Phylogenetic analysis of Puumala virus strains from Central Europe highlights the need for a full-genome perspective on hantavirus evolution

Puumala virus (PUUV), carried by bank voles ( Myodes glareolus ), is the medically most important hantavirus in Central and Western Europe. In this study, a total of 523 bank voles (408 from Germany, 72 from Slovakia, and 43 from Czech Republic) collected between the years 2007–2012 were analyzed fo...

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Veröffentlicht in:Virus genes 2017-12, Vol.53 (6), p.913-917
Hauptverfasser: Szabó, Róbert, Radosa, Lukáš, Ličková, Martina, Sláviková, Monika, Heroldová, Marta, Stanko, Michal, Pejčoch, Milan, Osterberg, Anja, Laenen, Lies, Schex, Susanne, Ulrich, Rainer G., Essbauer, Sandra, Maes, Piet, Klempa, Boris
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container_issue 6
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container_title Virus genes
container_volume 53
creator Szabó, Róbert
Radosa, Lukáš
Ličková, Martina
Sláviková, Monika
Heroldová, Marta
Stanko, Michal
Pejčoch, Milan
Osterberg, Anja
Laenen, Lies
Schex, Susanne
Ulrich, Rainer G.
Essbauer, Sandra
Maes, Piet
Klempa, Boris
description Puumala virus (PUUV), carried by bank voles ( Myodes glareolus ), is the medically most important hantavirus in Central and Western Europe. In this study, a total of 523 bank voles (408 from Germany, 72 from Slovakia, and 43 from Czech Republic) collected between the years 2007–2012 were analyzed for the presence of hantavirus RNA. Partial PUUV genome segment sequences were obtained from 51 voles. Phylogenetic analyses of all three genome segments showed that the newfound strains cluster with other Central and Western European PUUV strains. The new sequences from Šumava (Bohemian Forest), Czech Republic, are most closely related to the strains from the neighboring Bavarian Forest, a known hantavirus disease outbreak region. Interestingly, the Slovak strains clustered with the sequences from Bohemian and Bavarian Forests only in the M but not S segment analyses. This well-supported topological incongruence suggests a segment reassortment event or, as we analyzed only partial sequences, homologous recombination. Our data highlight the necessity of sequencing all three hantavirus genome segments and of a broader bank vole screening not only in recognized endemic foci but also in regions with no reported human hantavirus disease cases.
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subjects Animals
Arvicolinae - virology
Biomedical and Life Sciences
Biomedicine
Czech Republic
Europe
Evolution, Molecular
Genomes
Genotype
Germany
Hantavirus
Hantavirus - genetics
Hantavirus Infections - virology
Homologous recombination
Humans
Medical Microbiology
Outbreaks
Phylogenetics
Phylogeny
Plant Sciences
Puumala virus - genetics
Ribonucleic acid
RNA
RNA, Viral - genetics
Rodents
Slovakia
Strains (organisms)
Virology
title Phylogenetic analysis of Puumala virus strains from Central Europe highlights the need for a full-genome perspective on hantavirus evolution
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