Modeling and optimization IV: Investigation of reaction kinetics and kinetic constants using a program in which artificial neural network (ANN) was integrated

This work describes an application of artificial neural networks (ANNs) to determine kinetics of enzymatic reactions and to estimate kinetic constants. A model enzymatic reaction, the hydrolysis of maltose catalyzed by amyloglucosidase, was performed in a batch reactor and time courses were obtained...

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Veröffentlicht in:Journal of food engineering 2007-04, Vol.79 (4), p.1152-1158
Hauptverfasser: Baş, Deniz, Dudak, Fahriye Ceyda, Boyacı, İsmail Hakkı
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Boyacı, İsmail Hakkı
description This work describes an application of artificial neural networks (ANNs) to determine kinetics of enzymatic reactions and to estimate kinetic constants. A model enzymatic reaction, the hydrolysis of maltose catalyzed by amyloglucosidase, was performed in a batch reactor and time courses were obtained. The artificial neural network was trained with the data of seven time courses and the other eight time courses were used for testing the network. The trained network was integrated in a script coded in MATLAB ®, which is used for the selection of the proper kinetic model and its constants. The kinetics of the reaction was also investigated using the conventional method and the results were compared. The results of both methods imply that the uncompetitive inhibition kinetics was valid for the amyloglucosidase reaction and the kinetic constants ( V max, K m and K i ) were 1.48 μmol maltose/min/mg enzyme, 1.91 mM, and 71.42 mM for the model equation from developed program and 1.38 μmol maltose/min/mg enzyme, 1.96 mM, and 94.34 mM for the model equation obtained from the conventional method. The usability of the model equation in a real engineering problem was also tested by a numerical solution of a differential equation obtained from the batch reactor. The time courses obtained from the developed program and conventional method were compared with the experimentally obtained time courses. The results indicate that the time courses obtained from the developed program fit more properly to the experimental data than that from conventional method.
doi_str_mv 10.1016/j.jfoodeng.2006.04.004
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A model enzymatic reaction, the hydrolysis of maltose catalyzed by amyloglucosidase, was performed in a batch reactor and time courses were obtained. The artificial neural network was trained with the data of seven time courses and the other eight time courses were used for testing the network. The trained network was integrated in a script coded in MATLAB ®, which is used for the selection of the proper kinetic model and its constants. The kinetics of the reaction was also investigated using the conventional method and the results were compared. The results of both methods imply that the uncompetitive inhibition kinetics was valid for the amyloglucosidase reaction and the kinetic constants ( V max, K m and K i ) were 1.48 μmol maltose/min/mg enzyme, 1.91 mM, and 71.42 mM for the model equation from developed program and 1.38 μmol maltose/min/mg enzyme, 1.96 mM, and 94.34 mM for the model equation obtained from the conventional method. The usability of the model equation in a real engineering problem was also tested by a numerical solution of a differential equation obtained from the batch reactor. The time courses obtained from the developed program and conventional method were compared with the experimentally obtained time courses. The results indicate that the time courses obtained from the developed program fit more properly to the experimental data than that from conventional method.</description><identifier>ISSN: 0260-8774</identifier><identifier>EISSN: 1873-5770</identifier><identifier>DOI: 10.1016/j.jfoodeng.2006.04.004</identifier><identifier>CODEN: JFOEDH</identifier><language>eng</language><publisher>Oxford: Elsevier Ltd</publisher><subject>Amyloglucosidase ; Artificial neural networks ; Biological and medical sciences ; enzymatic hydrolysis ; Enzymatic reaction rate ; enzymatic reactions ; enzyme inhibition ; equations ; Food engineering ; Food industries ; Fundamental and applied biological sciences. 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A model enzymatic reaction, the hydrolysis of maltose catalyzed by amyloglucosidase, was performed in a batch reactor and time courses were obtained. The artificial neural network was trained with the data of seven time courses and the other eight time courses were used for testing the network. The trained network was integrated in a script coded in MATLAB ®, which is used for the selection of the proper kinetic model and its constants. The kinetics of the reaction was also investigated using the conventional method and the results were compared. The results of both methods imply that the uncompetitive inhibition kinetics was valid for the amyloglucosidase reaction and the kinetic constants ( V max, K m and K i ) were 1.48 μmol maltose/min/mg enzyme, 1.91 mM, and 71.42 mM for the model equation from developed program and 1.38 μmol maltose/min/mg enzyme, 1.96 mM, and 94.34 mM for the model equation obtained from the conventional method. The usability of the model equation in a real engineering problem was also tested by a numerical solution of a differential equation obtained from the batch reactor. The time courses obtained from the developed program and conventional method were compared with the experimentally obtained time courses. The results indicate that the time courses obtained from the developed program fit more properly to the experimental data than that from conventional method.