The Essential Components of a Successful Galaxy Service
Driven by advances in data generation technologies and fuelled by radical reduction in costs, genomics has become a data science. Nonetheless the field of genomics has been restrained by the ability to analyse data. Science gateways, such as Galaxy, have the potential to enable bench biologists to a...
Gespeichert in:
| Veröffentlicht in: | Journal of grid computing 2016-12, Vol.14 (4), p.533-543 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 543 |
|---|---|
| container_issue | 4 |
| container_start_page | 533 |
| container_title | Journal of grid computing |
| container_volume | 14 |
| creator | McGrath, Annette McMahon, Steve Li, Sean Ludbey, Joel Ho, Tim |
| description | Driven by advances in data generation technologies and fuelled by radical reduction in costs, genomics has become a data science. Nonetheless the field of genomics has been restrained by the ability to analyse data. Science gateways, such as Galaxy, have the potential to enable bench biologists to analyse their own data without needing be familiar with the command line. Implementing a production scale Galaxy service, sufficiently well-featured and resourced to meet the needs of the end-users, is a significant undertaking and requires the consideration and combination of a number of factors to be successfully adopted by the community. In this paper, we describe the process that we undertook to implement a Galaxy service and describe what we consider to be the essential components of such a service. Our experience and insights will be of interest to those who are planning on implementing a science gateway service in a research organisation. |
| doi_str_mv | 10.1007/s10723-016-9379-6 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1893916438</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1893916438</sourcerecordid><originalsourceid>FETCH-LOGICAL-c392t-79038bbfdfa58b6c7059d9843be656ad7890ed97a4149572f9579f832add465e3</originalsourceid><addsrcrecordid>eNp1kEtLAzEUhYMoWKs_wN2AGzfRPCavpZRahYKL1nXIzCQ6ZTqpuR3Rf2_qCILg5j7gO4fDQeiSkhtKiLoFShTjmFCJDVcGyyM0oUIxbKguj79vgpVW_BSdAWwIYUITNkFq_eqLOYDv963rilnc7mKfHyhiKFyxGuraA4ShKxaucx-fxcqn97b25-gkuA78xc-eouf7-Xr2gJdPi8fZ3RLX3LA9VoZwXVWhCU7oStaKCNMYXfLKSyFdo7QhvjHKlbQ0OW7IwwTNmWuaUgrPp-h69N2l-DZ42NttC7XvOtf7OICl2nBDZcl1Rq_-oJs4pD6ns4wJowTTXGSKjlSdIkDywe5Su3Xp01JiD1XasUqbq7SHKq3MGjZqILP9i0-_zv-LvgDIanRo</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2259752835</pqid></control><display><type>article</type><title>The Essential Components of a Successful Galaxy Service</title><source>SpringerLink Journals - AutoHoldings</source><creator>McGrath, Annette ; McMahon, Steve ; Li, Sean ; Ludbey, Joel ; Ho, Tim</creator><creatorcontrib>McGrath, Annette ; McMahon, Steve ; Li, Sean ; Ludbey, Joel ; Ho, Tim</creatorcontrib><description>Driven by advances in data generation technologies and fuelled by radical reduction in costs, genomics has become a data science. Nonetheless the field of genomics has been restrained by the ability to analyse data. Science gateways, such as Galaxy, have the potential to enable bench biologists to analyse their own data without needing be familiar with the command line. Implementing a production scale Galaxy service, sufficiently well-featured and resourced to meet the needs of the end-users, is a significant undertaking and requires the consideration and combination of a number of factors to be successfully adopted by the community. In this paper, we describe the process that we undertook to implement a Galaxy service and describe what we consider to be the essential components of such a service. Our experience and insights will be of interest to those who are planning on implementing a science gateway service in a research organisation.</description><identifier>ISSN: 1570-7873</identifier><identifier>EISSN: 1572-9184</identifier><identifier>DOI: 10.1007/s10723-016-9379-6</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Benches ; Biologists ; Communities ; Computational grids ; Computer Science ; Costs ; Data analysis ; End users ; Galaxies ; Genomics ; Management of Computing and Information Systems ; Processor Architectures ; Radicals ; User Interfaces and Human Computer Interaction</subject><ispartof>Journal of grid computing, 2016-12, Vol.14 (4), p.533-543</ispartof><rights>Springer Science+Business Media Dordrecht 2016</rights><rights>Journal of Grid Computing is a copyright of Springer, (2016). All Rights Reserved.</rights><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c392t-79038bbfdfa58b6c7059d9843be656ad7890ed97a4149572f9579f832add465e3</citedby><cites>FETCH-LOGICAL-c392t-79038bbfdfa58b6c7059d9843be656ad7890ed97a4149572f9579f832add465e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10723-016-9379-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10723-016-9379-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>McGrath, Annette</creatorcontrib><creatorcontrib>McMahon, Steve</creatorcontrib><creatorcontrib>Li, Sean</creatorcontrib><creatorcontrib>Ludbey, Joel</creatorcontrib><creatorcontrib>Ho, Tim</creatorcontrib><title>The Essential Components of a Successful Galaxy Service</title><title>Journal of grid computing</title><addtitle>J Grid Computing</addtitle><description>Driven by advances in data generation technologies and fuelled by radical reduction in costs, genomics has become a data science. Nonetheless the field of genomics has been restrained by the ability to analyse data. Science gateways, such as Galaxy, have the potential to enable bench biologists to analyse their own data without needing be familiar with the command line. Implementing a production scale Galaxy service, sufficiently well-featured and resourced to meet the needs of the end-users, is a significant undertaking and requires the consideration and combination of a number of factors to be successfully adopted by the community. In this paper, we describe the process that we undertook to implement a Galaxy service and describe what we consider to be the essential components of such a service. Our experience and insights will be of interest to those who are planning on implementing a science gateway service in a research organisation.