Whole-exome sequencing identified compound heterozygous variants in MMKS in a Chinese pedigree with Bardet-Biedl syndrome
Bardet-Biedl syndrome(BBS) is a genetically heterogeneous disorder characterized by retinal dystrophy, polydactyly, obesity,developmental delay, and renal defects. At least 21 candidate BBS-associated genes(BBS1-19, NPHP1, and IFT172) have previously been identified, and all of them play important r...
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description | Bardet-Biedl syndrome(BBS) is a genetically heterogeneous disorder characterized by retinal dystrophy, polydactyly, obesity,developmental delay, and renal defects. At least 21 candidate BBS-associated genes(BBS1-19, NPHP1, and IFT172) have previously been identified, and all of them play important roles in ciliary function. Here, we collected a BBS pedigree with four members and performed whole-exome sequencing on the proband. The variants were analyzed and evaluated to confirm their pathogenicity. We found compound heterozygous variants(c.1192C〉T, p.Q398* and c.1175C〉T, p.T392M) in MKKS in both the siblings, and these were likely to be pathogenic variants. We also found a missense variant(c.2029G〉C, p.E677Q) in NPHP1 and a missense variant(c.2470C〉T, p.R824C) in BBS9 in the proband only, which are variants of uncertain significance. The compound heterozygous variants were probably responsible for the BBS phenotype in this Chinese pedigree and the missense mutations in NPHP1 and BBS9 might contribute to the mutation load. |
doi_str_mv | 10.1007/s11427-017-9085-7 |
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At least 21 candidate BBS-associated genes(BBS1-19, NPHP1, and IFT172) have previously been identified, and all of them play important roles in ciliary function. Here, we collected a BBS pedigree with four members and performed whole-exome sequencing on the proband. The variants were analyzed and evaluated to confirm their pathogenicity. We found compound heterozygous variants(c.1192C〉T, p.Q398* and c.1175C〉T, p.T392M) in MKKS in both the siblings, and these were likely to be pathogenic variants. We also found a missense variant(c.2029G〉C, p.E677Q) in NPHP1 and a missense variant(c.2470C〉T, p.R824C) in BBS9 in the proband only, which are variants of uncertain significance. The compound heterozygous variants were probably responsible for the BBS phenotype in this Chinese pedigree and the missense mutations in NPHP1 and BBS9 might contribute to the mutation load.</description><identifier>ISSN: 1674-7305</identifier><identifier>EISSN: 1869-1889</identifier><identifier>DOI: 10.1007/s11427-017-9085-7</identifier><identifier>PMID: 28624958</identifier><language>eng</language><publisher>Beijing: Science China Press</publisher><subject>Adaptor Proteins, Signal Transducing - genetics ; Bardet-Biedl syndrome ; Bardet-Biedl Syndrome - genetics ; BBS ; Biomedical and Life Sciences ; Child ; Exome ; Female ; Group II Chaperonins - genetics ; Heterozygote ; High-Throughput Nucleotide Sequencing ; Humans ; Kidneys ; Life Sciences ; Membrane Proteins - genetics ; Missense mutation ; MKKS protein ; Mutation ; Neoplasm Proteins - genetics ; Pathogenicity ; Pedigree ; Polydactyly ; Polymorphism, Single Nucleotide ; Research Paper ; Retina ; Retinal degeneration ; Siblings ; 全基因组测序 ; 复合 ; 家系 ; 突变 ; 综合征 ; 营养不良 ; 遗传异质性</subject><ispartof>Science China. Life sciences, 2017-07, Vol.60 (7), p.739-745</ispartof><rights>Science China Press and Springer-Verlag GmbH Germany 2017</rights><rights>Science China Life Sciences is a copyright of Springer, 2017.