Mycobacteria Encode Active and Inactive Classes of TesB Fatty-Acyl CoA Thioesterases Revealed through Structural and Functional Analysis
Mycobacteria contain a large number of highly divergent species and exhibit unusual lipid metabolism profiles, believed to play important roles in immune invasion. Thioesterases modulate lipid metabolism through the hydrolysis of activated fatty-acyl CoAs; multiple copies are present in mycobacteria...
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Veröffentlicht in: | Biochemistry (Easton) 2017-03, Vol.56 (10), p.1460-1472 |
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creator | Swarbrick, Crystall M. D Bythrow, Glennon V Aragao, David Germain, Gabrielle A Quadri, Luis E. N Forwood, Jade K |
description | Mycobacteria contain a large number of highly divergent species and exhibit unusual lipid metabolism profiles, believed to play important roles in immune invasion. Thioesterases modulate lipid metabolism through the hydrolysis of activated fatty-acyl CoAs; multiple copies are present in mycobacteria, yet many remain uncharacterized. Here, we undertake a comprehensive structural and functional analysis of a TesB thioesterase from Mycobacterium avium (MaTesB). Structural superposition with other TesB thioesterases reveals that the Asp active site residue, highly conserved across a wide range of TesB thioesterases, is mutated to Ala. Consistent with these structural data, the wild-type enzyme failed to hydrolyze an extensive range of acyl-CoA substrates. Mutation of this residue to an active Asp residue restored activity against a range of medium-chain length fatty-acyl CoA substrates. Interestingly, this Ala mutation is highly conserved across a wide range of Mycobacterium species but not found in any other bacteria or organism. Our structural homology analysis revealed that at least one other TesB acyl-CoA thioesterase also contains an Ala residue at the active site, while two other Mycobacterium TesB thioesterases harbor an Asp residue at the active site. The inactive TesBs display a common quaternary structure that is distinct from that of the active TesB thioesterases. Investigation of the effect of expression of either the catalytically active or inactive MaTesB in Mycobacterium smegmatis exposed, to the best of our knowledge, the first genotype–phenotype association implicating a mycobacterial tesB gene. This is the first report that mycobacteria encode active and inactive forms of thioesterases, the latter of which appear to be unique to mycobacteria. |
doi_str_mv | 10.1021/acs.biochem.6b01049 |
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D ; Bythrow, Glennon V ; Aragao, David ; Germain, Gabrielle A ; Quadri, Luis E. N ; Forwood, Jade K</creator><creatorcontrib>Swarbrick, Crystall M. D ; Bythrow, Glennon V ; Aragao, David ; Germain, Gabrielle A ; Quadri, Luis E. N ; Forwood, Jade K</creatorcontrib><description>Mycobacteria contain a large number of highly divergent species and exhibit unusual lipid metabolism profiles, believed to play important roles in immune invasion. Thioesterases modulate lipid metabolism through the hydrolysis of activated fatty-acyl CoAs; multiple copies are present in mycobacteria, yet many remain uncharacterized. Here, we undertake a comprehensive structural and functional analysis of a TesB thioesterase from Mycobacterium avium (MaTesB). Structural superposition with other TesB thioesterases reveals that the Asp active site residue, highly conserved across a wide range of TesB thioesterases, is mutated to Ala. Consistent with these structural data, the wild-type enzyme failed to hydrolyze an extensive range of acyl-CoA substrates. Mutation of this residue to an active Asp residue restored activity against a range of medium-chain length fatty-acyl CoA substrates. Interestingly, this Ala mutation is highly conserved across a wide range of Mycobacterium species but not found in any other bacteria or organism. Our structural homology analysis revealed that at least one other TesB acyl-CoA thioesterase also contains an Ala residue at the active site, while two other Mycobacterium TesB thioesterases harbor an Asp residue at the active site. The inactive TesBs display a common quaternary structure that is distinct from that of the active TesB thioesterases. Investigation of the effect of expression of either the catalytically active or inactive MaTesB in Mycobacterium smegmatis exposed, to the best of our knowledge, the first genotype–phenotype association implicating a mycobacterial tesB gene. This is the first report that mycobacteria encode active and inactive forms of thioesterases, the latter of which appear to be unique to mycobacteria.