</description><subject>Benches</subject><subject>Biologists</subject><subject>Communities</subject><subject>Computational grids</subject><subject>Computer Science</subject><subject>Costs</subject><subject>Data analysis</subject><subject>End users</subject><subject>Galaxies</subject><subject>Genomics</subject><subject>Management of Computing and Information Systems</subject><subject>Processor Architectures</subject><subject>Radicals</subject><subject>User Interfaces and Human Computer Interaction</subject><issn>1570-7873</issn><issn>1572-9184</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><recordid>eNp1kEtLAzEUhYMoWKs_wN2AGzfRPCavpZRahYKL1nXIzCQ6ZTqpuR3Rf2_qCILg5j7gO4fDQeiSkhtKiLoFShTjmFCJDVcGyyM0oUIxbKguj79vgpVW_BSdAWwIYUITNkFq_eqLOYDv963rilnc7mKfHyhiKFyxGuraA4ShKxaucx-fxcqn97b25-gkuA78xc-eouf7-Xr2gJdPi8fZ3RLX3LA9VoZwXVWhCU7oStaKCNMYXfLKSyFdo7QhvjHKlbQ0OW7IwwTNmWuaUgrPp-h69N2l-DZ42NttC7XvOtf7OICl2nBDZcl1Rq_-oJs4pD6ns4wJowTTXGSKjlSdIkDywe5Su3Xp01JiD1XasUqbq7SHKq3MGjZqILP9i0-_zv-LvgDIanRo</recordid><startdate>20161201</startdate><enddate>20161201</enddate><creator>McGrath, Annette</creator><creator>McMahon, Steve</creator><creator>Li, Sean</creator><creator>Ludbey, Joel</creator><creator>Ho, Tim</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>HCIFZ</scope><scope>P5Z</scope><scope>P62</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7SC</scope><scope>8FD</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope></search><sort><creationdate>20161201</creationdate><title>The Essential Components of a Successful Galaxy Service</title><author>McGrath, Annette ; McMahon, Steve ; Li, Sean ; Ludbey, Joel ; Ho, Tim</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c392t-79038bbfdfa58b6c7059d9843be656ad7890ed97a4149572f9579f832add465e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Benches</topic><topic>Biologists</topic><topic>Communities</topic><topic>Computational grids</topic><topic>Computer Science</topic><topic>Costs</topic><topic>Data analysis</topic><topic>End users</topic><topic>Galaxies</topic><topic>Genomics</topic><topic>Management of Computing and Information Systems</topic><topic>Processor Architectures</topic><topic>Radicals</topic><topic>User Interfaces and Human Computer Interaction</topic><toplevel>online_resources</toplevel><creatorcontrib>McGrath, Annette</creatorcontrib><creatorcontrib>McMahon, Steve</creatorcontrib><creatorcontrib>Li, Sean</creatorcontrib><creatorcontrib>Ludbey, Joel</creatorcontrib><creatorcontrib>Ho, Tim</creatorcontrib><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>SciTech Premium Collection</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Computer and Information Systems Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><jtitle>Journal of grid computing</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>McGrath, Annette</au><au>McMahon, Steve</au><au>Li, Sean</au><au>Ludbey, Joel</au><au>Ho, Tim</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Essential Components of a Successful Galaxy Service</atitle><jtitle>Journal of grid computing</jtitle><stitle>J Grid Computing</stitle><date>2016-12-01</date><risdate>2016</risdate><volume>14</volume><issue>4</issue><spage>533</spage><epage>543</epage><pages>533-543</pages><issn>1570-7873</issn><eissn>1572-9184</eissn><abstract>Driven by advances in data generation technologies and fuelled by radical reduction in costs, genomics has become a data science. Nonetheless the field of genomics has been restrained by the ability to analyse data. Science gateways, such as Galaxy, have the potential to enable bench biologists to analyse their own data without needing be familiar with the command line. Implementing a production scale Galaxy service, sufficiently well-featured and resourced to meet the needs of the end-users, is a significant undertaking and requires the consideration and combination of a number of factors to be successfully adopted by the community. In this paper, we describe the process that we undertook to implement a Galaxy service and describe what we consider to be the essential components of such a service. Our experience and insights will be of interest to those who are planning on implementing a science gateway service in a research organisation.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10723-016-9379-6</doi><tpages>11</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1570-7873 |
| ispartof | Journal of grid computing, 2016-12, Vol.14 (4), p.533-543 |
| issn | 1570-7873 1572-9184 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1893916438 |
| source | SpringerLink Journals - AutoHoldings |
| subjects | Benches Biologists Communities Computational grids Computer Science Costs Data analysis End users Galaxies Genomics Management of Computing and Information Systems Processor Architectures Radicals User Interfaces and Human Computer Interaction |
| title | The Essential Components of a Successful Galaxy Service |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T10%3A59%3A00IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20Essential%20Components%20of%20a%20Successful%20Galaxy%20Service&rft.jtitle=Journal%20of%20grid%20computing&rft.au=McGrath,%20Annette&rft.date=2016-12-01&rft.volume=14&rft.issue=4&rft.spage=533&rft.epage=543&rft.pages=533-543&rft.issn=1570-7873&rft.eissn=1572-9184&rft_id=info:doi/10.1007/s10723-016-9379-6&rft_dat=%3Cproquest_cross%3E1893916438%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2259752835&rft_id=info:pmid/&rfr_iscdi=true |