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c399t-ebfb3235e24ca24534a664636a57419dceb7f4244832a8fb8e04c6123c85fd8a3</citedby><cites>FETCH-LOGICAL-c399t-ebfb3235e24ca24534a664636a57419dceb7f4244832a8fb8e04c6123c85fd8a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://image.cqvip.com/vip1000/qk/60112X/60112X.jpg</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11427-017-9085-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11427-017-9085-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28624958$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Qi, Zhan</creatorcontrib><creatorcontrib>Shen, Ying</creatorcontrib><creatorcontrib>Fu, Qian</creatorcontrib><creatorcontrib>Li, Wei</creatorcontrib><creatorcontrib>Yang, Wei</creatorcontrib><creatorcontrib>Xu, Wenshan</creatorcontrib><creatorcontrib>Chu, Ping</creatorcontrib><creatorcontrib>Zhang, Yaxin</creatorcontrib><creatorcontrib>Wang, Hui</creatorcontrib><title>Whole-exome sequencing identified compound heterozygous variants in MMKS in a Chinese pedigree with Bardet-Biedl syndrome</title><title>Science China. Life sciences</title><addtitle>Sci. China Life Sci</addtitle><addtitle>Sci China Life Sci</addtitle><description>Bardet-Biedl syndrome(BBS) is a genetically heterogeneous disorder characterized by retinal dystrophy, polydactyly, obesity,developmental delay, and renal defects. At least 21 candidate BBS-associated genes(BBS1-19, NPHP1, and IFT172) have previously been identified, and all of them play important roles in ciliary function. Here, we collected a BBS pedigree with four members and performed whole-exome sequencing on the proband. The variants were analyzed and evaluated to confirm their pathogenicity. We found compound heterozygous variants(c.1192C〉T, p.Q398* and c.1175C〉T, p.T392M) in MKKS in both the siblings, and these were likely to be pathogenic variants. We also found a missense variant(c.2029G〉C, p.E677Q) in NPHP1 and a missense variant(c.2470C〉T, p.R824C) in BBS9 in the proband only, which are variants of uncertain significance. The compound heterozygous variants were probably responsible for the BBS phenotype in this Chinese pedigree and the missense mutations in NPHP1 and BBS9 might contribute to the mutation load.</description><subject>Adaptor Proteins, Signal Transducing - genetics</subject><subject>Bardet-Biedl syndrome</subject><subject>Bardet-Biedl Syndrome - genetics</subject><subject>BBS</subject><subject>Biomedical and Life Sciences</subject><subject>Child</subject><subject>Exome</subject><subject>Female</subject><subject>Group II Chaperonins - genetics</subject><subject>Heterozygote</subject><subject>High-Throughput Nucleotide Sequencing</subject><subject>Humans</subject><subject>Kidneys</subject><subject>Life Sciences</subject><subject>Membrane Proteins - genetics</subject><subject>Missense mutation</subject><subject>MKKS protein</subject><subject>Mutation</subject><subject>Neoplasm Proteins - genetics</subject><subject>Pathogenicity</subject><subject>Pedigree</subject><subject>Polydactyly</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Research Paper</subject><subject>Retina</subject><subject>Retinal degeneration</subject><subject>Siblings</subject><subject>全基因组测序</subject><subject>复合</subject><subject>家系</subject><subject>突变</subject><subject>综合征</subject><subject>营养不良</subject><subject>遗传异质性</subject><issn>1674-7305</issn><issn>1869-1889</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kctu1DAUhiMEolXpA7BBFmzYGHyLL0s6ooBoxQIQy8iJTxJXiT21k8L06fFohgqxwJtj6XznP5e_qp5T8oYSot5mSgVTmFCFDdE1Vo-qU6qlwVRr87j8pRJYcVKfVOc535DyOCdMqafVCdOSCVPr02r3Y4wTYPgVZ0AZblcInQ8D8g7C4nsPDnVx3sY1ODTCAine74a4ZnRnk7dhycgHdH39-es-WrQZfYAMaAvODwkA_fTLiC5scrDgi6I2obwLLpVuz6onvZ0ynB_jWfX98v23zUd89eXDp827K9xxYxYMbd9yxmtgorNM1FxYKYXk0tZKUOM6aFUvmBCaM6v7VgMRnaSMd7runbb8rHp90N2mWNbLSzP73ME02QBlkYYaSqkph-MFffUPehPXFMp0e6quSbmfKBQ9UF2KOSfom23ys027hpJmb01zsKYp1jR7axpVal4cldd2BvdQ8ceIArADkEsqDJD-av0f1ZfHScYYhttS9yAsFVOSaKP5b8OdpPE</recordid><startdate>20170701</startdate><enddate>20170701</enddate><creator>Qi, Zhan</creator><creator>Shen, Ying</creator><creator>Fu, Qian</creator><creator>Li, Wei</creator><creator>Yang, Wei</creator><creator>Xu, Wenshan</creator><creator>Chu, Ping</creator><creator>Zhang, Yaxin</creator><creator>Wang, Hui</creator><general>Science