Critical size dependence of domain formation observed in coarse-grained simulations of bilayers composed of ternary lipid mixtures
Model cellular membranes are known to form micro- and macroscale lipid domains dependent on molecular composition. The formation of macroscopic lipid domains by lipid mixtures has been the subject of many simulation investigations. We present a critical study of system size impact on lipid domain ph...
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Veröffentlicht in: | The Journal of chemical physics 2017-09, Vol.147 (9), p.095101-095101 |
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creator | Pantelopulos, George A. Nagai, Tetsuro Bandara, Asanga Panahi, Afra Straub, John E. |
description | Model cellular membranes are known to form micro- and macroscale lipid domains dependent on molecular composition. The formation of macroscopic lipid domains by lipid mixtures has been the subject of many simulation investigations. We present a critical study of system size impact on lipid domain phase separation into liquid-ordered and liquid-disordered macroscale domains in ternary lipid mixtures. In the popular di-C16:0 PC:di-C18:2 PC:cholesterol at 35:35:30 ratio mixture, we find systems with a minimum of 1480 lipids to be necessary for the formation of macroscopic phase separated domains and systems of 10 000 lipids to achieve structurally converged conformations similar to the thermodynamic limit. To understand these results and predict the behavior of any mixture forming two phases, we develop and investigate an analytical Flory-Huggins model which is recursively validated using simulation and experimental data. We find that micro- and macroscale domains can coexist in ternary mixtures. Additionally, we analyze the distributions of specific lipid-lipid interactions in each phase, characterizing domain structures proposed based on past experimental studies. These findings offer guidance in selecting appropriate system sizes for the study of phase separations and provide new insights into the nature of domain structure for a popular ternary lipid mixture. |
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The formation of macroscopic lipid domains by lipid mixtures has been the subject of many simulation investigations. We present a critical study of system size impact on lipid domain phase separation into liquid-ordered and liquid-disordered macroscale domains in ternary lipid mixtures. In the popular di-C16:0 PC:di-C18:2 PC:cholesterol at 35:35:30 ratio mixture, we find systems with a minimum of 1480 lipids to be necessary for the formation of macroscopic phase separated domains and systems of 10 000 lipids to achieve structurally converged conformations similar to the thermodynamic limit. To understand these results and predict the behavior of any mixture forming two phases, we develop and investigate an analytical Flory-Huggins model which is recursively validated using simulation and experimental data. We find that micro- and macroscale domains can coexist in ternary mixtures. Additionally, we analyze the distributions of specific lipid-lipid interactions in each phase, characterizing domain structures proposed based on past experimental studies. 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Additionally, we analyze the distributions of specific lipid-lipid interactions in each phase, characterizing domain structures proposed based on past experimental studies. These findings offer guidance in selecting appropriate system sizes for the study of phase separations and provide new insights into the nature of domain structure for a popular ternary lipid mixture.</description><subject>1,2-Dipalmitoylphosphatidylcholine - chemistry</subject><subject>Cell membranes</subject><subject>Cholesterol</subject><subject>Cholesterol - chemistry</subject><subject>Computer simulation</subject><subject>Dependence</subject><subject>Domains</subject><subject>Lipid Bilayers - chemistry</subject><subject>Lipids</subject><subject>Lipids - chemistry</subject><subject>Models, Chemical</subject><subject>Molecular Dynamics Simulation</subject><subject>Phase separation</subject><subject>Physics</subject><subject>Structure-Activity Relationship</subject><subject>Thermodynamics</subject><issn>0021-9606</issn><issn>1089-7690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1rFTEUxYNY7LO68B-QgJsqTE1m8rkpyKN-QMGNrkMmuVNTMpMxmSm2y_7lpn3Poi66unDuL4eTexB6RckJJaJ7T0-Y1loS_QRtKFG6kUKTp2hDSEsbLYg4RM9LuSSEUNmyZ-iwVUoJwdQG3W5zWIKzEZdwA9jDDJOHyQFOA_ZptGHCQ8qjXUKacOoL5CvwuKou2VygucgVqUoJ4xrvqXL3tA_RXkMuFRvnVCpQxQXyZPM1jmEOHo_h17JmKC_QwWBjgZf7eYS-fzz7tv3cnH_99GX74bxxnLClkYwoS72gvOfDoB2TjHPLJFDLFbS055r30OuBtJpIRbxkg5Jac971reC-O0KnO9957UfwDqYl22jmHMYayiQbzL-bKfwwF-nK8HopLnQ1ON4b5PRzhbKYMRQHMdoJ0loM1Z3k9bSaV_TNf-hlWuvnYzEtpbWRTreyUm93lMuplAzDQxhKzF2zhpp9s5V9_Xf6B_JPlRV4twOKC8t9EY-4_QY4j63e</recordid><startdate>20170907</startdate><enddate>20170907</enddate><creator>Pantelopulos, George A.</creator><creator>Nagai, Tetsuro</creator><creator>Bandara, Asanga</creator><creator>Panahi, Afra</creator><creator>Straub, John E.</creator><general>American Institute of Physics</general><general>AIP Publishing LLC</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>H8D</scope><scope>L7M</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4373-1677</orcidid><orcidid>https://orcid.org/0000-0002-2355-3316</orcidid><orcidid>https://orcid.org/0000000243731677</orcidid><orcidid>https://orcid.org/0000000223553316</orcidid></search><sort><creationdate>20170907</creationdate><title>Critical size dependence of domain formation observed in coarse-grained simulations of bilayers composed of ternary lipid mixtures</title><author>Pantelopulos, George A. ; 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subjects | 1,2-Dipalmitoylphosphatidylcholine - chemistry Cell membranes Cholesterol Cholesterol - chemistry Computer simulation Dependence Domains Lipid Bilayers - chemistry Lipids Lipids - chemistry Models, Chemical Molecular Dynamics Simulation Phase separation Physics Structure-Activity Relationship Thermodynamics |
title | Critical size dependence of domain formation observed in coarse-grained simulations of bilayers composed of ternary lipid mixtures |
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