A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation
[Display omitted] •It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic conte...
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Veröffentlicht in: | Molecular phylogenetics and evolution 2017-09, Vol.114, p.295-333 |
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creator | Zhang, Liang Zhou, Xin-Mao Chen, De-Kui Schuettpelz, Eric Knapp, Ralf Lu, Ngan Thi Luong, Thien Tam Dang, Minh Tri Duan, Yi-Fan He, Hai Gao, Xin-Fen Zhang, Li-Bing |
description | [Display omitted]
•It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic context;•Repeated evolution of free venation from anastomosing venation was found in Tectaria.
Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria, ca. 36 species of six non-Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda, Microbrochis, Phlebiogonium, and Sagenia, sampled here for the first time, are resolved as part of Tectaria; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence. |
doi_str_mv | 10.1016/j.ympev.2017.05.020 |
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•It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic context;•Repeated evolution of free venation from anastomosing venation was found in Tectaria.
Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria, ca. 36 species of six non-Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda, Microbrochis, Phlebiogonium, and Sagenia, sampled here for the first time, are resolved as part of Tectaria; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence.</description><identifier>ISSN: 1055-7903</identifier><identifier>EISSN: 1095-9513</identifier><identifier>DOI: 10.1016/j.ympev.2017.05.020</identifier><identifier>PMID: 28552506</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Bayes Theorem ; Convergence ; DNA, Plant - chemistry ; DNA, Plant - isolation & purification ; DNA, Plant - metabolism ; Eupolypods I ; Evolution of leaf venation ; Evolution, Molecular ; Fern phylogeny ; Ferns - anatomy & histology ; Ferns - classification ; Ferns - genetics ; Morphological evolution ; Phylogeny ; Plant Proteins - classification ; Plant Proteins - genetics ; Plastids - classification ; Plastids - genetics ; Ribulose-Bisphosphate Carboxylase - classification ; Ribulose-Bisphosphate Carboxylase - genetics ; Sequence Analysis, DNA</subject><ispartof>Molecular phylogenetics and evolution, 2017-09, Vol.114, p.295-333</ispartof><rights>2017 Elsevier Inc.</rights><rights>Copyright © 2017 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c359t-a4849d6ff3e9781976d74cb3053b0024e00a2e2bbd05310105d29571ad6220213</citedby><cites>FETCH-LOGICAL-c359t-a4849d6ff3e9781976d74cb3053b0024e00a2e2bbd05310105d29571ad6220213</cites><orcidid>0000-0001-8354-6321 ; 0000-0003-2976-0946 ; 0000-0003-3891-9904</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1055790316304043$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28552506$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Liang</creatorcontrib><creatorcontrib>Zhou, Xin-Mao</creatorcontrib><creatorcontrib>Chen, De-Kui</creatorcontrib><creatorcontrib>Schuettpelz, Eric</creatorcontrib><creatorcontrib>Knapp, Ralf</creatorcontrib><creatorcontrib>Lu, Ngan Thi</creatorcontrib><creatorcontrib>Luong, Thien Tam</creatorcontrib><creatorcontrib>Dang, Minh Tri</creatorcontrib><creatorcontrib>Duan, Yi-Fan</creatorcontrib><creatorcontrib>He, Hai</creatorcontrib><creatorcontrib>Gao, Xin-Fen</creatorcontrib><creatorcontrib>Zhang, Li-Bing</creatorcontrib><title>A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation</title><title>Molecular phylogenetics and evolution</title><addtitle>Mol Phylogenet Evol</addtitle><description>[Display omitted]
•It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic context;•Repeated evolution of free venation from anastomosing venation was found in Tectaria.
Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria, ca. 36 species of six non-Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda, Microbrochis, Phlebiogonium, and Sagenia, sampled here for the first time, are resolved as part of Tectaria; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence.</description><subject>Bayes Theorem</subject><subject>Convergence</subject><subject>DNA, Plant - chemistry</subject><subject>DNA, Plant - isolation & purification</subject><subject>DNA, Plant - metabolism</subject><subject>Eupolypods I</subject><subject>Evolution of leaf venation</subject><subject>Evolution, Molecular</subject><subject>Fern phylogeny</subject><subject>Ferns - anatomy & histology</subject><subject>Ferns - classification</subject><subject>Ferns - genetics</subject><subject>Morphological evolution</subject><subject>Phylogeny</subject><subject>Plant Proteins - classification</subject><subject>Plant Proteins - genetics</subject><subject>Plastids - classification</subject><subject>Plastids - genetics</subject><subject>Ribulose-Bisphosphate Carboxylase - classification</subject><subject>Ribulose-Bisphosphate Carboxylase - genetics</subject><subject>Sequence