://www.fao.org/aos/agrovoc#c_2347
http://www.fao.org/aos/agrovoc#c_26700
http://www.fao.org/aos/agrovoc#c_27583
http://www.fao.org/aos/agrovoc#c_3214
http://www.fao.org/aos/agrovoc#c_33700
http://www.fao.org/aos/agrovoc#c_34079
http://www.fao.org/aos/agrovoc#c_37744
http://www.fao.org/aos/agrovoc#c_4788
http://www.fao.org/aos/agrovoc#c_4830
http://www.fao.org/aos/agrovoc#c_5630
Immunogenicity
ISOLATION
ISOLEMENT
LAIT DE VACHE
LECHE DE VACA
Mastitis
METHODE
METHODS
METODOS
Microbiology
Milk
MILK PRODUCTS
Molecular Sequence Data
NUCLEOTIDE SEQUENCE
ORGANISMOS PATOGENOS
PATHOGENS
PCR
Polymerase chain reaction
Polymerase Chain Reaction - methods
Primers
PRODUCTOS LACTEOS
PRODUIT LAITIER
RNA, Ribosomal, 16S - genetics
RNA, Ribosomal, 23S - genetics
rRNA 16S
rRNA 23S
SECUENCIA NUCLEOTIDICA
Sensitivity and Specificity
SEQUENCE NUCLEOTIDIQUE
STAPHYLOCOCCUS AUREAS
STAPHYLOCOCCUS AUREUS
Staphylococcus aureus - genetics
Staphylococcus aureus - isolation & purification
STREPTOCOCCUS AGALACTIAE
Streptococcus agalactiae - genetics
Streptococcus agalactiae - isolation & purification
title Development of specific and rapid detection of bacterial pathogens in dairy products by PCR
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