A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation

[Display omitted] •It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic conte...

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Veröffentlicht in:Molecular phylogenetics and evolution 2017-09, Vol.114, p.295-333
Hauptverfasser: Zhang, Liang, Zhou, Xin-Mao, Chen, De-Kui, Schuettpelz, Eric, Knapp, Ralf, Lu, Ngan Thi, Luong, Thien Tam, Dang, Minh Tri, Duan, Yi-Fan, He, Hai, Gao, Xin-Fen, Zhang, Li-Bing
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container_title Molecular phylogenetics and evolution
container_volume 114
creator Zhang, Liang
Zhou, Xin-Mao
Chen, De-Kui
Schuettpelz, Eric
Knapp, Ralf
Lu, Ngan Thi
Luong, Thien Tam
Dang, Minh Tri
Duan, Yi-Fan
He, Hai
Gao, Xin-Fen
Zhang, Li-Bing
description [Display omitted] •It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic context;•Repeated evolution of free venation from anastomosing venation was found in Tectaria. Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria, ca. 36 species of six non-Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda, Microbrochis, Phlebiogonium, and Sagenia, sampled here for the first time, are resolved as part of Tectaria; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence.
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Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria, ca. 36 species of six non-Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda, Microbrochis, Phlebiogonium, and Sagenia, sampled here for the first time, are resolved as part of Tectaria; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence.</description><identifier>ISSN: 1055-7903</identifier><identifier>EISSN: 1095-9513</identifier><identifier>DOI: 10.1016/j.ympev.2017.05.020</identifier><identifier>PMID: 28552506</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Bayes Theorem ; Convergence ; DNA, Plant - chemistry ; DNA, Plant - isolation &amp; purification ; DNA, Plant - metabolism ; Eupolypods I ; Evolution of leaf venation ; Evolution, Molecular ; Fern phylogeny ; Ferns - anatomy &amp; histology ; Ferns - classification ; Ferns - genetics ; Morphological evolution ; Phylogeny ; Plant Proteins - classification ; Plant Proteins - genetics ; Plastids - classification ; Plastids - genetics ; Ribulose-Bisphosphate Carboxylase - classification ; Ribulose-Bisphosphate Carboxylase - genetics ; Sequence Analysis, DNA</subject><ispartof>Molecular phylogenetics and evolution, 2017-09, Vol.114, p.295-333</ispartof><rights>2017 Elsevier Inc.</rights><rights>Copyright © 2017 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c359t-a4849d6ff3e9781976d74cb3053b0024e00a2e2bbd05310105d29571ad6220213</citedby><cites>FETCH-LOGICAL-c359t-a4849d6ff3e9781976d74cb3053b0024e00a2e2bbd05310105d29571ad6220213</cites><orcidid>0000-0001-8354-6321 ; 0000-0003-2976-0946 ; 0000-0003-3891-9904</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1055790316304043$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28552506$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Liang</creatorcontrib><creatorcontrib>Zhou, Xin-Mao</creatorcontrib><creatorcontrib>Chen, De-Kui</creatorcontrib><creatorcontrib>Schuettpelz, Eric</creatorcontrib><creatorcontrib>Knapp, Ralf</creatorcontrib><creatorcontrib>Lu, Ngan Thi</creatorcontrib><creatorcontrib>Luong, Thien Tam</creatorcontrib><creatorcontrib>Dang, Minh Tri</creatorcontrib><creatorcontrib>Duan, Yi-Fan</creatorcontrib><creatorcontrib>He, Hai</creatorcontrib><creatorcontrib>Gao, Xin-Fen</creatorcontrib><creatorcontrib>Zhang, Li-Bing</creatorcontrib><title>A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation</title><title>Molecular phylogenetics and evolution</title><addtitle>Mol Phylogenet Evol</addtitle><description>[Display omitted] •It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic context;•Repeated evolution of free venation from anastomosing venation was found in Tectaria. Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria, ca. 36 species of six non-Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda, Microbrochis, Phlebiogonium, and Sagenia, sampled here for the first time, are resolved as part of Tectaria; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence.