Occurrence of co-infection with dengue viruses during 2014 in New Delhi, India
Dengue fever is an arthropod-borne viral infection that has become endemic in several parts of India including Delhi. We studied occurrence of co-infection with dengue viruses during an outbreak in New Delhi, India in 2014. For the present study, blood samples collected from symptomatic patients wer...
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Veröffentlicht in: | Epidemiology and infection 2017-01, Vol.145 (1), p.67-77 |
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creator | TAZEEN, A. AFREEN, N. ABDULLAH, M. DEEBA, F. HAIDER, S. H. KAZIM, S. N. ALI, S. NAQVI, I. H. BROOR, S. AHMED, A. PARVEEN, S. |
description | Dengue fever is an arthropod-borne viral infection that has become endemic in several parts of India including Delhi. We studied occurrence of co-infection with dengue viruses during an outbreak in New Delhi, India in 2014. For the present study, blood samples collected from symptomatic patients were analysed by RT–PCR. Eighty percent of the samples were positive for dengue virus. The result showed that DENV-1 (77%) was the predominant serotype followed by DENV-2 (60%). Concurrent infection with more than one serotype was identified in 43% of the positive samples. Phylogenetic analysis clustered DENV-1 strains with the American African and DENV-2 strains in Cosmopolitan genotypes. Four common amino-acid mutations were identified in the envelope gene of DENV-1 sequences (F337I, A369T, V380I and L402F) and one common mutation (N390S) in the DENV-2 sequences. Further analysis revealed purifying selection in both the serotypes. A significant number of patients were co-infected with DENV-1 and DENV-2 serotypes. Although we do not have direct evidence to demonstrate co-evolution of these two stereotypes, nonetheless their simultaneous occurrence does indicate that they are favoured by evolutionary forces. An ongoing surveillance and careful analysis of future outbreaks will strengthen the concept of co-evolution or otherwise. Whether the concurrent dengue viral infection is correlated with disease severity in a given population is another aspect to be pursued. This study is envisaged to be useful for future reference in the context of overall epidemiology. |
doi_str_mv | 10.1017/S0950268816001990 |
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H. ; KAZIM, S. N. ; ALI, S. ; NAQVI, I. H. ; BROOR, S. ; AHMED, A. ; PARVEEN, S.</creator><creatorcontrib>TAZEEN, A. ; AFREEN, N. ; ABDULLAH, M. ; DEEBA, F. ; HAIDER, S. H. ; KAZIM, S. N. ; ALI, S. ; NAQVI, I. H. ; BROOR, S. ; AHMED, A. ; PARVEEN, S.</creatorcontrib><description>Dengue fever is an arthropod-borne viral infection that has become endemic in several parts of India including Delhi. We studied occurrence of co-infection with dengue viruses during an outbreak in New Delhi, India in 2014. For the present study, blood samples collected from symptomatic patients were analysed by RT–PCR. Eighty percent of the samples were positive for dengue virus. The result showed that DENV-1 (77%) was the predominant serotype followed by DENV-2 (60%). Concurrent infection with more than one serotype was identified in 43% of the positive samples. Phylogenetic analysis clustered DENV-1 strains with the American African and DENV-2 strains in Cosmopolitan genotypes. Four common amino-acid mutations were identified in the envelope gene of DENV-1 sequences (F337I, A369T, V380I and L402F) and one common mutation (N390S) in the DENV-2 sequences. Further analysis revealed purifying selection in both the serotypes. A significant number of patients were co-infected with DENV-1 and DENV-2 serotypes. Although we do not have direct evidence to demonstrate co-evolution of these two stereotypes, nonetheless their simultaneous occurrence does indicate that they are favoured by evolutionary forces. An ongoing surveillance and careful analysis of future outbreaks will strengthen the concept of co-evolution or otherwise. Whether the concurrent dengue viral infection is correlated with disease severity in a given population is another aspect to be pursued. This study is envisaged to be useful for future reference in the context of overall epidemiology.