</description><subject>Amyloglucosidase</subject><subject>Artificial neural networks</subject><subject>Biological and medical sciences</subject><subject>enzymatic hydrolysis</subject><subject>Enzymatic reaction rate</subject><subject>enzymatic reactions</subject><subject>enzyme inhibition</subject><subject>equations</subject><subject>Food engineering</subject><subject>Food industries</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General aspects</subject><subject>glucan 1,4-alpha-glucosidase</subject><subject>Kinetic constants</subject><subject>maltose</subject><subject>mathematical models</subject><subject>model food systems</subject><subject>model validation</subject><subject>neural networks</subject><subject>Reaction kinetics</subject><subject>simulation models</subject><subject>time series analysis</subject><issn>0260-8774</issn><issn>1873-5770</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><recordid>eNqFkcFu1DAQhiMEEkvhFcAXEBwSxonjOJyoKgorlXKAcrVcZ5x6m7W3trer8jA8K97NIo6cxra-bzz2XxQvKVQUKH-_qlbG-wHdWNUAvAJWAbBHxYKKrinbroPHxQJqDqXoOva0eBbjCgBaqOtF8ftrNifrRqLcQPwm2bX9pZL1jix_fiBLd48x2XE-8YYEVPqwvrUOk9Xx4B03RHsXk3Ipkm089CSb4Meg1sQ6srux-oaokKyx2qqJONyGQ0k7H27J29PLy3dkp2KGE2Yr4fC8eGLUFPHFsZ4UV-effpx9KS--fV6enV6Uuum7VA6iBY2G9UrrVhgqGO9EQ1HUgteUK133ivcNDNi2pubXoBkbNBja1HANApuT4s3cN897t81PlmsbNU6Tcui3UdKedcCbNoN8BnXwMQY0chPsWoUHSUHu45Ar-TcOuY9DApM5jiy-Pt6golaTCcppG__ZgkEOZM-9mjmjvFRjyMzV9xpoA5RSzume-DgTmD_k3mKQUVt0GgcbUCc5ePu_Yf4Avriv3g</recordid><startdate>20070401</startdate><enddate>20070401</enddate><creator>Baş, Deniz</creator><creator>Dudak, Fahriye Ceyda</creator><creator>Boyacı, İsmail Hakkı</creator><general>Elsevier Ltd</general><general>Elsevier</general><scope>FBQ</scope><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope></search><sort><creationdate>20070401</creationdate><title>Modeling and optimization IV: Investigation of reaction kinetics and kinetic constants using a program in which artificial neural network (ANN) was integrated</title><author>Baş, Deniz ; Dudak, Fahriye Ceyda ; Boyacı, İsmail Hakkı</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c397t-d850cef49acc58f18467831e8286216ac29a6930de55f26b0c44dc0f1320b08e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Amyloglucosidase</topic><topic>Artificial neural networks</topic><topic>Biological and medical sciences</topic><topic>enzymatic hydrolysis</topic><topic>Enzymatic reaction rate</topic><topic>enzymatic reactions</topic><topic>enzyme inhibition</topic><topic>equations</topic><topic>Food engineering</topic><topic>Food industries</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General aspects</topic><topic>glucan 1,4-alpha-glucosidase</topic><topic>Kinetic constants</topic><topic>maltose</topic><topic>mathematical models</topic><topic>model food systems</topic><topic>model validation</topic><topic>neural networks</topic><topic>Reaction kinetics</topic><topic>simulation models</topic><topic>time series analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Baş, Deniz</creatorcontrib><creatorcontrib>Dudak, Fahriye Ceyda</creatorcontrib><creatorcontrib>Boyacı, İsmail Hakkı</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Journal of food engineering</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Baş, Deniz</au><au>Dudak, Fahriye Ceyda</au><au>Boyacı, İsmail Hakkı</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Modeling and optimization IV: Investigation of reaction kinetics and kinetic constants using a program in which artificial neural network (ANN) was integrated</atitle><jtitle>Journal of food engineering</jtitle><date>2007-04-01</date><risdate>2007</risdate><volume>79</volume><issue>4</issue><spage>1152</spage><epage>1158</epage><pages>1152-1158</pages><issn>0260-8774</issn><eissn>1873-5770</eissn><coden>JFOEDH</coden><abstract>This work describes an application of artificial neural networks (ANNs) to determine kinetics of enzymatic reactions and to estimate kinetic constants. A model enzymatic reaction, the hydrolysis of maltose catalyzed by amyloglucosidase, was performed in a batch reactor and time courses were obtained. The artificial neural network was trained with the data of seven time courses and the other eight time courses were used for testing the network. The trained network was integrated in a script coded in MATLAB ®, which is used for the selection of the proper kinetic model and its constants. The kinetics of the reaction was also investigated using the conventional method and the results were compared. The results of both methods imply that the uncompetitive inhibition kinetics was valid for the amyloglucosidase reaction and the kinetic constants ( V max, K m and K i ) were 1.48 μmol maltose/min/mg enzyme, 1.91 mM, and 71.42 mM for the model equation from developed program and 1.38 μmol maltose/min/mg enzyme, 1.96 mM, and 94.34 mM for the model equation obtained from the conventional method. The usability of the model equation in a real engineering problem was also tested by a numerical solution of a differential equation obtained from the batch reactor. The time courses obtained from the developed program and conventional method were compared with the experimentally obtained time courses. The results indicate that the time courses obtained from the developed program fit more properly to the experimental data than that from conventional method.</abstract><cop>Oxford</cop><pub>Elsevier Ltd</pub><doi>10.1016/j.jfoodeng.2006.04.004</doi><tpages>7</tpages></addata></record>
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subjects Amyloglucosidase
Artificial neural networks
Biological and medical sciences
enzymatic hydrolysis
Enzymatic reaction rate
enzymatic reactions
enzyme inhibition
equations
Food engineering
Food industries
Fundamental and applied biological sciences. Psychology
General aspects
glucan 1,4-alpha-glucosidase
Kinetic constants
maltose
mathematical models
model food systems
model validation
neural networks
Reaction kinetics
simulation models
time series analysis
title Modeling and optimization IV: Investigation of reaction kinetics and kinetic constants using a program in which artificial neural network (ANN) was integrated
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