China Press</general><general>Springer Nature B.V</general><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>~WA</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7TK</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope></search><sort><creationdate>20170701</creationdate><title>Whole-exome sequencing identified compound heterozygous variants in MMKS in a Chinese pedigree with Bardet-Biedl syndrome</title><author>Qi, Zhan ; 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Life sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Qi, Zhan</au><au>Shen, Ying</au><au>Fu, Qian</au><au>Li, Wei</au><au>Yang, Wei</au><au>Xu, Wenshan</au><au>Chu, Ping</au><au>Zhang, Yaxin</au><au>Wang, Hui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Whole-exome sequencing identified compound heterozygous variants in MMKS in a Chinese pedigree with Bardet-Biedl syndrome</atitle><jtitle>Science China. Life sciences</jtitle><stitle>Sci. China Life Sci</stitle><addtitle>Sci China Life Sci</addtitle><date>2017-07-01</date><risdate>2017</risdate><volume>60</volume><issue>7</issue><spage>739</spage><epage>745</epage><pages>739-745</pages><issn>1674-7305</issn><eissn>1869-1889</eissn><abstract>Bardet-Biedl syndrome(BBS) is a genetically heterogeneous disorder characterized by retinal dystrophy, polydactyly, obesity,developmental delay, and renal defects. At least 21 candidate BBS-associated genes(BBS1-19, NPHP1, and IFT172) have previously been identified, and all of them play important roles in ciliary function. Here, we collected a BBS pedigree with four members and performed whole-exome sequencing on the proband. The variants were analyzed and evaluated to confirm their pathogenicity. We found compound heterozygous variants(c.1192C〉T, p.Q398* and c.1175C〉T, p.T392M) in MKKS in both the siblings, and these were likely to be pathogenic variants. We also found a missense variant(c.2029G〉C, p.E677Q) in NPHP1 and a missense variant(c.2470C〉T, p.R824C) in BBS9 in the proband only, which are variants of uncertain significance. The compound heterozygous variants were probably responsible for the BBS phenotype in this Chinese pedigree and the missense mutations in NPHP1 and BBS9 might contribute to the mutation load.</abstract><cop>Beijing</cop><pub>Science China Press</pub><pmid>28624958</pmid><doi>10.1007/s11427-017-9085-7</doi><tpages>7</tpages></addata></record> |
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subjects | Adaptor Proteins, Signal Transducing - genetics Bardet-Biedl syndrome Bardet-Biedl Syndrome - genetics BBS Biomedical and Life Sciences Child Exome Female Group II Chaperonins - genetics Heterozygote High-Throughput Nucleotide Sequencing Humans Kidneys Life Sciences Membrane Proteins - genetics Missense mutation MKKS protein Mutation Neoplasm Proteins - genetics Pathogenicity Pedigree Polydactyly Polymorphism, Single Nucleotide Research Paper Retina Retinal degeneration Siblings 全基因组测序 复合 家系 突变 综合征 营养不良 遗传异质性 |
title | Whole-exome sequencing identified compound heterozygous variants in MMKS in a Chinese pedigree with Bardet-Biedl syndrome |
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