</description><identifier>ISSN: 0950-2688</identifier><identifier>EISSN: 1469-4409</identifier><identifier>DOI: 10.1017/S0950268816001990</identifier><identifier>PMID: 27620341</identifier><language>eng</language><publisher>Cambridge, UK: Cambridge University Press</publisher><subject>Adult ; Amino Acid Substitution ; Cluster Analysis ; Coinfection - epidemiology ; Coinfection - virology ; Dengue ; Dengue - epidemiology ; Dengue - virology ; Dengue fever ; Dengue Virus - classification ; Dengue Virus - genetics ; Dengue Virus - isolation & purification ; Disease Outbreaks ; DNA polymerase ; Epidemics ; Female ; Flaviviridae ; Genotype ; Humans ; India - epidemiology ; Infections ; Male ; Mutation, Missense ; Original Papers ; Patients ; Phylogenetics ; Phylogeny ; Polymerase chain reaction ; Proteins ; Serogroup ; Viral Envelope Proteins - genetics ; Viral infections ; Viruses ; Young Adult</subject><ispartof>Epidemiology and infection, 2017-01, Vol.145 (1), p.67-77</ispartof><rights>Copyright © Cambridge University Press 2016</rights><rights>Cambridge University Press 2016</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c471t-1e3d23d743ff2e56c8957ca95f2e6c4e5a239786a97b20f22f37439270b8b8903</citedby><cites>FETCH-LOGICAL-c471t-1e3d23d743ff2e56c8957ca95f2e6c4e5a239786a97b20f22f37439270b8b8903</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26521064$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26521064$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,27901,27902,57992,58225</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27620341$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>TAZEEN, A.</creatorcontrib><creatorcontrib>AFREEN, N.</creatorcontrib><creatorcontrib>ABDULLAH, M.</creatorcontrib><creatorcontrib>DEEBA, F.</creatorcontrib><creatorcontrib>HAIDER, S. H.</creatorcontrib><creatorcontrib>KAZIM, S. N.</creatorcontrib><creatorcontrib>ALI, S.</creatorcontrib><creatorcontrib>NAQVI, I. H.</creatorcontrib><creatorcontrib>BROOR, S.</creatorcontrib><creatorcontrib>AHMED, A.</creatorcontrib><creatorcontrib>PARVEEN, S.</creatorcontrib><title>Occurrence of co-infection with dengue viruses during 2014 in New Delhi, India</title><title>Epidemiology and infection</title><addtitle>Epidemiol. Infect</addtitle><description>Dengue fever is an arthropod-borne viral infection that has become endemic in several parts of India including Delhi. We studied occurrence of co-infection with dengue viruses during an outbreak in New Delhi, India in 2014. For the present study, blood samples collected from symptomatic patients were analysed by RT–PCR. Eighty percent of the samples were positive for dengue virus. The result showed that DENV-1 (77%) was the predominant serotype followed by DENV-2 (60%). Concurrent infection with more than one serotype was identified in 43% of the positive samples. Phylogenetic analysis clustered DENV-1 strains with the American African and DENV-2 strains in Cosmopolitan genotypes. Four common amino-acid mutations were identified in the envelope gene of DENV-1 sequences (F337I, A369T, V380I and L402F) and one common mutation (N390S) in the DENV-2 sequences. Further analysis revealed purifying selection in both the serotypes. A significant number of patients were co-infected with DENV-1 and DENV-2 serotypes. Although we do not have direct evidence to demonstrate co-evolution of these two stereotypes, nonetheless their simultaneous occurrence does indicate that they are favoured by evolutionary forces. An ongoing surveillance and careful analysis of future outbreaks will strengthen the concept of co-evolution or otherwise. Whether the concurrent dengue viral infection is correlated with disease severity in a given population is another aspect to be pursued. This study is envisaged to be useful for future reference in the context of overall epidemiology.</description><subject>Adult</subject><subject>Amino Acid Substitution</subject><subject>Cluster Analysis</subject><subject>Coinfection - epidemiology</subject><subject>Coinfection - virology</subject><subject>Dengue</subject><subject>Dengue - epidemiology</subject><subject>Dengue - virology</subject><subject>Dengue fever</subject><subject>Dengue Virus - classification</subject><subject>Dengue Virus - genetics</subject><subject>Dengue Virus - isolation & purification</subject><subject>Disease Outbreaks</subject><subject>DNA polymerase</subject><subject>Epidemics</subject><subject>Female</subject><subject>Flaviviridae</subject><subject>Genotype</subject><subject>Humans</subject><subject>India - epidemiology</subject><subject>Infections</subject><subject>Male</subject><subject>Mutation, Missense</subject><subject>Original Papers</subject><subject>Patients</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Polymerase chain reaction</subject><subject>Proteins</subject><subject>Serogroup</subject><subject>Viral Envelope Proteins - genetics</subject><subject>Viral infections</subject><subject>Viruses</subject><subject>Young Adult</subject><issn>0950-2688</issn><issn>1469-4409</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp1kEtPHDEQhK0oKCyPH8CByBIXDhloe_w8IhIeEto9kJxHM56exatdD7FnQPn3eLWbgIg4tVr1VXepCDlicMaA6fN7sBK4MoYpAGYtfCITJpQthAD7mUzWcrHWd8leSgsAsNzoL2SXa8WhFGxCpjPnxhgxOKR9R11f-NChG3wf6LMfHmiLYT4iffJxTJhoO0Yf5pQDE9QHOsVn-h2XD_4bvQ2trw_ITlcvEx5u5z75dfXj5-VNcTe7vr28uCuc0GwoGJYtL1styq7jKJUzVmpXW5k35QTKmpdWG1Vb3XDoOO_KzFquoTGNsVDuk9PN3cfY_x4xDdXKJ4fLZR2wH1PFLCghjTRr9OQduujHGHK6ihkhpLS5ykyxDeVin1LErnqMflXHPxWDal129V_Z2fN1e3lsVtj-c_xtNwPHG2CRhj6-6kpylvNlvdw-rVdN9O0c32T78O0LMsiPBg</recordid><startdate>201701</startdate><enddate>201701</enddate><creator>TAZEEN, A.