</description><identifier>ISSN: 0006-2960</identifier><identifier>EISSN: 1520-4995</identifier><identifier>DOI: 10.1021/acs.biochem.6b01049</identifier><identifier>PMID: 28156101</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Acyl Coenzyme A - chemistry ; Acyl Coenzyme A - metabolism ; Alanine - chemistry ; Alanine - metabolism ; Amino Acid Sequence ; Amino Acid Substitution ; Aspartic Acid - chemistry ; Aspartic Acid - metabolism ; Bacterial Proteins - chemistry ; Bacterial Proteins - classification ; Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Catalytic Domain ; Escherichia coli - enzymology ; Escherichia coli - genetics ; Gene Expression ; Genetic Association Studies ; Hydrolysis ; Isoenzymes - chemistry ; Isoenzymes - classification ; Isoenzymes - genetics ; Isoenzymes - metabolism ; Kinetics ; Mutation ; Mycobacterium avium ; Mycobacterium avium - enzymology ; Mycobacterium avium - genetics ; Mycobacterium smegmatis ; Mycobacterium smegmatis - enzymology ; Mycobacterium smegmatis - genetics ; Palmitoyl-CoA Hydrolase - chemistry ; Palmitoyl-CoA Hydrolase - classification ; Palmitoyl-CoA Hydrolase - genetics ; Palmitoyl-CoA Hydrolase - metabolism ; Protein Domains ; Protein Structure, Quaternary ; Protein Structure, Secondary ; Recombinant Proteins - chemistry ; Recombinant Proteins - classification ; Recombinant Proteins - genetics ; Recombinant Proteins - metabolism ; Sequence Alignment ; Sequence Homology, Amino Acid ; Structure-Activity Relationship</subject><ispartof>Biochemistry (Easton), 2017-03, Vol.56 (10), p.1460-1472</ispartof><rights>Copyright © 2017 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a378t-d9e0b01f331db10dc893aa509d15688e2a4e9ee44ef92a8cdd811f231258e3463</citedby><cites>FETCH-LOGICAL-a378t-d9e0b01f331db10dc893aa509d15688e2a4e9ee44ef92a8cdd811f231258e3463</cites><orcidid>0000-0003-3267-9997</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.biochem.6b01049$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.biochem.6b01049$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28156101$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Swarbrick, Crystall M. D</creatorcontrib><creatorcontrib>Bythrow, Glennon V</creatorcontrib><creatorcontrib>Aragao, David</creatorcontrib><creatorcontrib>Germain, Gabrielle A</creatorcontrib><creatorcontrib>Quadri, Luis E. N</creatorcontrib><creatorcontrib>Forwood, Jade K</creatorcontrib><title>Mycobacteria Encode Active and Inactive Classes of TesB Fatty-Acyl CoA Thioesterases Revealed through Structural and Functional Analysis</title><title>Biochemistry (Easton)</title><addtitle>Biochemistry</addtitle><description>Mycobacteria contain a large number of highly divergent species and exhibit unusual lipid metabolism profiles, believed to play important roles in immune invasion. Thioesterases modulate lipid metabolism through the hydrolysis of activated fatty-acyl CoAs; multiple copies are present in mycobacteria, yet many remain uncharacterized. Here, we undertake a comprehensive structural and functional analysis of a TesB thioesterase from Mycobacterium avium (MaTesB). Structural superposition with other TesB thioesterases reveals that the Asp active site residue, highly conserved across a wide range of TesB thioesterases, is mutated to Ala. Consistent with these structural data, the wild-type enzyme failed to hydrolyze an extensive range of acyl-CoA substrates. Mutation of this residue to an active Asp residue restored activity against a range of medium-chain length fatty-acyl CoA substrates. Interestingly, this Ala mutation is highly conserved across a wide range of Mycobacterium species but not found in any other bacteria or organism. Our structural homology analysis revealed that at least one other TesB acyl-CoA thioesterase also contains an Ala residue at the active site, while two other Mycobacterium TesB thioesterases harbor an Asp residue at the active site. The inactive TesBs display a common quaternary structure that is distinct from that of the active TesB thioesterases. Investigation of the effect of expression of either the catalytically active or inactive MaTesB in Mycobacterium smegmatis exposed, to the best of our knowledge, the first genotype–phenotype association implicating a mycobacterial tesB gene. This is the first report that mycobacteria encode active and inactive forms of thioesterases, the latter of which appear to be unique to mycobacteria.