</description><subject>Bayes Theorem</subject><subject>Convergence</subject><subject>DNA, Plant - chemistry</subject><subject>DNA, Plant - isolation &amp; 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Zhou, Xin-Mao ; Chen, De-Kui ; Schuettpelz, Eric ; Knapp, Ralf ; Lu, Ngan Thi ; Luong, Thien Tam ; Dang, Minh Tri ; Duan, Yi-Fan ; He, Hai ; Gao, Xin-Fen ; Zhang, Li-Bing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-a4849d6ff3e9781976d74cb3053b0024e00a2e2bbd05310105d29571ad6220213</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Bayes Theorem</topic><topic>Convergence</topic><topic>DNA, Plant - chemistry</topic><topic>DNA, Plant - isolation &amp; purification</topic><topic>DNA, Plant - metabolism</topic><topic>Eupolypods I</topic><topic>Evolution of leaf venation</topic><topic>Evolution, Molecular</topic><topic>Fern phylogeny</topic><topic>Ferns - anatomy &amp; histology</topic><topic>Ferns - classification</topic><topic>Ferns - genetics</topic><topic>Morphological evolution</topic><topic>Phylogeny</topic><topic>Plant Proteins - classification</topic><topic>Plant Proteins - genetics</topic><topic>Plastids - classification</topic><topic>Plastids - genetics</topic><topic>Ribulose-Bisphosphate Carboxylase - classification</topic><topic>Ribulose-Bisphosphate Carboxylase - genetics</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Liang</creatorcontrib><creatorcontrib>Zhou, Xin-Mao</creatorcontrib><creatorcontrib>Chen, De-Kui</creatorcontrib><creatorcontrib>Schuettpelz, Eric</creatorcontrib><creatorcontrib>Knapp, Ralf</creatorcontrib><creatorcontrib>Lu, Ngan Thi</creatorcontrib><creatorcontrib>Luong, Thien Tam</creatorcontrib><creatorcontrib>Dang, Minh Tri</creatorcontrib><creatorcontrib>Duan, Yi-Fan</creatorcontrib><creatorcontrib>He, Hai</creatorcontrib><creatorcontrib>Gao, Xin-Fen</creatorcontrib><creatorcontrib>Zhang, Li-Bing</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Liang</au><au>Zhou, Xin-Mao</au><au>Chen, De-Kui</au><au>Schuettpelz, Eric</au><au>Knapp, Ralf</au><au>Lu, Ngan Thi</au><au>Luong, Thien Tam</au><au>Dang, Minh Tri</au><au>Duan, Yi-Fan</au><au>He, Hai</au><au>Gao, Xin-Fen</au><au>Zhang, Li-Bing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2017-09</date><risdate>2017</risdate><volume>114</volume><spage>295</spage><epage>333</epage><pages>295-333</pages><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>[Display omitted] •It deals with one of the 10 largest fern genera;•A large sampling (362 accessions) across the world has been achieved;•It is one of the largest fern phylogenies based on both plastid and nuclear data;•It is one of the largest morphological analyses in ferns in a phylogenetic context;•Repeated evolution of free venation from anastomosing venation was found in Tectaria. Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria, ca. 36 species of six non-Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda, Microbrochis, Phlebiogonium, and Sagenia, sampled here for the first time, are resolved as part of Tectaria; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>28552506</pmid><doi>10.1016/j.ympev.2017.05.020</doi><tpages>39</tpages><orcidid>https://orcid.org/0000-0001-8354-6321</orcidid><orcidid>https://orcid.org/0000-0003-2976-0946</orcidid><orcidid>https://orcid.org/0000-0003-3891-9904</orcidid></addata></record>
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subjects Bayes Theorem
Convergence
DNA, Plant - chemistry
DNA, Plant - isolation & purification
DNA, Plant - metabolism
Eupolypods I
Evolution of leaf venation
Evolution, Molecular
Fern phylogeny
Ferns - anatomy & histology
Ferns - classification
Ferns - genetics
Morphological evolution
Phylogeny
Plant Proteins - classification
Plant Proteins - genetics
Plastids - classification
Plastids - genetics
Ribulose-Bisphosphate Carboxylase - classification
Ribulose-Bisphosphate Carboxylase - genetics
Sequence Analysis, DNA
title A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation
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