</creator><creator>AFREEN, N.</creator><creator>ABDULLAH, M.</creator><creator>DEEBA, F.</creator><creator>HAIDER, S. 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H.</creatorcontrib><creatorcontrib>BROOR, S.</creatorcontrib><creatorcontrib>AHMED, A.</creatorcontrib><creatorcontrib>PARVEEN, S.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Proquest Nursing & Allied Health Source</collection><collection>Health and Safety Science Abstracts (Full archive)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Public Health Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>British Nursing Database</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Nursing & Allied Health Premium</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Safety Science and Risk</collection><jtitle>Epidemiology and infection</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>TAZEEN, A.</au><au>AFREEN, N.</au><au>ABDULLAH, M.</au><au>DEEBA, F.</au><au>HAIDER, S. H.</au><au>KAZIM, S. N.</au><au>ALI, S.</au><au>NAQVI, I. H.</au><au>BROOR, S.</au><au>AHMED, A.</au><au>PARVEEN, S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Occurrence of co-infection with dengue viruses during 2014 in New Delhi, India</atitle><jtitle>Epidemiology and infection</jtitle><addtitle>Epidemiol. Infect</addtitle><date>2017-01</date><risdate>2017</risdate><volume>145</volume><issue>1</issue><spage>67</spage><epage>77</epage><pages>67-77</pages><issn>0950-2688</issn><eissn>1469-4409</eissn><abstract>Dengue fever is an arthropod-borne viral infection that has become endemic in several parts of India including Delhi. We studied occurrence of co-infection with dengue viruses during an outbreak in New Delhi, India in 2014. For the present study, blood samples collected from symptomatic patients were analysed by RT–PCR. Eighty percent of the samples were positive for dengue virus. The result showed that DENV-1 (77%) was the predominant serotype followed by DENV-2 (60%). Concurrent infection with more than one serotype was identified in 43% of the positive samples. Phylogenetic analysis clustered DENV-1 strains with the American African and DENV-2 strains in Cosmopolitan genotypes. Four common amino-acid mutations were identified in the envelope gene of DENV-1 sequences (F337I, A369T, V380I and L402F) and one common mutation (N390S) in the DENV-2 sequences. Further analysis revealed purifying selection in both the serotypes. A significant number of patients were co-infected with DENV-1 and DENV-2 serotypes. Although we do not have direct evidence to demonstrate co-evolution of these two stereotypes, nonetheless their simultaneous occurrence does indicate that they are favoured by evolutionary forces. An ongoing surveillance and careful analysis of future outbreaks will strengthen the concept of co-evolution or otherwise. Whether the concurrent dengue viral infection is correlated with disease severity in a given population is another aspect to be pursued. This study is envisaged to be useful for future reference in the context of overall epidemiology.</abstract><cop>Cambridge, UK</cop><pub>Cambridge University Press</pub><pmid>27620341</pmid><doi>10.1017/S0950268816001990</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adult Amino Acid Substitution Cluster Analysis Coinfection - epidemiology Coinfection - virology Dengue Dengue - epidemiology Dengue - virology Dengue fever Dengue Virus - classification Dengue Virus - genetics Dengue Virus - isolation & purification Disease Outbreaks DNA polymerase Epidemics Female Flaviviridae Genotype Humans India - epidemiology Infections Male Mutation, Missense Original Papers Patients Phylogenetics Phylogeny Polymerase chain reaction Proteins Serogroup Viral Envelope Proteins - genetics Viral infections Viruses Young Adult |
title | Occurrence of co-infection with dengue viruses during 2014 in New Delhi, India |
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