</description><subject>Acyl Coenzyme A - chemistry</subject><subject>Acyl Coenzyme A - metabolism</subject><subject>Alanine - chemistry</subject><subject>Alanine - metabolism</subject><subject>Amino Acid Sequence</subject><subject>Amino Acid Substitution</subject><subject>Aspartic Acid - chemistry</subject><subject>Aspartic Acid - metabolism</subject><subject>Bacterial Proteins - chemistry</subject><subject>Bacterial Proteins - classification</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Catalytic Domain</subject><subject>Escherichia coli - enzymology</subject><subject>Escherichia coli - genetics</subject><subject>Gene Expression</subject><subject>Genetic Association Studies</subject><subject>Hydrolysis</subject><subject>Isoenzymes - chemistry</subject><subject>Isoenzymes - classification</subject><subject>Isoenzymes - genetics</subject><subject>Isoenzymes - metabolism</subject><subject>Kinetics</subject><subject>Mutation</subject><subject>Mycobacterium avium</subject><subject>Mycobacterium avium - enzymology</subject><subject>Mycobacterium avium - genetics</subject><subject>Mycobacterium smegmatis</subject><subject>Mycobacterium smegmatis - enzymology</subject><subject>Mycobacterium smegmatis - genetics</subject><subject>Palmitoyl-CoA Hydrolase - chemistry</subject><subject>Palmitoyl-CoA Hydrolase - classification</subject><subject>Palmitoyl-CoA Hydrolase - genetics</subject><subject>Palmitoyl-CoA Hydrolase - metabolism</subject><subject>Protein Domains</subject><subject>Protein Structure, Quaternary</subject><subject>Protein Structure, Secondary</subject><subject>Recombinant Proteins - chemistry</subject><subject>Recombinant Proteins - classification</subject><subject>Recombinant Proteins - genetics</subject><subject>Recombinant Proteins - metabolism</subject><subject>Sequence Alignment</subject><subject>Sequence Homology, Amino Acid</subject><subject>Structure-Activity Relationship</subject><issn>0006-2960</issn><issn>1520-4995</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkVFP2zAUha1p0yhsvwBp8uNeUuzYTu3HUFFAAiGN8hzd2Dc0KI2ZnSDlH_CzcWm3R8SLrSN95_heH0JOOZtzlvMzsHFet95ucDsvasaZNF_IjKucZdIY9ZXMGGNFlpuCHZHjGJ-SlGwhv5OjXHNVcMZn5PV2sr4GO2BogV701jukpR3aF6TQO3rdw14sO4gRI_UNXWM8pysYhikr7dTRpS_petN6jCkFdtAffEHo0NFhE_z4uKH3QxjtMAbo3lNXY59SfZ9kmY4ptvEH-dZAF_Hn4T4hD6uL9fIqu7m7vF6WNxmIhR4yZ5ClXRshuKs5c1YbAaCYcWkjrTEHiQZRSmxMDto6pzlvcsFzpVHIQpyQ3_vc5-D_jmnkattGi10HPfoxVlybhdCSG_kJtFBKKsV4QsUetcHHGLCpnkO7hTBVnFW7tqrUVnVoqzq0lVy_Dg-M9Rbdf8-_ehJwtgd27ic_hvRZ8cPIN_smpFU</recordid><startdate>20170314</startdate><enddate>20170314</enddate><creator>Swarbrick, Crystall M. 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N ; Forwood, Jade K</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a378t-d9e0b01f331db10dc893aa509d15688e2a4e9ee44ef92a8cdd811f231258e3463</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Acyl Coenzyme A - chemistry</topic><topic>Acyl Coenzyme A - metabolism</topic><topic>Alanine - chemistry</topic><topic>Alanine - metabolism</topic><topic>Amino Acid Sequence</topic><topic>Amino Acid Substitution</topic><topic>Aspartic Acid - chemistry</topic><topic>Aspartic Acid - metabolism</topic><topic>Bacterial Proteins - chemistry</topic><topic>Bacterial Proteins - classification</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - metabolism</topic><topic>Catalytic Domain</topic><topic>Escherichia coli - enzymology</topic><topic>Escherichia coli - genetics</topic><topic>Gene Expression</topic><topic>Genetic Association Studies</topic><topic>Hydrolysis</topic><topic>Isoenzymes - chemistry</topic><topic>Isoenzymes - classification</topic><topic>Isoenzymes - genetics</topic><topic>Isoenzymes - metabolism</topic><topic>Kinetics</topic><topic>Mutation</topic><topic>Mycobacterium avium</topic><topic>Mycobacterium avium - enzymology</topic><topic>Mycobacterium avium - genetics</topic><topic>Mycobacterium smegmatis</topic><topic>Mycobacterium smegmatis - enzymology</topic><topic>Mycobacterium smegmatis - genetics</topic><topic>Palmitoyl-CoA Hydrolase - chemistry</topic><topic>Palmitoyl-CoA Hydrolase - classification</topic><topic>Palmitoyl-CoA Hydrolase - genetics</topic><topic>Palmitoyl-CoA Hydrolase - metabolism</topic><topic>Protein Domains</topic><topic>Protein Structure, Quaternary</topic><topic>Protein Structure, Secondary</topic><topic>Recombinant Proteins - chemistry</topic><topic>Recombinant Proteins - classification</topic><topic>Recombinant Proteins - genetics</topic><topic>Recombinant Proteins - metabolism</topic><topic>Sequence Alignment</topic><topic>Sequence Homology, Amino Acid</topic><topic>Structure-Activity Relationship</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Swarbrick, Crystall M. D</creatorcontrib><creatorcontrib>Bythrow, Glennon V</creatorcontrib><creatorcontrib>Aragao, David</creatorcontrib><creatorcontrib>Germain, Gabrielle A</creatorcontrib><creatorcontrib>Quadri, Luis E. N</creatorcontrib><creatorcontrib>Forwood, Jade K</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Swarbrick, Crystall M. D</au><au>Bythrow, Glennon V</au><au>Aragao, David</au><au>Germain, Gabrielle A</au><au>Quadri, Luis E. N</au><au>Forwood, Jade K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mycobacteria Encode Active and Inactive Classes of TesB Fatty-Acyl CoA Thioesterases Revealed through Structural and Functional Analysis</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>2017-03-14</date><risdate>2017</risdate><volume>56</volume><issue>10</issue><spage>1460</spage><epage>1472</epage><pages>1460-1472</pages><issn>0006-2960</issn><eissn>1520-4995</eissn><abstract>Mycobacteria contain a large number of highly divergent species and exhibit unusual lipid metabolism profiles, believed to play important roles in immune invasion. Thioesterases modulate lipid metabolism through the hydrolysis of activated fatty-acyl CoAs; multiple copies are present in mycobacteria, yet many remain uncharacterized. Here, we undertake a comprehensive structural and functional analysis of a TesB thioesterase from Mycobacterium avium (MaTesB). Structural superposition with other TesB thioesterases reveals that the Asp active site residue, highly conserved across a wide range of TesB thioesterases, is mutated to Ala. Consistent with these structural data, the wild-type enzyme failed to hydrolyze an extensive range of acyl-CoA substrates. Mutation of this residue to an active Asp residue restored activity against a range of medium-chain length fatty-acyl CoA substrates. Interestingly, this Ala mutation is highly conserved across a wide range of Mycobacterium species but not found in any other bacteria or organism. Our structural homology analysis revealed that at least one other TesB acyl-CoA thioesterase also contains an Ala residue at the active site, while two other Mycobacterium TesB thioesterases harbor an Asp residue at the active site. The inactive TesBs display a common quaternary structure that is distinct from that of the active TesB thioesterases. Investigation of the effect of expression of either the catalytically active or inactive MaTesB in Mycobacterium smegmatis exposed, to the best of our knowledge, the first genotype–phenotype association implicating a mycobacterial tesB gene. This is the first report that mycobacteria encode active and inactive forms of thioesterases, the latter of which appear to be unique to mycobacteria.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>28156101</pmid><doi>10.1021/acs.biochem.6b01049</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0003-3267-9997</orcidid></addata></record> |
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subjects | Acyl Coenzyme A - chemistry Acyl Coenzyme A - metabolism Alanine - chemistry Alanine - metabolism Amino Acid Sequence Amino Acid Substitution Aspartic Acid - chemistry Aspartic Acid - metabolism Bacterial Proteins - chemistry Bacterial Proteins - classification Bacterial Proteins - genetics Bacterial Proteins - metabolism Catalytic Domain Escherichia coli - enzymology Escherichia coli - genetics Gene Expression Genetic Association Studies Hydrolysis Isoenzymes - chemistry Isoenzymes - classification Isoenzymes - genetics Isoenzymes - metabolism Kinetics Mutation Mycobacterium avium Mycobacterium avium - enzymology Mycobacterium avium - genetics Mycobacterium smegmatis Mycobacterium smegmatis - enzymology Mycobacterium smegmatis - genetics Palmitoyl-CoA Hydrolase - chemistry Palmitoyl-CoA Hydrolase - classification Palmitoyl-CoA Hydrolase - genetics Palmitoyl-CoA Hydrolase - metabolism Protein Domains Protein Structure, Quaternary Protein Structure, Secondary Recombinant Proteins - chemistry Recombinant Proteins - classification Recombinant Proteins - genetics Recombinant Proteins - metabolism Sequence Alignment Sequence Homology, Amino Acid Structure-Activity Relationship |
title | Mycobacteria Encode Active and Inactive Classes of TesB Fatty-Acyl CoA Thioesterases Revealed through Structural and Functional Analysis |
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