Analysis, DNA</subject><issn>1055-7903</issn><issn>1095-9513</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kcFu1DAQhiMEoqXwBEjIx3JIGNtxskHiUFXQIlWCQzlbTjxJvTh2sJOV8ro8CU633SMnj_75f8_YX5a9p1BQoNWnfbGOEx4KBrQuQBTA4EV2TqEReSMof7nVQuR1A_wsexPjHoBS0YjX2RnbCcEEVOfZ3ysyWN8qS6aH1foB3Up8T-YHJD0GR5KwRHKP3ayCUeTyuepQ4Wfy09t18tooi_EjaVVETbwjk1VxNpoop4lbOosqkFGF3xgiMRrdbHqDMUl7HwgevF1m450KK7HGoRpSb4vGZUjlHEnACdWc7j55tx37gEgO6NSj0Ac_plQa7EcfjRtOrbfZq17ZiO-ezovs17ev99e3-d2Pm-_XV3d5x0Uz56rclY2u-p5jU-9oU1e6LruWg-AtACsRQDFkbauTkgCA0KwRNVW6YgwY5RfZ5fHeKfg_S1pcjiZ2aK1y6JcoaQJR8prXVbLyo7ULPsaAvZyCST-0Sgpygyv38hGu3OBKEDLBTakPTwOWdkR9yjzTTIYvRwOmZx4MBhk7g65DbULiJrU3_x3wD7GmvIc</recordid><startdate>201709</startdate><enddate>201709</enddate><creator>Zhang, Liang</creator><creator>Zhou, Xin-Mao</creator><creator>Chen, De-Kui</creator><creator>Schuettpelz, Eric</creator><creator>Knapp, Ralf</creator><creator>Lu, Ngan Thi</creator><creator>Luong, Thien Tam</creator><creator>Dang, Minh Tri</creator><creator>Duan, Yi-Fan</creator><creator>He, Hai</creator><creator>Gao, Xin-Fen</creator><creator>Zhang, Li-Bing</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-8354-6321</orcidid><orcidid>https://orcid.org/0000-0003-2976-0946</orcidid><orcidid>https://orcid.org/0000-0003-3891-9904</orcidid></search><sort><creationdate>201709</creationdate><title>A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation</title><author>Zhang, Liang ; Zhou, Xin-Mao ; Chen, De-Kui ; Schuettpelz, Eric ; Knapp, Ralf ; Lu, Ngan Thi ; Luong, Thien Tam ; Dang, Minh Tri ; Duan, Yi-Fan ; He, Hai ; Gao, Xin-Fen ; Zhang, Li-Bing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-a4849d6ff3e9781976d74cb3053b0024e00a2e2bbd05310105d29571ad6220213</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Bayes Theorem</topic><topic>Convergence</topic><topic>DNA, Plant - chemistry</topic><topic>DNA, Plant - isolation & purification</topic><topic>DNA, Plant - metabolism</topic><topic>Eupolypods I</topic><topic>Evolution of leaf venation</topic><topic>Evolution, Molecular</topic><topic>Fern phylogeny</topic><topic>Ferns - anatomy & histology</topic><topic>Ferns - classification</topic><topic>Ferns - genetics</topic><topic>Morphological evolution</topic><topic>Phylogeny</topic><topic>Plant Proteins - classification</topic><topic>Plant Proteins - genetics</topic><topic>Plastids - classification</topic><topic>Plastids - genetics</topic><topic>Ribulose-Bisphosphate Carboxylase - classification</topic><topic>Ribulose-Bisphosphate Carboxylase - genetics</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Liang</creatorcontrib><creatorcontrib>Zhou, Xin-Mao</creatorcontrib><creatorcontrib>Chen, De-Kui</creatorcontrib><creatorcontrib>Schuettpelz, Eric</creatorcontrib><creatorcontrib>Knapp, Ralf</creatorcontrib><creatorcontrib>Lu, Ngan Thi</creatorcontrib><creatorcontrib>Luong, Thien Tam</creatorcontrib><creatorcontrib>Dang, Minh Tri</creatorcontrib><creatorcontrib>Duan, Yi-Fan</creatorcontrib><creatorcontrib>He, Hai</creatorcontrib><creatorcontrib>Gao, Xin-Fen</creatorcontrib><creatorcontrib>Zhang, Li-Bing</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Liang</au><au>Zhou, Xin-Mao</au><au>Chen, De-Kui</au><au>Schuettpelz, Eric</au><au>Knapp, Ralf</au><au>Lu, Ngan Thi</au><au>Luong, Thien Tam</au><au>Dang, Minh Tri</au><au>Duan, Yi-Fan</au><au>He, Hai</au><au>Gao, Xin-Fen</au><au>Zhang, Li-Bing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2017-09</date><risdate>2017</risdate><volume>114</volume><spage>295</spage><epage>333</epage><pages>295-333</pages><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>[Display omitted]
•It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic context;•Repeated evolution of free venation from anastomosing venation was found in Tectaria.
Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria, ca. 36 species of six non-Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda, Microbrochis, Phlebiogonium, and Sagenia, sampled here for the first time, are resolved as part of Tectaria; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>28552506</pmid><doi>10.1016/j.ympev.2017.05.020</doi><tpages>39</tpages><orcidid>https://orcid.org/0000-0001-8354-6321</orcidid><orcidid>https://orcid.org/0000-0003-2976-0946</orcidid><orcidid>https://orcid.org/0000-0003-3891-9904</orcidid></addata></record> |
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subjects | Bayes Theorem Convergence DNA, Plant - chemistry DNA, Plant - isolation & purification DNA, Plant - metabolism Eupolypods I Evolution of leaf venation Evolution, Molecular Fern phylogeny Ferns - anatomy & histology Ferns - classification Ferns - genetics Morphological evolution Phylogeny Plant Proteins - classification Plant Proteins - genetics Plastids - classification Plastids - genetics Ribulose-Bisphosphate Carboxylase - classification Ribulose-Bisphosphate Carboxylase - genetics Sequence Analysis, DNA |
title | A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation |
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